ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet07c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070432.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 8e-61
2dbj|AK060024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 8e-61
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
4dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
5dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
6gb|AY111059.1| Zea mays CL9367_1 mRNA sequence 119 8e-24
7gb|M87839.1|TOBRPL24B Nicotiana tabacum (clone: L24-2) chloropla... 56 1e-04
8gb|M87838.1|TOBL24RPA Nicotiana tabacum (clone: L24-1) chloropla... 56 1e-04
9ref|NM_124841.2| Arabidopsis thaliana structural constituent of ... 44 0.37
10ref|NM_180859.1| Arabidopsis thaliana structural constituent of ... 44 0.37
11emb|AL845422.6| Zebrafish DNA sequence from clone DKEY-105A6 in ... 44 0.37
12gb|BT006573.1| Arabidopsis thaliana At5g54600 gene, complete cds 44 0.37
13emb|BX833712.1|CNS0A1TQ Arabidopsis thaliana Full-length cDNA Co... 44 0.37
14emb|BX832849.1|CNS0A1UM Arabidopsis thaliana Full-length cDNA Co... 44 0.37
15gb|AY086810.1| Arabidopsis thaliana clone 27973 mRNA, complete s... 44 0.37
16dbj|AB016879.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.37
17emb|Y09635.1|ATPLRIBPR A.thaliana mRNA for plastid ribosomal pro... 44 0.37
18gb|BT001990.1| Arabidopsis thaliana 50S ribosomal protein L24, c... 44 0.37
19dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 44 0.37
20ref|NM_106488.2| Arabidopsis thaliana unknown protein AT1G78410 ... 42 1.5
21gb|AY821791.1| Arabidopsis thaliana tobacco rattle virus-induced... 42 1.5
22gb|AY821790.1| Arabidopsis thaliana tobacco rattle virus-induced... 42 1.5
23ref|NM_186473.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
24gb|BT011927.1| Arabidopsis thaliana At1g78410 mRNA sequence 42 1.5
25gb|AY102135.1| Arabidopsis thaliana At1g78410/F3F9_27 mRNA, comp... 42 1.5
26gb|AY070754.1| Arabidopsis thaliana At1g78410/F3F9_27 mRNA, comp... 42 1.5
27dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
28dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
29emb|BX816295.1|CNS0ABXS Arabidopsis thaliana Full-length cDNA Co... 42 1.5
30emb|BX818135.1|CNS0ABAB Arabidopsis thaliana Full-length cDNA Co... 42 1.5
31gb|AF548364.1| Metapenaeus ensis vitellogenin mRNA, complete cds 42 1.5
32gb|AF548363.1| Metapenaeus ensis vitellogenin gene, complete cds 42 1.5
33gb|AY085552.1| Arabidopsis thaliana clone 157 mRNA, complete seq... 42 1.5
34gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.5
35gb|AC013430.5|AC013430 Genomic sequence for Arabidopsis thaliana... 42 1.5
36dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
37dbj|AK108164.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
38dbj|AK101059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
39gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
40emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123... 42 1.5
41gb|AC110244.10| Mus musculus chromosome 5, clone RP23-247E10, co... 40 5.8
42ref|XM_367978.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 5.8
43emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 40 5.8
44emb|AJ508920.1|PFR508920 Propionibacterium freudenreichii subsp.... 40 5.8
45gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosom... 40 5.8
46ref|XM_645421.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.8
47ref|XM_651630.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 40 5.8
48gb|AC116772.6| Mus musculus chromosome 8, clone RP23-428C21, com... 40 5.8
49gb|AC158588.3| Mus musculus chromosome 5, clone RP24-372I18, com... 40 5.8
50gb|CP000089.1| Dechloromonas aromatica RCB, complete genome 40 5.8
51emb|AL935253.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 5.8
52gb|AE012185.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.8
53dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.8
54gb|AF493787.1| Oryza sativa phosphate transporter (Pht1-1) gene,... 40 5.8
55gb|AC084884.2| Oryza sativa chromosome 10 clone OSJNBa0031A07, c... 40 5.8
56gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.8
57gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.8
58dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
59dbj|AP004311.1| Synechocystis sp. PCC 6803 plasmid pSYSA DNA, co... 40 5.8
60gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 5.8
61gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8 
>dbj|AK070432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054E10, full
           insert sequence
          Length = 858

