>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)|
           (P-Frk)
          Length = 375

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 174 AAAGTGVPGRAGTMQSLQDKASEWSGVAAADAFAIDE--VNVFEALGGTP 317
           AAAG G PG A  ++ L   A+ +   +   + A+    VN +  LGG P
Sbjct: 228 AAAGPGSPGAAAVVKGLAGPAASYGPYSRVQSMALPPGVVNSYNGLGGPP 277

>ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 473

 Score = 27.3 bits (59), Expect(2) = 0.72
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -1

Query: 208 PALPGTPVPAAAPPLSD-RLGR 146
           P  PG+P PAAA PL++ R+GR
Sbjct: 284 PPAPGSPRPAAAAPLANGRVGR 305



 Score = 22.3 bits (46), Expect(2) = 0.72
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 149 TLCWLPF 129
           TLCWLPF
Sbjct: 331 TLCWLPF 337

>FOXL2_HUMAN (P58012) Forkhead box protein L2|
          Length = 376

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 174 AAAGTGVPGRAGTMQSLQDKASEWSGVAAADAFAIDE--VNVFEALGGTP 317
           AAAG G PG A  ++ L   A+ +       + A+    VN +  LGG P
Sbjct: 232 AAAGPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPP 281

>GP153_HUMAN (Q6NV75) Probable G-protein coupled receptor 153 (G-protein coupled|
           receptor PGR1)
          Length = 609

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
 Frame = +3

Query: 96  PSFQPTEQ*STERQPTKRPSR-----SLRGGAAAGTGVP------GRAGTMQSLQDKASE 242
           P   PT   S +R P  RPS      SLR G +A  G P      G  G+  S     SE
Sbjct: 534 PGEAPTPPSSAQRSPGPRPSAHSHAGSLRPGLSASWGEPGGLRAAGGGGSTSSFLSSPSE 593

Query: 243 WSGVA 257
            SG A
Sbjct: 594 SSGYA 598

>FUMH_BRARE (Q7SX99) Fumarate hydratase, mitochondrial precursor (EC 4.2.1.2)|
           (Fumarase)
          Length = 509

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 168 GGAAAGTGVPGRAGTMQSLQDKASEWSGVAAADAFAIDEVNVFEAL 305
           GG A GTG+  R G  + + DK S  +G+    A      N FEAL
Sbjct: 274 GGTAVGTGLNTRIGFAEKVADKVSALTGLPFVTA-----ANKFEAL 314

>Y2197_MYCTU (Q10389) Hypothetical protein Rv2197c/MT2253|
          Length = 214

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = +3

Query: 129 ERQPTKRPS-RSLRGGAAAGTGVPGRAGTMQSLQ-------DKASEWSGVAAADAFAIDE 284
           E +P  RP+  S+RGG + G+G P +    +S         + A+EWS  A    +    
Sbjct: 92  EAEPATRPTGASVRGGRSIGSGHPAKRAVAESAPVQHADAFEVAAEWSSEAVDRIWLRGT 151

Query: 285 VNVFEALG 308
           V +  A+G
Sbjct: 152 VVLTSAIG 159

>CARB_LACPL (P77886) Carbamoyl-phosphate synthase pyrimidine-specific large|
           chain (EC 6.3.5.5) (Carbamoyl-phosphate synthetase
           ammonia chain)
          Length = 1058

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 27  LAARLAGGYKMVEXXXXXXXXXXPSFQPTEQ*STERQPTKRPSRSLRGGA--AAGTGVPG 200
           LA +LA  YKMV+          P +  T +   E   TKRPS  + G      G GV  
Sbjct: 511 LAHKLAPVYKMVDTCAGEFASETPYYYGTYEFENESIVTKRPSVLVLGSGPIRIGQGVEF 570

