Clone Information

BLAST Search Result

Clone Name	baet07c12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HEM2_HORVU (Q42836) Delta-aminolevulinic acid dehydratase, chlor...	61	7e-10
2	HEM2_PHYPA (Q43058) Delta-aminolevulinic acid dehydratase, chlor...	55	4e-08
3	HEM2_SPIOL (P24493) Delta-aminolevulinic acid dehydratase, chlor...	53	2e-07
4	HEM2_SELMA (P45623) Delta-aminolevulinic acid dehydratase, chlor...	48	6e-06
5	HEM2_ARATH (Q9SFH9) Delta-aminolevulinic acid dehydratase, chlor...	44	1e-04
6	HEM2_SOYBN (P43210) Delta-aminolevulinic acid dehydratase, chlor...	33	0.12
7	HEM2_PEA (P30124) Delta-aminolevulinic acid dehydratase, chlorop...	33	0.16
8	CO6A1_CHICK (P20785) Collagen alpha-1(VI) chain precursor	31	0.80
9	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	31	0.80
10	BUR1_NEUCR (Q871M9) Serine/threonine-protein kinase bur-1 (EC 2....	30	1.4
11	ALL5_HEVBR (Q39967) Major latex allergen Hev b 5	24	1.7
12	XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG pr...	29	2.3
13	PIVA2_ADE07 (P03273) Maturation protein (Protein IVA2)	29	3.0
14	CGRE1_HUMAN (Q99674) Cell growth regulator with EF hand domain 1...	29	3.0
15	FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger prote...	29	3.0
16	Y6022_STRCO (O69852) Exopolysaccharide phosphotransferase SCO602...	29	3.0
17	XRCC1_MOUSE (Q60596) DNA-repair protein XRCC1 (X-ray repair cros...	29	3.0
18	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	29	3.0
19	FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7....	28	4.0
20	HEN1_HUMAN (Q02575) Helix-loop-helix protein 1 (HEN1) (Nescient ...	28	5.2
21	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	28	5.2
22	CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP ...	28	5.2
23	HXA2_HUMAN (O43364) Homeobox protein Hox-A2	28	5.2
24	GA2L1_MOUSE (Q8JZP9) GAS2-like protein 1 (Growth arrest-specific...	28	5.2
25	CEBPB_HUMAN (P17676) CCAAT/enhancer-binding protein beta (C/EBP ...	28	5.2
26	XRCC1_RAT (Q9ESZ0) DNA-repair protein XRCC1 (X-ray repair cross-...	28	5.2
27	K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)	28	5.2
28	B4GT1_MOUSE (P15535) Beta-1,4-galactosyltransferase 1 (EC 2.4.1....	28	5.2
29	SSBP3_MOUSE (Q9D032) Single-stranded DNA-binding protein 3 (Sequ...	28	6.8
30	SSBP3_HUMAN (Q9BWW4) Single-stranded DNA-binding protein 3 (Sequ...	28	6.8
31	CD2A2_MONDO (O77618) Cyclin-dependent kinase inhibitor 2A, isofo...	28	6.8
32	SSBP3_RAT (Q9R050) Single-stranded DNA-binding protein 3 (Sequen...	28	6.8
33	FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger prote...	28	6.8
34	ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing prote...	28	6.8
35	IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Ir...	28	6.8
36	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	28	6.8
37	SSBP3_CHICK (Q98948) Single-stranded DNA-binding protein 3 (Sequ...	28	6.8
38	IF2_THEFY (Q47RV1) Translation initiation factor IF-2	28	6.8
39	GID_SYNP6 (Q5N5J0) tRNA uridine 5-carboxymethylaminomethyl modif...	28	6.8
40	CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor	27	8.8
41	EVX1_HUMAN (P49640) Homeobox even-skipped homolog protein 1 (EVX-1)	27	8.8
42	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	27	8.8
43	IF2_CORGL (Q8NP40) Translation initiation factor IF-2	27	8.8
44	IF2_CAUCR (Q9AC25) Translation initiation factor IF-2	27	8.8
45	XRCC1_CRIGR (O54935) DNA-repair protein XRCC1 (X-ray repair cros...	27	8.8
46	WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin...	27	8.8
47	CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)	27	8.8
48	ADA1D_HUMAN (P25100) Alpha-1D adrenergic receptor (Alpha 1D-adre...	27	8.8