 Score =  242 bits (122), Expect = 8e-61
 Identities = 244/284 (85%), Gaps = 3/284 (1%)
 Strand = Plus / Plus

                                                                       
Query: 148 gcgagcaccagcgccttctggggcaacccgctcgccgccaccttctcctccgcgccgtct 207
           ||||||||||||  |||||||||| |||||||| ||   |||||| || |||||||| ||
Sbjct: 145 gcgagcaccagcagcttctggggccacccgctctcc---accttcgccgccgcgccggct 201

                                                                       
Query: 208 ggggtcagattcatggccaagacaagcccaatcgaaatgcggcttaagcgatgggaacgg 267
           ||||| | ||| |||  ||||||| |||||||  ||||| ||||||||||||||||  ||
Sbjct: 202 ggggttaaatttatgatcaagacatgcccaattcaaatgaggcttaagcgatgggagagg 261

                                                                       
Query: 268 aagaagtgcaagccaaacagtcttcctatgctgcacaagatgcatgttagggtcggcgac 327
           |||||||| || ||||||||||||||| | ||||||||||||||||||||| | ||||| 
Sbjct: 262 aagaagtgtaaaccaaacagtcttcctgtcctgcacaagatgcatgttaggattggcgat 321

                                                                       
Query: 328 acagtgcaagtcattgcaggtcgtgaaaaaggtaaagttggggaagtcgtacggctttac 387
           ||||| |||||||||||||| ||||| |||||||||||||| |||||    |||||||  
Sbjct: 322 acagtacaagtcattgcaggccgtgagaaaggtaaagttggagaagttacgcggcttttt 381

                                                       
Query: 388 aagcacaacagcactgtgatagtgaaggacctgaacttgaagtc 431
           ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 382 aagcacaacagcactgtaatagtgaaggacttgaacttgaagtc 425
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>dbj|AK060024.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A09, full
           insert sequence
          Length = 861

 Score =  242 bits (122), Expect = 8e-61
 Identities = 244/284 (85%), Gaps = 3/284 (1%)
 Strand = Plus / Plus

                                                                       
Query: 148 gcgagcaccagcgccttctggggcaacccgctcgccgccaccttctcctccgcgccgtct 207
           ||||||||||||  |||||||||| |||||||| ||   |||||| || |||||||| ||
Sbjct: 130 gcgagcaccagcagcttctggggccacccgctctcc---accttcgccgccgcgccggct 186

                                                                       
Query: 208 ggggtcagattcatggccaagacaagcccaatcgaaatgcggcttaagcgatgggaacgg 267
           ||||| | ||| |||  ||||||| |||||||  ||||| ||||||||||||||||  ||
Sbjct: 187 ggggttaaatttatgatcaagacatgcccaattcaaatgaggcttaagcgatgggagagg 246

                                                                       
Query: 268 aagaagtgcaagccaaacagtcttcctatgctgcacaagatgcatgttagggtcggcgac 327
           |||||||| || ||||||||||||||| | ||||||||||||||||||||| | ||||| 
Sbjct: 247 aagaagtgtaaaccaaacagtcttcctgtcctgcacaagatgcatgttaggattggcgat 306

                                                                       
Query: 328 acagtgcaagtcattgcaggtcgtgaaaaaggtaaagttggggaagtcgtacggctttac 387
           ||||| |||||||||||||| ||||| |||||||||||||| |||||    |||||||  
Sbjct: 307 acagtacaagtcattgcaggccgtgagaaaggtaaagttggagaagttacgcggcttttt 366

                                                       
Query: 388 aagcacaacagcactgtgatagtgaaggacctgaacttgaagtc 431
           ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 367 aagcacaacagcactgtaatagtgaaggacttgaacttgaagtc 410
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  200 bits (101), Expect = 3e-48
 Identities = 167/189 (88%)
 Strand = Plus / Minus

