ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet07d06 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 172 bits (435), Expect = 4e-43 Identities = 93/139 (66%), Positives = 93/139 (66%) Frame = +1 Query: 19 MVLQLLPSTLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXX 198 M LQLLPSTLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 1 MALQLLPSTLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPG 60 Query: 199 XXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXXXXXG 378 KKTLRQGVVVIT ETGKWHVVMACRDFL G Sbjct: 61 STASSPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAG 120 Query: 379 MADGSYTVMHLDLASLDSV 435 MADGSYTVMHLDLASLDSV Sbjct: 121 MADGSYTVMHLDLASLDSV 139
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 171 bits (432), Expect = 9e-43 Identities = 92/139 (66%), Positives = 92/139 (66%) Frame = +1 Query: 19 MVLQLLPSTLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXX 198 M LQLLPSTLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 1 MALQLLPSTLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPG 60 Query: 199 XXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXXXXXG 378 KKTLRQGVVVIT ETGKWHVVMACRDFL G Sbjct: 61 SATAKPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAG 120 Query: 379 MADGSYTVMHLDLASLDSV 435 MADGSYTVMHLDLASLDSV Sbjct: 121 MADGSYTVMHLDLASLDSV 139
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 86.3 bits (212), Expect = 3e-17 Identities = 56/147 (38%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Frame = +1 Query: 31 LLPSTLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXX 174 +LP++ S+PK+G +GA ++KD+ F GVSS K S A+R + Sbjct: 8 MLPASFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAE 64 Query: 175 XXXXXXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXX 354 KKTLR+G VVIT E+GKWHV+MACRD+L Sbjct: 65 TAAPATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKA 124 Query: 355 XXXXXXXGMADGSYTVMHLDLASLDSV 435 G+A +YT+MHLDLASLDSV Sbjct: 125 ARAAKSAGLAKENYTIMHLDLASLDSV 151
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 84.7 bits (208), Expect = 9e-17 Identities = 55/147 (37%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Frame = +1 Query: 31 LLPSTLSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXX 174 L+ LS+PK+G S +V +KD++ F G+S K++ +S +R + Sbjct: 8 LVSPALSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQ 64 Query: 175 XXXXXXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXX 354 KKTLR+G VVIT ETGKWHV+MACRDFL Sbjct: 65 TTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKA 124 Query: 355 XXXXXXXGMADGSYTVMHLDLASLDSV 435 G+ +YTVMHLDLASLDSV Sbjct: 125 ERAAKSAGITKENYTVMHLDLASLDSV 151
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 84.3 bits (207), Expect = 1e-16 Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 9/143 (6%) Frame = +1 Query: 34 LPSTLSVPKKGSSMGAV--------AVKDTAAFLGVSSK-AKKASLAVRTQXXXXXXXXX 186 LPS LS K+G++ + +K A LG+ +K +S+A+R Q Sbjct: 10 LPSALSARKEGAAKDSAFFGVRLADGLKLDATSLGLRTKRVNTSSVAIRAQAAAVSAPTA 69 Query: 187 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXX 366 KKT+R G +IT E+GKWHV+MACRD+L Sbjct: 70 TPASPAG-----KKTVRTGNAIITGASSGLGLATAKALAESGKWHVIMACRDYLKTARAA 124 Query: 367 XXXGMADGSYTVMHLDLASLDSV 435 GM GSYT++HLDLASLDSV Sbjct: 125 RAAGMPKGSYTIVHLDLASLDSV 147
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 84.0 bits (206), Expect = 1e-16 Identities = 51/145 (35%), Positives = 68/145 (46%), Gaps = 11/145 (7%) Frame = +1 Query: 34 LPSTLSVPKKGSSMGAVAVKDTAAFLGV-----------SSKAKKASLAVRTQXXXXXXX 180 LPS+ S+ K+G + V++K+T+ F GV S + ++ + Sbjct: 9 LPSSFSINKEGKAN--VSLKETSLF-GVTFSDSLRTDFSSLRTRRGCRQISQTGAIRSQA 65 Query: 181 XXXXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXX 360 KKTLR+G V+IT ETGKWHV+MACRDFL Sbjct: 66 VATTPSVNRATGEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAER 125 Query: 361 XXXXXGMADGSYTVMHLDLASLDSV 435 GM +YT+MHLDLASLDSV Sbjct: 126 AAKSAGMPKENYTIMHLDLASLDSV 150
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 81.6 bits (200), Expect = 7e-16 Identities = 40/71 (56%), Positives = 43/71 (60%) Frame = +1 Query: 223 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXXXXXGMADGSYTV 402 KKTLR+G VV+T ETGKWHV+MACRDFL GM SYTV Sbjct: 87 KKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAQSAGMPKDSYTV 146 Query: 403 MHLDLASLDSV 435 MHLDLASLDSV Sbjct: 147 MHLDLASLDSV 157
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 80.9 bits (198), Expect = 1e-15 Identities = 40/64 (62%), Positives = 40/64 (62%) Frame = +1 Query: 244 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXXXXXGMADGSYTVMHLDLAS 423 VVVIT ETGKWHVVMACRDFL GMADGSYTVMHLDLAS Sbjct: 1 VVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKASKAAKAAGMADGSYTVMHLDLAS 60 Query: 424 LDSV 435 LDSV Sbjct: 61 LDSV 64