>HEM2_HORVU (Q42836) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH)
          Length = 428

 Score = 60.8 bits (146), Expect = 7e-10
 Identities = 34/64 (53%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +1

Query: 223 QARSGRTIEECEADAVAGKFPAAPPPTR-PQALSGTPEIRPLDMXXXXXXXXXXXXXXXX 399
           +A SGR+IEECEADAVAG+FPA     + P+A  GTPEIRPLDM                
Sbjct: 57  RAPSGRSIEECEADAVAGRFPAPSCVCQTPKAPDGTPEIRPLDMAKRPRRNRRSPALRAA 116

Query: 400 FQET 411
           FQET
Sbjct: 117 FQET 120

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>HEM2_PHYPA (Q43058) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH)
          Length = 430

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 31/61 (50%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 232 SGRTIEECEADAVAGKFPAAPP-PTRPQALSGTPEIRPLDMXXXXXXXXXXXXXXXXFQE 408
           S RTIEECEA+ VAG  PAAPP P +P A  GTP I PL M                FQE
Sbjct: 66  SPRTIEECEANVVAGNAPAAPPVPAKPSAPEGTPAISPLVMPARPRRNRRSPALRAAFQE 125

Query: 409 T 411
           T
Sbjct: 126 T 126

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>HEM2_SPIOL (P24493) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH) (ALAD)
          Length = 433

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 223 QARSGRTIEECEADAVAGKFPAAPP-PTRPQALSGTPEIRPLDMXXXXXXXXXXXXXXXX 399
           Q ++G +IEECEA  VAG  P+APP P  P+A SGTP + PL +                
Sbjct: 65  QQKTGLSIEECEAAVVAGNAPSAPPVPPTPKAPSGTPSVSPLSLGRRPRRNRTSPVFRAA 124

Query: 400 FQET 411
           FQET
Sbjct: 125 FQET 128

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>HEM2_SELMA (P45623) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH) (ALAD)
          Length = 417

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 232 SGRTIEECEADAVAGKFPAAP-PPTRPQALSGTPEIRPLDMXXXXXXXXXXXXXXXXFQE 408
           S RTI ECEAD V+G  PAAP  P + +A  GTP ++PL +                FQE
Sbjct: 52  SPRTIHECEADVVSGNPPAAPAAPAKAKAPPGTPVVKPLRLTSRPRRNRKSAALRDAFQE 111

Query: 409 T 411
           T
Sbjct: 112 T 112

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>HEM2_ARATH (Q9SFH9) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH)
          Length = 430

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 235 GRTIEECEADAVAGKFPAAPP-PTRPQALSGTPEIRPLDMXXXXXXXXXXXXXXXXFQET 411
           G +  ECEA   AG  P APP P +P A  GTP I+PL++                FQET
Sbjct: 65  GMSDAECEAAVAAGNVPEAPPVPPKPAAPVGTPIIKPLNLSRRPRRNRASPVTRAAFQET 124

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>HEM2_SOYBN (P43210) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH)
          Length = 412

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +1

Query: 250 ECEADAVAGKFPAAPP-PTRPQALSGTPEIRPLDMXXXXXXXXXXXXXXXXFQET 411
           E EA  VAGK P APP   RP A  GTP +  L +                FQET
Sbjct: 52  EFEAAVVAGKVPPAPPVRPRPAAPVGTPVVPSLPLHRRPRRNRKSPALRSAFQET 106

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>HEM2_PEA (P30124) Delta-aminolevulinic acid dehydratase, chloroplast|
           precursor (EC 4.2.1.24) (Porphobilinogen synthase)
           (ALADH) (Fragment)
          Length = 398

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 256 EADAVAGKFPAAPP-PTRPQALSGTPEIRPLDMXXXXXXXXXXXXXXXXFQET 411
           EA  VAGK P APP P  P + +GTP +  L +                FQET
Sbjct: 40  EAAVVAGKVPEAPPVPPTPASPAGTPVVPSLPIQRRPRRNRRSPALRSAFQET 92

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>CO6A1_CHICK (P20785) Collagen alpha-1(VI) chain precursor|
          Length = 1019

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 312 GPQRHPGDQAPRHGEAPSPEPEVAGAPGSVPGD 410
           GP+ + GD  PR  E P   P   GAPG +PGD
Sbjct: 471 GPKGYRGDDGPRGNEGPKGSP---GAPG-LPGD 499

