ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet07b09 |
|---|---|
| Clone Library Name | barley_pub |
>CLCC_ARATH (Q96282) Chloride channel protein CLC-c (AtCLC-c)| Length = 779 Score = 123 bits (308), Expect = 3e-28 Identities = 57/106 (53%), Positives = 74/106 (69%) Frame = +2 Query: 119 RPLLHRSATNNISQVAMVGSKACPIESLDYEIIENDLFDQNWRTRAKADQVRYVVLKWTF 298 +PLL R+ N SQ+A+VG+ CPIESLDYEI END F Q+WR+R K + ++Y LKW Sbjct: 39 QPLLARNRKNTTSQIAIVGANTCPIESLDYEIFENDFFKQDWRSRKKIEILQYTFLKWAL 98 Query: 299 CFAIGVITGVVGFLINLAVENVAGFKHAAVSSLMESSSYWTAFWVF 436 F IG+ TG+VGFL NL VEN+AGFK + +LM Y+ AF+ F Sbjct: 99 AFLIGLATGLVGFLNNLGVENIAGFKLLLIGNLMLKEKYFQAFFAF 144
>CLCG_ARATH (P60300) Putative chloride channel-like protein CLC-g| Length = 763 Score = 117 bits (294), Expect = 1e-26 Identities = 59/117 (50%), Positives = 76/117 (64%) Frame = +2 Query: 86 TEDDEQRPPLTRPLLHRSATNNISQVAMVGSKACPIESLDYEIIENDLFDQNWRTRAKAD 265 T +D PL L R ATN+ SQVA+VG+ CPIESLDYEI END F Q+WR R+K + Sbjct: 5 TTEDSVAVPLLPSL--RRATNSTSQVAIVGANVCPIESLDYEIAENDFFKQDWRGRSKVE 62 Query: 266 QVRYVVLKWTFCFAIGVITGVVGFLINLAVENVAGFKHAAVSSLMESSSYWTAFWVF 436 +YV +KW CF IG+I ++GF NLAVEN+AG K S++M + + F VF Sbjct: 63 IFQYVFMKWLLCFCIGIIVSLIGFANNLAVENLAGVKFVVTSNMMIAGRFAMGFVVF 119
>CLCA_ARATH (P92941) Chloride channel protein CLC-a (AtCLC-a)| Length = 775 Score = 113 bits (282), Expect = 3e-25 Identities = 54/115 (46%), Positives = 75/115 (65%) Frame = +2 Query: 92 DDEQRPPLTRPLLHRSATNNISQVAMVGSKACPIESLDYEIIENDLFDQNWRTRAKADQV 271 +D + L +PLL R T + + +A+VG+K IESLDYEI ENDLF +WR+R+KA Sbjct: 21 EDPENNTLNQPLLKRHRTLSSTPLALVGAKVSHIESLDYEINENDLFKHDWRSRSKAQVF 80 Query: 272 RYVVLKWTFCFAIGVITGVVGFLINLAVENVAGFKHAAVSSLMESSSYWTAFWVF 436 +Y+ LKWT +G+ TG++ LINLAVEN+AG+K AV + +WT VF Sbjct: 81 QYIFLKWTLACLVGLFTGLIATLINLAVENIAGYKLLAVGYYIAQDRFWTGLMVF 135
>CLCB_ARATH (P92942) Chloride channel protein CLC-b (AtCLC-b)| Length = 780 Score = 104 bits (260), Expect = 1e-22 Identities = 52/113 (46%), Positives = 72/113 (63%) Frame = +2 Query: 95 DEQRPPLTRPLLHRSATNNISQVAMVGSKACPIESLDYEIIENDLFDQNWRTRAKADQVR 274 D + L +PL+ + T + + +A+VG+K IESLDYEI ENDLF +WR R+KA ++ Sbjct: 21 DPESNTLNQPLVKANRTLSSTPLALVGAKVSHIESLDYEINENDLFKHDWRKRSKAQVLQ 80 Query: 275 YVVLKWTFCFAIGVITGVVGFLINLAVENVAGFKHAAVSSLMESSSYWTAFWV 433 YV LKWT +G+ TG++ LINLAVEN+AG+K AV + Y T V Sbjct: 81 YVFLKWTLACLVGLFTGLIATLINLAVENIAGYKLLAVGHFLTQERYVTGLMV 133