Query: 201 RAGTMQSLQDKASEWSGVAA 260
              T+ S+  KA + +G  A
Sbjct: 571 DYATVHSV--KAIQKAGYEA 588

>ACINU_MOUSE (Q9JIX8) Apoptotic chromatin condensation inducer in the nucleus|
           (Acinus)
          Length = 1338

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 10  SPDRACSPPDWPAGIKWWSASPEPHAAAHRLSNQPSSSQLNGSQQSVPA 156
           S D + S    P+     S SP P + A R  + P S Q +G+Q  V A
Sbjct: 573 SADSSSSRSSSPSSSSSPSRSPSPDSVASRPQSSPGSKQRDGAQARVHA 621

>ELN_BOVIN (P04985) Elastin precursor (Tropoelastin)|
          Length = 747

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 162 LRGGAAAGTGVPGRAGTMQSLQDKASEWSGVAAADAFAIDEVNVFEALGGTP 317
           L G    G G+PG  G +  +   A   +  AAA A A  +   F A GG P
Sbjct: 284 LPGVGVGGPGIPGAPGAIPGIGGIAGVGAPDAAAAAAAAAKAAKFGAAGGLP 335

>PHT3_PSEPU (Q05183) Phthalate 4,5-dioxygenase oxygenase subunit (EC 1.14.12.7)|
          Length = 439

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 168 GGAAAGTG---VPGRAGTMQSLQDKASEWSGVAAADAFAIDEVNV 293
           G +A GTG   +P R  + Q++  K  +W    A   +A+D+ N+
Sbjct: 385 GESAIGTGEKAIPSRICSFQAIVSKDIDWRDYQARYVWALDDANI 429

>HAK14_ORYSA (Q69RI8) Probable potassium transporter 14 (OsHAK14)|
          Length = 859

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 153 SRSLRGGAAAGTGVPGRAGTMQSLQDKASEWSGVAAADAFAIDEVNVFEALGGTP 317
           +RS   G+A+G G  GR   M+  + +++E   V +  A+  DE+   +  GGTP
Sbjct: 3   TRSGGSGSASGGGGGGR---MRLRKTESAEMRWVVSGGAYEEDEIESSDGGGGTP 54

>RSMB_YEAST (P40018) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB)
          Length = 196

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
 Frame = +1

Query: 67  ASPEPHAAAHRLSN-----QPSSSQLNGSQQSVPAGR---*EAAPPRGRAF 195
           A P    A H  SN     QPSSS+ NG   ++ A R      APP+ R F
Sbjct: 137 AKPNTANAKHTSSNSREIAQPSSSRYNGGNDNIGANRSRFNNEAPPQTRKF 187

>SBCC_RHOCA (O68032) Nuclease sbcCD subunit C|
          Length = 1238

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = -1

Query: 214 IVPALPGTPVPAAAPPLSDRLGRFVGCRSVDYCSVGWKDGARRRAAQAMRSTILYPPANR 35
           + PALPGTP P A     DRL           C++   + A +    A+R+ +     +R
Sbjct: 702 LAPALPGTPDPTALAAAQDRL-----------CALQTAEAAAQAEISALRTRLTEAERDR 750

Query: 34  AASTRG----RGT 8
               R     RGT
Sbjct: 751 ERLRRALLAHRGT 763

>RNF39_RAT (Q920M2) RING finger protein 39 (LTP-induced RING finger protein)|
          Length = 352

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 244 HSDALSCSDC--IVPALPGTPVPAAAPPLSDRLGRFVGCR 131
           H D L  SD   +  A PGTPVP  +P   DRL   +G +
Sbjct: 170 HRDLLISSDYRGVSLAPPGTPVPLDSPERFDRLRAVLGAQ 209

>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = +3

Query: 138 PTKRPSRSLR----GGAAAGTGVPGRAGTMQSL--QDKASEWSGVAAADA 269
           P   P R L      G  AG G+PG  G   +L  Q++  EW G+    A
Sbjct: 58  PPPSPPRGLEPPVASGPTAGAGMPGGGGHAAALREQERVYEWFGLVLGSA 107