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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
 Frame = +3

Query: 312 GPQRHPGDQAPRHGEAPSPEPEVA------GAPGSVPG 407
           GP+  PG  APR G  P P P  A      G P   PG
Sbjct: 211 GPRPGPGQGAPRPGATPGPRPAAAQGGPRPGGPRPSPG 248

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>BUR1_NEUCR (Q871M9) Serine/threonine-protein kinase bur-1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 545

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 195 GAGPRSHGPGSRDGPQRRGP 136
           G+GP  H  G RD P RRGP
Sbjct: 438 GSGPMDHTDGYRDRPPRRGP 457

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>ALL5_HEVBR (Q39967) Major latex allergen Hev b 5|
          Length = 150

 Score = 24.3 bits (51), Expect(2) = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 309 AGPQRHPGDQAPRHGEAPSPEPEVA 383
           A P++     AP   EAP+PE E A
Sbjct: 44  ATPEKEEPTAAPAEPEAPAPETEKA 68



 Score = 24.3 bits (51), Expect(2) = 1.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 241 TIEECEADAVAGKFPAAPPPTRPQALSGTPE 333
           T E  +A+    + PAAPP +  +    TPE
Sbjct: 17  TPEVTKAEETKTEEPAAPPASEQETADATPE 47

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>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)|
          Length = 439

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPG 407
           AP  GEAP+P P   GAP    G
Sbjct: 300 APAEGEAPAPAPAEGGAPSPAEG 322



 Score = 28.9 bits (63), Expect = 3.0
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
 Frame = +3

Query: 306 AAGPQRHPGD-----QAPRHGEAPSPEPEVAGAPGSVPGD 410
           A G +  P D      AP  G AP+P P   GAP   P +
Sbjct: 68  AEGAEPAPADGGAPAPAPAEGGAPAPAPAEGGAPAPAPAE 107



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 303 QAAGPQRHPGDQ-APRHGEAPSPEPEVAGAPGSVPGD 410
           +A  P    G+  AP  GEAP+P P    AP   P +
Sbjct: 277 EAPAPAPAEGEAPAPAEGEAPAPAPAEGEAPAPAPAE 313



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 303 QAAGPQRHPGDQ-APRHGEAPSPEPEVAGAPGSVPGD 410
           +A  P    G+  AP  GEAP+P P    AP   P +
Sbjct: 137 EAPAPAPAEGEAPAPAEGEAPAPAPAEVEAPAPAPAE 173



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 262 APAEGEAPAPAPAEGEAPAPAPAE 285



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 252 APAEGEAPAPAPAEGEAPAPAPAE 275



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 242 APAEGEAPAPAPAEGEAPAPAPAE 265



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 232 APAEGEAPAPAPAEGEAPAPAPAE 255



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 222 APAEGEAPAPAPAEGEAPAPAPAE 245



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 212 APAEGEAPAPAPAEGEAPAPAPAE 235



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 180 APAEGEAPAPAPAEGEAPAPAPAE 203



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 170 APAEGEAPAPAPAEGEAPAPAPAE 193



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSVPGD 410
           AP  GEAP+P P    AP   P +
Sbjct: 122 APAEGEAPAPAPAEGEAPAPAPAE 145

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>PIVA2_ADE07 (P03273) Maturation protein (Protein IVA2)|
          Length = 448

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 300 DQAAGPQRHPGDQAPRHGEAPSPEPEVAGAPGSVPG 407
           +  A P++ P  +AP H +  +P+ + A   GS PG
Sbjct: 17  ESEAHPRKRPTRRAPLHRDGNNPDSDAATMEGSDPG 52

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>CGRE1_HUMAN (Q99674) Cell growth regulator with EF hand domain 1 (Cell growth|
           regulatory gene 11 protein)
          Length = 301

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 303 QAAGPQRHPGDQAPRHGEAPSPEPEVAG---APGSVPG 407
           ++  P + PG QA   G+ P P  E  G   A G  PG
Sbjct: 200 ESLDPVQEPGGQAEADGDVPGPRGEAEGQAEAKGDAPG 237

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>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype 1)|
            (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
 Frame = +3