>CLCD_ARATH (P92943) Chloride channel protein CLC-d (AtCLC-d)| Length = 792 Score = 62.8 bits (151), Expect = 4e-10 Identities = 33/82 (40%), Positives = 48/82 (58%) Frame = +2 Query: 191 IESLDYEIIENDLFDQNWRTRAKADQVRYVVLKWTFCFAIGVITGVVGFLINLAVENVAG 370 + SLDYE+IEN + + R K YV +KW F IG+ TG+ INL+VEN AG Sbjct: 44 VNSLDYEVIENYAYREEQAHRGKLYVGYYVAVKWFFSLLIGIGTGLAAVFINLSVENFAG 103 Query: 371 FKHAAVSSLMESSSYWTAFWVF 436 +K A ++++ SY+ F V+ Sbjct: 104 WKFALTFAIIQ-KSYFAGFIVY 124
>CLCN7_HUMAN (P51798) Chloride channel protein 7 (ClC-7)| Length = 805 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +2 Query: 194 ESLDYEIIENDLFDQNWRTRAKADQVRYVVLK-WTFCFAIGVITGVVGFLINLAVENVAG 370 ESLDY+ EN LF + R R R V +K W C IG++TG+V I++ VEN+AG Sbjct: 95 ESLDYDNSENQLFLEEER-RINHTAFRTVEIKRWVICALIGILTGLVACFIDIVVENLAG 153 Query: 371 FKHAAV 388 K+ + Sbjct: 154 LKYRVI 159
>CLCN7_RAT (P51799) Chloride channel protein 7 (ClC-7)| Length = 803 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +2 Query: 194 ESLDYEIIENDLFDQNWRTRAKADQVRYVVLK-WTFCFAIGVITGVVGFLINLAVENVAG 370 ESLDY+ EN LF + R R R V +K W C IG++TG+V I++ VEN+AG Sbjct: 93 ESLDYDNSENQLFLEEER-RINHTAFRTVEIKRWVICALIGILTGLVACFIDIVVENLAG 151 Query: 371 FKHAAV 388 K+ + Sbjct: 152 LKYRVI 157
>CLCN7_MOUSE (O70496) Chloride channel protein 7 (ClC-7)| Length = 803 Score = 50.4 bits (119), Expect = 2e-06 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +2 Query: 194 ESLDYEIIENDLFDQNWRTRAKADQVRYVVLK-WTFCFAIGVITGVVGFLINLAVENVAG 370 ESLDY+ EN LF + R R R V +K W C IG++TG+V I++ VEN+AG Sbjct: 93 ESLDYDNSENQLFLEEER-RINHTAFRTVEIKRWVICALIGILTGLVACFIDIVVENLAG 151 Query: 371 FKHAAV 388 K+ + Sbjct: 152 LKYRVI 157
>CLCN6_MOUSE (O35454) Chloride channel protein 6 (ClC-6)| Length = 870 Score = 46.6 bits (109), Expect = 3e-05 Identities = 26/73 (35%), Positives = 36/73 (49%) Frame = +2 Query: 194 ESLDYEIIENDLFDQNWRTRAKADQVRYVVLKWTFCFAIGVITGVVGFLINLAVENVAGF 373 ESLDY+ ND + + T RY +KW FAIGV TG+VG ++ +V Sbjct: 49 ESLDYDRCINDPYLEVLETMDNKKGRRYEAVKWMVVFAIGVCTGLVGLFVDFSVRLFTQL 108 Query: 374 KHAAVSSLMESSS 412 K V + +E S Sbjct: 109 KFGVVQTSVEECS 121
>CLCN6_RABIT (Q9TT16) Chloride channel protein 6 (ClC-6)| Length = 869 Score = 46.6 bits (109), Expect = 3e-05 Identities = 27/73 (36%), Positives = 37/73 (50%) Frame = +2 Query: 194 ESLDYEIIENDLFDQNWRTRAKADQVRYVVLKWTFCFAIGVITGVVGFLINLAVENVAGF 373 ESLDY+ ND + + T Y V+KWT FAIGV TG+VG ++ V+ Sbjct: 49 ESLDYDRCINDPYLEVLETMDHKKGRWYEVVKWTVVFAIGVCTGLVGLFVDFFVQLFTQL 108 Query: 374 KHAAVSSLMESSS 412 K V + +E S Sbjct: 109 KFGVVEASVEECS 121
>CLCN6_HUMAN (P51797) Chloride channel protein 6 (ClC-6)| Length = 869 Score = 45.4 bits (106), Expect = 7e-05 Identities = 26/73 (35%), Positives = 35/73 (47%) Frame = +2 Query: 194 ESLDYEIIENDLFDQNWRTRAKADQVRYVVLKWTFCFAIGVITGVVGFLINLAVENVAGF 373 ESLDY+ ND + + T RY +KW FAIGV TG+VG ++ V Sbjct: 49 ESLDYDRCINDPYLEVLETMDNKKGRRYEAVKWMVVFAIGVCTGLVGLFVDFFVRLFTQL 108 Query: 374 KHAAVSSLMESSS 412 K V + +E S Sbjct: 109 KFGVVQTSVEECS 121