                                                                            
Query: 243      aatgcggcttaagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgca 302
                ||||| |||||||||||||||  |||||||||| || ||||||||||||||| | |||||
Sbjct: 28089707 aatgcagcttaagcgatgggagaggaagaagtgtaaaccaaacagtcttcctgtcctgca 28089648

                                                                            
Query: 303      caagatgcatgttagggtcggcgacacagtgcaagtcattgcaggtcgtgaaaaaggtaa 362
                |||||||||||||||| | ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 28089647 caagatgcatgttaggattggcgatacagtacaagtcattgcaggccgtgagaaaggtaa 28089588

                                                                            
Query: 363      agttggggaagtcgtacggctttacaagcacaacagcactgtgatagtgaaggacctgaa 422
                |||||| |||||    |||||||  ||||||||||||||||| |||||||||||| ||||
Sbjct: 28089587 agttggagaagttacgcggctttttaagcacaacagcactgtaatagtgaaggacttgaa 28089528

                         
Query: 423      cttgaagtc 431
                |||||||||
Sbjct: 28089527 cttgaagtc 28089519



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 55/65 (84%), Gaps = 3/65 (4%)
 Strand = Plus / Minus

                                                                            
Query: 148      gcgagcaccagcgccttctggggcaacccgctcgccgccaccttctcctccgcgccgtct 207
                ||||||||||||  |||||||||| |||||||   | |||||||| || |||||||| ||
Sbjct: 28090983 gcgagcaccagcagcttctggggccacccgct---ctccaccttcgccgccgcgccggct 28090927

                     
Query: 208      ggggt 212
                |||||
Sbjct: 28090926 ggggt 28090922
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>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0547F09
          Length = 140615

 Score =  200 bits (101), Expect = 3e-48
 Identities = 167/189 (88%)
 Strand = Plus / Minus

                                                                          
Query: 243    aatgcggcttaagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgca 302
              ||||| |||||||||||||||  |||||||||| || ||||||||||||||| | |||||
Sbjct: 134526 aatgcagcttaagcgatgggagaggaagaagtgtaaaccaaacagtcttcctgtcctgca 134467

                                                                          
Query: 303    caagatgcatgttagggtcggcgacacagtgcaagtcattgcaggtcgtgaaaaaggtaa 362
              |||||||||||||||| | ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 134466 caagatgcatgttaggattggcgatacagtacaagtcattgcaggccgtgagaaaggtaa 134407

                                                                          
Query: 363    agttggggaagtcgtacggctttacaagcacaacagcactgtgatagtgaaggacctgaa 422
              |||||| |||||    |||||||  ||||||||||||||||| |||||||||||| ||||
Sbjct: 134406 agttggagaagttacgcggctttttaagcacaacagcactgtaatagtgaaggacttgaa 134347

                       
Query: 423    cttgaagtc 431
              |||||||||
Sbjct: 134346 cttgaagtc 134338



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 55/65 (84%), Gaps = 3/65 (4%)
 Strand = Plus / Minus

                                                                          
Query: 148    gcgagcaccagcgccttctggggcaacccgctcgccgccaccttctcctccgcgccgtct 207
              ||||||||||||  |||||||||| |||||||   | |||||||| || |||||||| ||
Sbjct: 135802 gcgagcaccagcagcttctggggccacccgct---ctccaccttcgccgccgcgccggct 135746

                   
Query: 208    ggggt 212
              |||||
Sbjct: 135745 ggggt 135741
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>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0009H10
          Length = 175754

 Score =  200 bits (101), Expect = 3e-48
 Identities = 167/189 (88%)
 Strand = Plus / Minus

                                                                         
Query: 243   aatgcggcttaagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgca 302
             ||||| |||||||||||||||  |||||||||| || ||||||||||||||| | |||||
Sbjct: 20613 aatgcagcttaagcgatgggagaggaagaagtgtaaaccaaacagtcttcctgtcctgca 20554

                                                                         
Query: 303   caagatgcatgttagggtcggcgacacagtgcaagtcattgcaggtcgtgaaaaaggtaa 362
             |||||||||||||||| | ||||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 20553 caagatgcatgttaggattggcgatacagtacaagtcattgcaggccgtgagaaaggtaa 20494