Query: 306  AAGPQRHPGDQAPRHGEAPSPE-------PEVAGAPGSVP 404
            AA PQ  PG + PR G  P P+       P  A AP +VP
Sbjct: 905  AASPQ--PGSRGPRDGLGPEPQEPPPGPPPSPAAAPEAVP 942

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>Y6022_STRCO (O69852) Exopolysaccharide phosphotransferase SCO6022 (EC 2.7.-.-)|
           (Stealth protein SCO6022)
          Length = 540

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = +3

Query: 306 AAGPQRHPGDQAPRHGEA-----PSPEPEV-AGAPGSVPGD 410
           AAGPQ +  D   R GEA     P P+ +V +G PG+ P D
Sbjct: 406 AAGPQPYRADTLTRLGEAGARSLPVPDEQVLSGVPGTHPMD 446

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>XRCC1_MOUSE (Q60596) DNA-repair protein XRCC1 (X-ray repair cross-complementing|
           protein 1)
          Length = 631

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 303 QAAGPQRHPGDQAPRHGEAPSPEPE 377
           QAAGP   P    P+  +APSP P+
Sbjct: 440 QAAGPSSPPRPPTPKETKAPSPGPQ 464

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
 Frame = +3

Query: 300  DQAAGPQRHPGDQAPR--------HGEAPSPEPEVAGAPGSVPG 407
            D +AGP   PG   PR         GE   P   V GAPG VPG
Sbjct: 2718 DGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPG-VPG 2760

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>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 265 AVAGKFPAAPPPTRPQALSGTPEIRP 342
           A+AG  P APPP  P A    P + P
Sbjct: 132 AIAGARPVAPPPAPPPAPVAAPVVTP 157

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>HEN1_HUMAN (Q02575) Helix-loop-helix protein 1 (HEN1) (Nescient helix loop|
           helix 1) (NSCL-1)
          Length = 133

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 195 GAGPRSHGPGSRDGPQRRGP 136
           GAGP   GPG   G Q RGP
Sbjct: 29  GAGPDGAGPGGPGGGQARGP 48

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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 312 GPQRHPGDQAPRHGEAPSPEPEVAGAPGSVPG 407
           GP+  PG+Q PR  + P       GA G++ G
Sbjct: 224 GPKGDPGEQGPRGPQGPPGPVPSTGAKGTIIG 255

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>CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP beta)|
          Length = 348

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 306 AAGPQRHPGDQAPRHGEAPSPEP--EVAGAPGSVPGD 410
           AA    HPG  AP H   P P P  E+   PG  P D
Sbjct: 147 AAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPAD 183

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>HXA2_HUMAN (O43364) Homeobox protein Hox-A2|
          Length = 376

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 315 PQRHPGDQAPRHGEAPSPEPEVAGAPGS 398
           P  +PG   PRHG    P+P  AG+ GS
Sbjct: 57  PSLNPGSH-PRHGAGGRPKPSPAGSRGS 83

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>GA2L1_MOUSE (Q8JZP9) GAS2-like protein 1 (Growth arrest-specific 2-like 1)|
          Length = 678

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 339 APRHGEAPSPEPEVAGAPGSV 401
           APR    PSP PE+A  P S+
Sbjct: 485 APRPSRGPSPGPELAATPASI 505

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>CEBPB_HUMAN (P17676) CCAAT/enhancer-binding protein beta (C/EBP beta) (Nuclear|
           factor NF-IL6) (Transcription factor 5)
          Length = 345

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 306 AAGPQRHPGDQAPRHGEAPSPEP--EVAGAPGSVPGD 410
           AA    HPG  AP H   P P P  E+   PG  P D
Sbjct: 147 AAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPAD 183

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>XRCC1_RAT (Q9ESZ0) DNA-repair protein XRCC1 (X-ray repair cross-complementing|
           protein 1)
          Length = 631

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 303 QAAGPQRHPGDQAPRHGEAPSPEPE 377
           QAAGP   P    P   +APSP P+
Sbjct: 440 QAAGPSSPPRPPTPEETKAPSPGPQ 464

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>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)|
          Length = 1157

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 189 GPRSHGPGSRDGPQRRGPPSVL 124
           GP  H PG RD PQ  G P  L
Sbjct: 489 GPNRHEPGGRDPPQHFGGPPPL 510