>SYFB_MYCPA (Q740J0) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 828 Score = 29.6 bits (65), Expect = 4.1 Identities = 19/60 (31%), Positives = 30/60 (50%) Frame = -1 Query: 339 RKPTTPVMTPMAKQKVHLSTTYRTWSALALVLQFWSNRSFSMIS*SRLSMGQALEPTMAT 160 R+ TT V+ P+ + HL+TT ALV N S ++ S ++ Q ++PT T Sbjct: 541 RRGTTQVLNPLEADRPHLATTLLPALLEALV----RNVSRGLVDVSLYALAQVVQPTAET 596
>PGSG_RAT (P04917) Secretory granule proteoglycan core protein precursor| (Chondroitin sulfate proteoglycan core protein) (Proteoglycan 10K core protein) (PG19 core protein) (Cytolytic granule proteoglycan core protein) Length = 179 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 68 PREDLITEDDEQRPPLTRPLLHRSATNNISQVA 166 PR DLI E+ PP+T P+L R N+ ++ Sbjct: 54 PRFDLIAEESNVGPPMTDPVLMRGFPNDFFPIS 86
>ADA2A_HUMAN (P08913) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) (Alpha-2 adrenergic receptor subtype C10) Length = 450 Score = 28.9 bits (63), Expect = 7.1 Identities = 15/45 (33%), Positives = 18/45 (40%) Frame = +1 Query: 157 PGGHGRLQGLPHREPRLRDHRERPVRPELEDEGQGGPGAVRGAQM 291 P G L E DH ERP P + G G G R +Q+ Sbjct: 282 PAGPRDTDALDLEESSSSDHAERPPGPRRPERGPRGKGKARASQV 326
>YAP2_YEAST (P24813) AP-1-like transcription activator YAP2 (Transcription| factor CAD1) (Cadmium resistance protein 1) Length = 409 Score = 28.9 bits (63), Expect = 7.1 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 86 TEDDEQRPPLTRPLLHRSATNNISQVAMVGSKACPIESLDYEIIENDLFDQ 238 TEDD P + PL S NNI +G+K C + + ++I + L +Q Sbjct: 269 TEDDTLFPSVL-PLAVGSQCNNICNRKCIGTKPCSNKEIKCDLITSHLLNQ 318
>IF2H_MOUSE (Q9Z0N2) Eukaryotic translation initiation factor 2 subunit 3,| Y-linked (Eukaryotic translation initiation factor 2 gamma subunit, Y-linked) (eIF-2-gamma Y) Length = 471 Score = 28.5 bits (62), Expect = 9.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +2 Query: 71 REDLITEDDEQRPPLTRPLLHRSATNNISQVAMV 172 R+DL T D + PL+R ++ R AT NI + V Sbjct: 16 RQDLATLDVTKLTPLSREIISRQATINIGTIGHV 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.144 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,761,398 Number of Sequences: 219361 Number of extensions: 584641 Number of successful extensions: 1920 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1877 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1917 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3130907202 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