                                                                         
Query: 363   agttggggaagtcgtacggctttacaagcacaacagcactgtgatagtgaaggacctgaa 422
             |||||| |||||    |||||||  ||||||||||||||||| |||||||||||| ||||
Sbjct: 20493 agttggagaagttacgcggctttttaagcacaacagcactgtaatagtgaaggacttgaa 20434

                      
Query: 423   cttgaagtc 431
             |||||||||
Sbjct: 20433 cttgaagtc 20425



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 55/65 (84%), Gaps = 3/65 (4%)
 Strand = Plus / Minus

                                                                         
Query: 148   gcgagcaccagcgccttctggggcaacccgctcgccgccaccttctcctccgcgccgtct 207
             ||||||||||||  |||||||||| |||||||   | |||||||| || |||||||| ||
Sbjct: 21889 gcgagcaccagcagcttctggggccacccgct---ctccaccttcgccgccgcgccggct 21833

                  
Query: 208   ggggt 212
             |||||
Sbjct: 21832 ggggt 21828
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>gb|AY111059.1| Zea mays CL9367_1 mRNA sequence
          Length = 666

 Score =  119 bits (60), Expect = 8e-24
 Identities = 155/186 (83%), Gaps = 3/186 (1%)
 Strand = Plus / Minus

                                                                       
Query: 162 cttctggggcaacccgctcgccgccaccttctcctccgcgccgtctggggtcagattcat 221
           |||||||||||||| |||||||   |||| |||| |  ||| | ||||||| || || ||
Sbjct: 656 cttctggggcaaccggctcgcc---acctactccgcgccgcagcctggggtaaggtttat 600

                                                                       
Query: 222 ggccaagacaagcccaatcgaaatgcggcttaagcgatgggaacggaagaagtgcaagcc 281
           || ||||| | ||||||| |||||| | |||||| ||||||| || |||||||| || ||
Sbjct: 599 ggtcaagatatgcccaattgaaatgagacttaagagatgggagcgaaagaagtgtaaacc 540

                                                                       
Query: 282 aaacagtcttcctatgctgcacaagatgcatgttagggtcggcgacacagtgcaagtcat 341
           ||||||||||||| ||||||||||||||||||||||| |||| ||||| || || || ||
Sbjct: 539 aaacagtcttcctgtgctgcacaagatgcatgttaggatcggggacacggtacaggttat 480

                 
Query: 342 tgcagg 347
           ||||||
Sbjct: 479 tgcagg 474



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                             
Query: 382 ctttacaagcacaacagcactgtgatagtgaaggacctgaacttgaagtc 431
           |||| ||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 439 cttttcaagcacaacagcacggtgatcgtgaaggacctgaacttgaagtc 390
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>gb|M87839.1|TOBRPL24B Nicotiana tabacum (clone: L24-2) chloroplast ribosomal protein L24
           mRNA, complete cds
          Length = 736

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                       
Query: 249 gcttaagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagat 308
           ||||||||||||||| |||||  |||| ||||||||||| |||||  | || ||||| ||
Sbjct: 140 gcttaagcgatgggagcggaaagagtgtaagccaaacagccttccagtactacacaaaat 199

                   
Query: 309 gcatgtta 316
           ||||||||
Sbjct: 200 gcatgtta 207
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>gb|M87838.1|TOBL24RPA Nicotiana tabacum (clone: L24-1) chloroplast ribosomal protein L24
           mRNA, complete cds
          Length = 848

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                       
Query: 249 gcttaagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagat 308
           ||||||||||||||| |||||  |||| ||||||||||| |||||  | || ||||| ||
Sbjct: 140 gcttaagcgatgggagcggaaagagtgtaagccaaacagccttccagtactacacaaaat 199

                   
Query: 309 gcatgtta 316
           ||||||||
Sbjct: 200 gcatgtta 207
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>ref|NM_124841.2| Arabidopsis thaliana structural constituent of ribosome AT5G54600
           transcript variant AT5G54600.2 mRNA, complete cds
          Length = 772

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 253 aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
           ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 225 aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 284