>GATA4_MOUSE (Q08369) Transcription factor GATA-4 (GATA-binding factor 4)|
          Length = 440

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
 Frame = +3

Query: 168 GGAAAGTGV--------PGRAGTMQS-----LQDKASEWSGVAAADAFAIDEVNVFEALG 308
           GG AAG G+        PG AG+  S     + D  + W+  AAA A   D   V  +L 
Sbjct: 135 GGGAAGAGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDS-PVLHSLP 193

Query: 309 GTPQP 323
           G   P
Sbjct: 194 GRANP 198

>GATA4_HUMAN (P43694) Transcription factor GATA-4 (GATA-binding factor 4)|
          Length = 442

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
 Frame = +3

Query: 168 GGAAAGTGVPGR--------AGTMQS-----LQDKASEWSGVAAADAFAIDEVNVFEALG 308
           GG AAG G+ GR        AG+  S     + D  + W+  AAA A   D   V  +L 
Sbjct: 135 GGGAAGAGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDS-PVLHSLP 193

Query: 309 GTPQP 323
           G   P
Sbjct: 194 GRANP 198

>FUMC_AGRT5 (Q8UEY7) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 463

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 153 SRSLRGGAAAGTGVPGRAGTMQSLQDKASEWSGVAAADAFAIDEVNVFEAL 305
           S+  +GG A GTG+    G  + + ++ SE +G++   A      N FEAL
Sbjct: 223 SKLAQGGTAVGTGLNAPVGFAEKVAEEISEITGLSFVTA-----PNKFEAL 268

>UBP21_MOUSE (Q9QZL6) Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 21) (Ubiquitin-specific
           processing protease 21) (Deubiquitinating enzyme 21)
          Length = 566

 Score = 26.2 bits (56), Expect(2) = 4.1
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -1

Query: 202 LPGTPVPAAAPPLSDR--LGRFVGCRSVDYCSVGWKDGARRRAAQ 74
           LPG+P PA A PL  R  L R     S D   +G   G  R A +
Sbjct: 90  LPGSPPPAVALPLPSRTNLARSKSVSSGDLRPMGIALGGHRGAGE 134



 Score = 20.8 bits (42), Expect(2) = 4.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 305 ERLEDVDLVDGECVGRRHAAPLR 237
           ERL+ ++L  G   G R   PLR
Sbjct: 61  ERLKKLELGRGRTSGSRPRGPLR 83

>SL9A7_HUMAN (Q96T83) Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7)|
           (NHE-7) (Solute carrier family 9 member 7)
          Length = 725

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/39 (48%), Positives = 20/39 (51%)
 Frame = -3

Query: 191 ARPRGGAASQRPAGTLCWLPFS*LLLGWLERRCAAACGS 75
           ARP  G A+  P   L  LP   LLLGW  R  AAA  S
Sbjct: 7   ARPGSGRATGAPPPRLLLLP---LLLGWGLRVAAAASAS 42

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 96  PSFQPTEQ*STERQPTKRPSRSLRGGAAAGTGVPGRAGTM 215
           PSF+   +       ++ P R LRGG+    G P R G M
Sbjct: 87  PSFESGRRGPPPPPRSRGPPRGLRGGSGGTRGPPSRGGYM 126

>FUMC_NEIMA (Q9JTR0) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 462

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 168 GGAAAGTGVPGRAGTMQSLQDKASEWSGVAAADAFAIDEVNVFEALGG 311
           GG A GTG+       +    K +E SG+    A      N FEALGG
Sbjct: 227 GGTAVGTGLNSHPEYAEKAAAKLAELSGLPFVSA-----PNKFEALGG 269

>NG06_SCHPO (Q9URX8) Probable nucleoporin C890.06|
          Length = 1315

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 113 GWLERRCAAACGSGDALHHFIPAGQSGGEH 24
           GW  RRC+    +G    +FIP+  S G H
Sbjct: 215 GWFSRRCSKINITGSVFDNFIPSFFSFGTH 244