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>B4GT1_MOUSE (P15535) Beta-1,4-galactosyltransferase 1 (EC 2.4.1.-)|
           (Beta-1,4-GalTase 1) (Beta4Gal-T1) (b4Gal-T1)
           (UDP-galactose:beta-N-acetylglucosamine
           beta-1,4-galactosyltransferase 1) (UDP-Gal:beta-GlcNAc
           beta-1,4-galactosyltransferase 1) [Includes: L
          Length = 399

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
 Frame = +3

Query: 306 AAGPQRHPGDQAPRH-------GEAPSPEPEVAGAPGSVPG 407
           AA  ++ PG+Q PR        G +P P P +  +PG+  G
Sbjct: 67  AAASKQPPGEQRPRGARPPPPLGVSPKPRPGLDSSPGAASG 107

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>SSBP3_MOUSE (Q9D032) Single-stranded DNA-binding protein 3 (Sequence-specific|
           single-stranded-DNA-binding protein) (Lck-associated
           signal transducer)
          Length = 388

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 201 PLGAGPRSHGPGSRDGPQRRGP 136
           P+G GP+++G G R  P   GP
Sbjct: 211 PMGPGPQNYGSGMRPPPNSLGP 232

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>SSBP3_HUMAN (Q9BWW4) Single-stranded DNA-binding protein 3 (Sequence-specific|
           single-stranded-DNA-binding protein)
          Length = 388

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 201 PLGAGPRSHGPGSRDGPQRRGP 136
           P+G GP+++G G R  P   GP
Sbjct: 211 PMGPGPQNYGSGMRPPPNSLGP 232

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>CD2A2_MONDO (O77618) Cyclin-dependent kinase inhibitor 2A, isoform 2 (p19ARF)|
          Length = 155

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -3

Query: 406 PGTLPGAPATSGSGEGASPCRG-A*SPGC 323
           PG LPG    + SG GA+ C+G   SP C
Sbjct: 96  PGGLPGHSDAAPSGRGAAGCQGLLGSPAC 124

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>SSBP3_RAT (Q9R050) Single-stranded DNA-binding protein 3 (Sequence-specific|
           single-stranded-DNA-binding protein)
          Length = 361

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 201 PLGAGPRSHGPGSRDGPQRRGP 136
           P+G GP+++G G R  P   GP
Sbjct: 184 PMGPGPQNYGSGMRPPPNSLGP 205

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>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 995

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 300 DQAAGPQRHPGDQAPRHGEAPSPEPEVAGAPGSVP 404
           D  AG +    D +P+  EAP PE      P S P
Sbjct: 18  DMEAGEEAKAMDSSPKEQEAPDPEAPAIEEPPSPP 52

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>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 309 AGP--QRHPGDQAPRHGEAPSPEPEVAGAPGSV 401
           AGP   +H G Q+P  G   S     AGAPGS+
Sbjct: 248 AGPCFDQHGGQQSPGMGMMHSASAAAAGAPGSM 280

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>IRX1_HUMAN (P78414) Iroquois-class homeodomain protein IRX-1 (Iroquois|
           homeobox protein 1) (Homeodomain protein IRXA1)
          Length = 480

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 324 HPGDQAPRHGEAPSPEPEVAGAPGSVPGD 410
           H     P     P P+P VA APG++ GD
Sbjct: 398 HAAPHGPHLPAPPPPQPPVAIAPGALNGD 426

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
 Frame = +3

Query: 327  PGDQAPRHGEAPSPEPEVAGAPGSV------PGD 410
            PGDQ P   + P   P   G PGSV      PGD
Sbjct: 1260 PGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGD 1293



 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 306  AAGPQRHPGDQAPRHGEAPSPEPEVAGAPGSVPGD 410
            A+G Q  PG Q PR G    P P  +  P   PGD
Sbjct: 1101 ASGEQGLPGIQGPR-GSPGRPGPPGSSGPPGCPGD 1134

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>SSBP3_CHICK (Q98948) Single-stranded DNA-binding protein 3 (Sequence-specific|
           single-stranded-DNA-binding protein)
          Length = 368

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 201 PLGAGPRSHGPGSRDGPQRRGP 136
           P+G GP+++G G R  P   GP
Sbjct: 191 PMGPGPQNYGSGMRPPPNSLGP 212

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>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 15/47 (31%)
 Frame = +3