             
Query: 313 gt 314
           ||
Sbjct: 285 gt 286
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>ref|NM_180859.1| Arabidopsis thaliana structural constituent of ribosome AT5G54600
           transcript variant AT5G54600.1 mRNA, complete cds
          Length = 829

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 253 aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
           ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 225 aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 284

             
Query: 313 gt 314
           ||
Sbjct: 285 gt 286
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>emb|AL845422.6| Zebrafish DNA sequence from clone DKEY-105A6 in linkage group 23
             Contains a novel gene and a CpG island, complete sequence
          Length = 221136

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 41    ctgcccccctgctttctctccg 62
             ||||||||||||||||||||||
Sbjct: 51830 ctgcccccctgctttctctccg 51809
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>gb|BT006573.1| Arabidopsis thaliana At5g54600 gene, complete cds
          Length = 597

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 253 aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
           ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 157 aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 216

             
Query: 313 gt 314
           ||
Sbjct: 217 gt 218
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>emb|BX833712.1|CNS0A1TQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL72ZC03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 748

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 253 aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
           ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 200 aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 259

             
Query: 313 gt 314
           ||
Sbjct: 260 gt 261
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>emb|BX832849.1|CNS0A1UM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL17ZF04 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 554

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 253 aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
           ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 6   aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 65

             
Query: 313 gt 314
           ||
Sbjct: 66  gt 67
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>gb|AY086810.1| Arabidopsis thaliana clone 27973 mRNA, complete sequence
          Length = 767

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 253 aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
           ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 225 aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 284

             
Query: 313 gt 314
           ||
Sbjct: 285 gt 286
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>dbj|AB016879.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRB17
          Length = 75744

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 253   aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
             ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 49800 aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 49859

               
Query: 313   gt 314
             ||
Sbjct: 49860 gt 49861
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>emb|Y09635.1|ATPLRIBPR A.thaliana mRNA for plastid ribosomal protein
          Length = 740

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 253 aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
           ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 186 aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 245

             
Query: 313 gt 314
           ||
Sbjct: 246 gt 247
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>gb|BT001990.1| Arabidopsis thaliana 50S ribosomal protein L24, chloroplast
           precursor (At5g54600) mRNA, complete cds
          Length = 797

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 253 aagcgatgggaacggaagaagtgcaagccaaacagtcttcctatgctgcacaagatgcat 312
           ||||| |||||||| ||  | ||||| |||||||||||||| || || ||||| ||||||
Sbjct: 194 aagcgttgggaacgaaaagaatgcaaaccaaacagtcttccgattctccacaaaatgcat 253

             
Query: 313 gt 314
           ||
Sbjct: 254 gt 255
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 84     ggcggcgacgatggccggcatg 105
              ||||||||||||||||||||||
Sbjct: 507260 ggcggcgacgatggccggcatg 507281
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>ref|NM_106488.2| Arabidopsis thaliana unknown protein AT1G78410 mRNA, complete cds
          Length = 660

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 287 aggaccggcggcgacgatggc 267
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>gb|AY821791.1| Arabidopsis thaliana tobacco rattle virus-induced protein variant 2
           (TRI) mRNA, complete cds; alternatively spliced
          Length = 315

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 141 aggaccggcggcgacgatggc 121
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>gb|AY821790.1| Arabidopsis thaliana tobacco rattle virus-induced protein variant 1
           (TRI) mRNA, complete cds; alternatively spliced
          Length = 327

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 141 aggaccggcggcgacgatggc 121
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>ref|NM_186473.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2208

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 290 ttcctatgctgcacaagatgc 310
           |||||||||||||||||||||
Sbjct: 259 ttcctatgctgcacaagatgc 239
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>gb|BT011927.1| Arabidopsis thaliana At1g78410 mRNA sequence
          Length = 324

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 138 aggaccggcggcgacgatggc 118
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>gb|AY102135.1| Arabidopsis thaliana At1g78410/F3F9_27 mRNA, complete cds
          Length = 327

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 141 aggaccggcggcgacgatggc 121
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>gb|AY070754.1| Arabidopsis thaliana At1g78410/F3F9_27 mRNA, complete cds
          Length = 653