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 78.6 bits (192), Expect = 6e-15 Identities = 39/71 (54%), Positives = 43/71 (60%) Frame = +1 Query: 223 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXXXXXGMADGSYTV 402 KKTLR+G VV+T ETGKW+V+MACRDFL GM SYTV Sbjct: 83 KKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKAERAAKSVGMPKDSYTV 142 Query: 403 MHLDLASLDSV 435 MHLDLASLDSV Sbjct: 143 MHLDLASLDSV 153
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 75.1 bits (183), Expect = 7e-14 Identities = 52/149 (34%), Positives = 67/149 (44%), Gaps = 14/149 (9%) Frame = +1 Query: 31 LLPSTLSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAV----------RTQXXX 168 LLPST+S+ K+G ++ K+T F G S +A+K S + R Sbjct: 9 LLPSTISIQKEGKFNASL--KETT-FTGSSFSNHLRAEKISTLLTIKEQRRQKPRFSTGI 65 Query: 169 XXXXXXXXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 348 KKT R+G VIT +TGKWHV+MACR+FL Sbjct: 66 RAQTVTATPPANEASPEQKKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRNFL 125 Query: 349 XXXXXXXXXGMADGSYTVMHLDLASLDSV 435 GM+ YTVMHLDLASL+SV Sbjct: 126 KAEKAARSVGMSKEDYTVMHLDLASLESV 154
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 65.5 bits (158), Expect = 5e-11 Identities = 40/143 (27%), Positives = 57/143 (39%) Frame = +1 Query: 7 SPSSMVLQLLPSTLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXX 186 S SS L S + K S+ + + + A F G + ++++ Sbjct: 68 SVSSAALSQNVSVSNNATKESAFLGLRMGEVAKFGGALLSVSTVAANLKSKPGVLSVNAV 127 Query: 187 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXX 366 KKT + +IT +TG+WHV+MACRDFL Sbjct: 128 TAPAETMNKPSSKKTATKSTCIITGASSGLGLATAKALADTGEWHVIMACRDFLKAERAA 187 Query: 367 XXXGMADGSYTVMHLDLASLDSV 435 G+ SYTV+H DLAS DSV Sbjct: 188 RSVGIPKDSYTVIHCDLASFDSV 210
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 62.4 bits (150), Expect = 5e-10 Identities = 29/69 (42%), Positives = 38/69 (55%) Frame = +1 Query: 229 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXXXXXGMADGSYTVMH 408 T ++ +IT TG+WHVVMACRDFL GM GSY+++H Sbjct: 82 TQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFLKAEQAAKKVGMPAGSYSILH 141 Query: 409 LDLASLDSV 435 LDL+SL+SV Sbjct: 142 LDLSSLESV 150
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 50.8 bits (120), Expect = 1e-06 Identities = 27/63 (42%), Positives = 32/63 (50%) Frame = +1 Query: 247 VVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXXXXXGMADGSYTVMHLDLASL 426 VVIT + G WHVVMACR+ GM+ SYT+MH+DL SL Sbjct: 9 VVITGASSGVGLYAAKALVKRG-WHVVMACRNLEKADSAAKSLGMSPDSYTLMHIDLGSL 67 Query: 427 DSV 435 DSV Sbjct: 68 DSV 70
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/63 (34%), Positives = 28/63 (44%) Frame = +1 Query: 247 VVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLXXXXXXXXXGMADGSYTVMHLDLASL 426 V+IT + G WHV+MACR+ G SYT++ LDL L Sbjct: 9 VIITGASSGVGLYGAKALIDKG-WHVIMACRNLDKTQKVADELGFPKDSYTIIKLDLGYL 67 Query: 427 DSV 435 DSV Sbjct: 68 DSV 70
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.8 bits (68), Expect = 1.5 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -3 Query: 242 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 141 P V+L LGD + P + + G+ VAT TAS Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 209 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 72 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 203 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 81 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>CNX1_ARATH (Q39054) Molybdopterin biosynthesis CNX1 protein (Molybdenum| cofactor biosynthesis enzyme CNX1) Length = 670 Score = 29.6 bits (65), Expect = 3.3 Identities = 21/48 (43%), Positives = 28/48 (58%) Frame = +1 Query: 4 SSPSSMVLQLLPSTLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLA 147 S S+ L LP+T +V GSS+ A+ V D +AF S KKASL+ Sbjct: 405 SMRSANALLELPATGNVLSAGSSVSAIIVSDISAF----SIDKKASLS 448
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 5.7 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 230 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 141 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 7.4 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -3 Query: 203 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 81 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123
>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)| Length = 37 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 182 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 78 T A A LTA++A A LT +AA + ATA Sbjct: 2 TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 203 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 81 VEP L+ T E V T V+ + + F + TP AV ++T Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.127 0.347 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,128,374 Number of Sequences: 219361 Number of extensions: 232428 Number of successful extensions: 1036 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1028 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1033 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