Query: 312 GPQRHPGDQAPRHG--------------EAPSPEPEVAGA-PGSVPG 407
           GP+ HPG   PR G              +AP P P  AG  PGS  G
Sbjct: 190 GPRPHPGMMPPRPGASAGGPPRPQAPRPQAPRPGPGTAGGRPGSSAG 236

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>GID_SYNP6 (Q5N5J0) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 466

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 377 LRFRRGRFAMSRGLISGVPLRACGLVGGGAAGNFPATASASHSSMVLPD 231
           L+FR+    ++ G + G    +  + GG  AG   A  +   S +VLPD
Sbjct: 340 LQFRQRPTLLAAGQLIGTEGYSAAVAGGWLAGTNAARLALGRSPLVLPD 388

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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 312 GPQRHPGDQAPRHGEAPSPEPEVAGAPGSVPG 407
           GP+  PG Q PR    P  +  + G PG +PG
Sbjct: 102 GPKGDPGPQGPRGPVGPPGQDGIPGQPG-LPG 132

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>EVX1_HUMAN (P49640) Homeobox even-skipped homolog protein 1 (EVX-1)|
          Length = 407

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +3

Query: 312 GPQRHPGDQAPRHGEAPSPEPEVAGAPGSVPG 407
           GP+  P D        P  EP+VAGA    PG
Sbjct: 64  GPEEEPVDGLAGSAAGPGAEPQVAGAAMLGPG 95

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 312 GPQRHPGDQAPRHGEAPSPEPEVAGAPG-SVPG 407
           GP++ PG   P+ G+ P   P+  G PG S PG
Sbjct: 197 GPKQGPGPGGPKGGKMPG-GPKPGGGPGLSTPG 228



 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 303 QAAGPQRHPGDQAPRHGEAPSPEPEVAGA-PGSVPG 407
           Q  GP    G   P    AP   P  +GA PGS PG
Sbjct: 113 QGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPG 148



 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 303 QAAGPQRHPGDQAPRHGEAPSPEPEVAGAPGSVPGD 410
           Q   PQ+ P  Q P H   P P+P     P   P D
Sbjct: 70  QQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQD 105

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>IF2_CORGL (Q8NP40) Translation initiation factor IF-2|
          Length = 1004

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 309 AGPQRHPGDQAPRHGEAPSPEPEVAGAPGS 398
           A P   PG +APR G  P P  + A  PG+
Sbjct: 170 AEPAAKPGAEAPRPGGMPRPMGKPAPKPGA 199

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>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 306 AAGPQRHPGDQAPRHGEAPSPE--PEVAGAPGSVPG 407
           A+G    P     RHGEAP+P   P   G  GS  G
Sbjct: 55  ASGNLAAPSSAERRHGEAPAPRPAPPQGGGGGSAGG 90

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>XRCC1_CRIGR (O54935) DNA-repair protein XRCC1 (X-ray repair cross-complementing|
           protein 1)
          Length = 633

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 303 QAAGPQRHPGDQAPRHGEAPSPEPE 377
           QAAGP        P+  ++PSPEP+
Sbjct: 442 QAAGPSSPQRPPTPKETKSPSPEPQ 466

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>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 315 PQRHPGDQAPRHGEAPSPEPEVAGAPGSVP 404
           P    G   P+    P P P+V   P S+P
Sbjct: 155 PGHRSGPPEPQRNRMPPPRPDVGSKPDSIP 184

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>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)|
          Length = 453

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
 Frame = +3

Query: 327 PGDQAPRHGEAPSPEPEVAGAPGSV------PGD 410
           PGDQ P   + P   P   G PGSV      PGD
Sbjct: 23  PGDQGPPGPDGPRGVPGPPGPPGSVDLLKGEPGD 56

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>ADA1D_HUMAN (P25100) Alpha-1D adrenergic receptor (Alpha 1D-adrenoceptor)|
           (Alpha 1D-adrenoreceptor) (Alpha-1A adrenergic receptor)
           (Alpha adrenergic receptor 1a)
          Length = 572

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 300 DQAAGPQRHPGDQAPRHGEAPSPEPEVAGAPGSVPG 407
           D +AG     G      G APS  P V G PG   G
Sbjct: 17  DSSAGGSSAGGGGGSAGGAAPSEGPAVGGVPGGAGG 52


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.128    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,038,120
Number of Sequences: 219361
Number of extensions: 578188
Number of successful extensions: 4936
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 3651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4888
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result