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 279 aggaccggcggcgacgatggc 259
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 174      cccgctcgccgccaccttctcctccgcgc 202
                ||||||||||||| || ||||||||||||
Sbjct: 22203223 cccgctcgccgcctccctctcctccgcgc 22203195
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 290     ttcctatgctgcacaagatgc 310
               |||||||||||||||||||||
Sbjct: 3633716 ttcctatgctgcacaagatgc 3633696
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>emb|BX816295.1|CNS0ABXS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH3ZB09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1495

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 351 aggaccggcggcgacgatggc 331
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>emb|BX818135.1|CNS0ABAB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL62ZG02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 560

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 263 aggaccggcggcgacgatggc 243
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>gb|AF548364.1| Metapenaeus ensis vitellogenin mRNA, complete cds
          Length = 8012

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 116 agggcgccatgggggcgctctccgt 140
           |||||||||||||||| ||||||||
Sbjct: 40  agggcgccatgggggctctctccgt 16
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>gb|AF548363.1| Metapenaeus ensis vitellogenin gene, complete cds
          Length = 10389

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 116 agggcgccatgggggcgctctccgt 140
           |||||||||||||||| ||||||||
Sbjct: 40  agggcgccatgggggctctctccgt 16
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>gb|AY085552.1| Arabidopsis thaliana clone 157 mRNA, complete sequence
          Length = 570

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  aggaccggcggcgacgatggc 98
           |||||||||||||||||||||
Sbjct: 288 aggaccggcggcgacgatggc 268
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 108     ggcgctgcagggcgccatggg 128
               |||||||||||||||||||||
Sbjct: 4250345 ggcgctgcagggcgccatggg 4250325
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>gb|AC013430.5|AC013430 Genomic sequence for Arabidopsis thaliana BAC F3F9 from chromosome I,
             complete sequence
          Length = 95769

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 78    aggaccggcggcgacgatggc 98
             |||||||||||||||||||||
Sbjct: 23566 aggaccggcggcgacgatggc 23586
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>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1641_C04
          Length = 134367

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 290    ttcctatgctgcacaagatgc 310
              |||||||||||||||||||||
Sbjct: 103033 ttcctatgctgcacaagatgc 103013
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>dbj|AK108164.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H03, full
           insert sequence
          Length = 1082

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 290 ttcctatgctgcacaagatgc 310
           |||||||||||||||||||||
Sbjct: 590 ttcctatgctgcacaagatgc 570
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>dbj|AK101059.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022A10, full
           insert sequence
          Length = 4115

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 174 cccgctcgccgccaccttctcctccgcgc 202
           ||||||||||||| || ||||||||||||
Sbjct: 348 cccgctcgccgcctccctctcctccgcgc 376
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 174      cccgctcgccgccaccttctcctccgcgc 202
                ||||||||||||| || ||||||||||||
Sbjct: 22131568 cccgctcgccgcctccctctcctccgcgc 22131540
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>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155585

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 174   cccgctcgccgccaccttctcctccgcgc 202
             ||||||||||||| || ||||||||||||
Sbjct: 49787 cccgctcgccgcctccctctcctccgcgc 49815
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>gb|AC110244.10| Mus musculus chromosome 5, clone RP23-247E10, complete sequence
          Length = 214638

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 407    tagtgaaggacctgaacttg 426
              ||||||||||||||||||||
Sbjct: 194165 tagtgaaggacctgaacttg 194184
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>ref|XM_367978.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
            (MG07882.4) partial mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  gcgctgcagggcgccatggg 128
            ||||||||||||||||||||
Sbjct: 1306 gcgctgcagggcgccatggg 1325
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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete
              sequence
          Length = 3214944

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     agcttccttcgttatccgct 42
              ||||||||||||||||||||
Sbjct: 519402 agcttccttcgttatccgct 519383
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>emb|AJ508920.1|PFR508920 Propionibacterium freudenreichii subsp. shermanii adh1 gene for
           NADPH-dependent butanol dehydrogenase
          Length = 1131

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  gcggcgacgatggccggcat 104
           ||||||||||||||||||||
Sbjct: 679 gcggcgacgatggccggcat 698
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>gb|AC121975.3| Mus musculus BAC clone RP24-286J21 from chromosome 8, complete sequence
          Length = 174928