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -1

Query: 208 PALPG-TPVPAAAPPLSDRLGRFVGCRSVDYCSVGWKDGARRRAAQAMR 65
           PA PG TP P   PPLS+   +          S G  +  R RAA A R
Sbjct: 229 PAAPGRTPPPPGPPPLSEAAPKPRAAARTPAASAGRIERRRARAAVAGR 277

>FUMC_RHILO (Q983U5) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 465

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 165 RGGAAAGTGVPGRAGTMQSLQDKASEWSGVAAADAFAIDEVNVFEAL 305
           +GG A GTG+    G  + + D+ +  +G+A   A      N FEAL
Sbjct: 229 QGGTAVGTGLNAPVGFAEKVADRIAAITGIAFVTA-----PNKFEAL 270

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = +1

Query: 7   TSPDRACSPPDWPAGIKWWSASPEPHAAAHRLSNQPSSSQLNGSQQSV-----PAGR*EA 171
           +SP R  SP      I+  S +PEP       S  P S +   S +SV     PA +   
Sbjct: 706 SSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPP 765

Query: 172 APP 180
           APP
Sbjct: 766 APP 768

>GPR17_HUMAN (Q13304) Probable P2Y purinoceptor GPR17 (G protein-coupled|
           receptor 17) (P2Y-like receptor) (R12)
          Length = 367

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 58  WWSASPEPHAAAHRLSNQPSSSQLNGSQQSVP 153
           WW+ S +P     +LS   SS  +NG + + P
Sbjct: 6   WWAGSRKPPREMLKLSGSDSSQSMNGLEVAPP 37

>H2B1_PARAN (P02290) Histone H2B.1, sperm|
          Length = 144

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 108 PTEQ*STERQPTKR-PSRSLRGGAAAGTGVPGRAG 209
           PT++  T+R PTKR P +  +GG  A  G  G+AG
Sbjct: 6   PTKRSPTKRSPTKRSPQKGGKGGKGAKRG--GKAG 38

>GLBL_TYLHE (P18207) Giant extracellular hemoglobin linker 1 chain|
          Length = 253

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +1

Query: 16  DRACSPPD----WPAGIKWWSASPEPHAAAHRLSNQ 111
           D AC  P     W  G+   SA  +PH A  RL+NQ
Sbjct: 9   DCACDRPSPRGYWGGGMTGRSAFADPHIAEGRLANQ 44

>AFF1_MOUSE (O88573) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4)
          Length = 1217

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +1

Query: 31  PPDWPAGIKWWSASPEPHAAAHRLSNQPSSSQLNGSQQS 147
           PP  PA        PEP A+AH  S +  SS+ + S  S
Sbjct: 429 PPSPPAPPSAPQTLPEPVASAHSSSGESESSESDSSSDS 467

>PNUT_DROME (P40797) Protein peanut|
          Length = 539

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 174 AAAGTGV-PGRAGTMQSLQDKASEWSGVAAADAFAIDEVNVFE 299
           A +G G+ P     MQSL DK +    +A AD    DEV++F+
Sbjct: 259 APSGHGLLPLDIACMQSLSDKVNLVPVIAKADTMTPDEVHLFK 301

>DXR_PSEF5 (Q4KHH0) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC|
           1.1.1.267) (DXP reductoisomerase)
           (1-deoxyxylulose-5-phosphate reductoisomerase)
           (2-C-methyl-D-erythritol 4-phosphate synthase)
          Length = 396

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 4   HTSPDRACSPPDWPAGIK 57
           H SP++AC+ P+W  G K
Sbjct: 198 HVSPEQACAHPNWSMGRK 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.129    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,791,675
Number of Sequences: 219361
Number of extensions: 983183
Number of successful extensions: 4429
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 4143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4424
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)