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tcgccgccaccttctcctcc 198
              ||||||||||||||||||||
Sbjct: 130252 tcgccgccaccttctcctcc 130233
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>ref|XM_645421.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (215.t00018)
           partial mRNA
          Length = 540

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 350 gtgaaaaaggtaaagttggggaag 373
           ||||||||||||||||||| ||||
Sbjct: 434 gtgaaaaaggtaaagttggagaag 457
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>ref|XM_651630.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (8.t00078)
           partial mRNA
          Length = 600

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 350 gtgaaaaaggtaaagttggggaag 373
           ||||||||||||||||||| ||||
Sbjct: 494 gtgaaaaaggtaaagttggagaag 517
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>gb|AC116772.6| Mus musculus chromosome 8, clone RP23-428C21, complete sequence
          Length = 232691

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tcgccgccaccttctcctcc 198
             ||||||||||||||||||||
Sbjct: 14543 tcgccgccaccttctcctcc 14524
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>gb|AC158588.3| Mus musculus chromosome 5, clone RP24-372I18, complete sequence
          Length = 179677

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 407   tagtgaaggacctgaacttg 426
             ||||||||||||||||||||
Sbjct: 56453 tagtgaaggacctgaacttg 56472
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>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      cggcgacgatggccggcatg 105
               ||||||||||||||||||||
Sbjct: 2323288 cggcgacgatggccggcatg 2323307
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>emb|AL935253.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 2/11
          Length = 324050

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 3      cctgtccgggaacgcagaggagcttcct 30
              ||||||||||||| ||||| ||||||||
Sbjct: 111638 cctgtccgggaactcagagtagcttcct 111611
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>gb|AE012185.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 93 of
            460 of the complete genome
          Length = 10953

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   tggccggcatggtggcgctg 114
            ||||||||||||||||||||
Sbjct: 6159 tggccggcatggtggcgctg 6178
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 95      tggccggcatggtggcgctgcagg 118
               |||||||||| |||||||||||||
Sbjct: 4295532 tggccggcatcgtggcgctgcagg 4295509



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 80      gaccggcggcgacgatggcc 99
               ||||||||||||||||||||
Sbjct: 2710091 gaccggcggcgacgatggcc 2710110
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>gb|AF493787.1| Oryza sativa phosphate transporter (Pht1-1) gene, complete cds
          Length = 5543

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  gcaacccgctcgccgccacc 189
            ||||||||||||||||||||
Sbjct: 2279 gcaacccgctcgccgccacc 2260
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>gb|AC084884.2| Oryza sativa chromosome 10 clone OSJNBa0031A07, complete sequence
          Length = 134553

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   ggggcaacccgctcgccgccacct 190
             ||||| ||||||||||||||||||
Sbjct: 82665 ggggccacccgctcgccgccacct 82642
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 80      gaccggcggcgacgatggcc 99
               ||||||||||||||||||||
Sbjct: 1358133 gaccggcggcgacgatggcc 1358152
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 95      tggccggcatggtggcgctg 114
               ||||||||||||||||||||
Sbjct: 4020615 tggccggcatggtggcgctg 4020596
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 167     ggggcaacccgctcgccgccacct 190
               ||||| ||||||||||||||||||
Sbjct: 2994243 ggggccacccgctcgccgccacct 2994220
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>dbj|AP004311.1| Synechocystis sp. PCC 6803 plasmid pSYSA DNA, complete genome
          Length = 103307

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   tggggtcagattcatggcca 226
             ||||||||||||||||||||
Sbjct: 74781 tggggtcagattcatggcca 74800
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      ggaccggcggcgacgatggc 98
               ||||||||||||||||||||
Sbjct: 1772522 ggaccggcggcgacgatggc 1772503
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 167     ggggcaacccgctcgccgccacct 190
               ||||| ||||||||||||||||||
Sbjct: 2994164 ggggccacccgctcgccgccacct 2994141


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,243,169
Number of Sequences: 3902068
Number of extensions: 3243169
Number of successful extensions: 61634
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60722
Number of HSP's gapped (non-prelim): 904
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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