ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet07b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY839295.1| Hordeum vulgare thaumatin-like protein TLP5 mRNA, complete cds Length = 918 Score = 535 bits (270), Expect = e-149 Identities = 282/286 (98%) Strand = Plus / Plus Query: 1 cgatatggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggc 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 147 cgatatggccaggcgcgctcccaggcggcggcgcgcgtctcgatccgggccagtcgtggc 206 Query: 61 agctcaacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcacct 120 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 agctcaatatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcacct 266 Query: 121 tcgaccgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 tcgaccgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgcc 326 Query: 181 gcgtgtccggcgagcagccagccacgctggccgagtacacgctcggccagggcgggaacc 240 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 327 gcgtgtccggcgagcagccagccacgctggccgagtacacgctggggcagggcgggaacc 386 Query: 241 gggactttttcgacctgtccgtcatagacgggttcaatgtgcccat 286 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 gggactttttcgacctgtccgtcatagacgggttcaatgtgcccat 432
>gb|AF442967.1| Triticum aestivum clone WAS-3a thaumatin-like protein mRNA, complete cds Length = 925 Score = 327 bits (165), Expect = 1e-86 Identities = 252/281 (89%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| ||| Sbjct: 172 tggccgggcgcgctcccaggcggcggcgtgcgtctcgacccgggccagtcttgggcgctg 231 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 232 aacatgcccgccggcaccgcgggcgccagggtgtggccgcgcaccgggtgcaccttcgac 291 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 |||||||||| |||||||||||||| |||||||||| ||| | |||| |||| | ||| Sbjct: 292 ggcagcggccggggccggtgcatcacgggcgactgcggcggcacgctggcctgcagggtg 351 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggccagggcgggaaccgggac 245 |||||| ||||||| ||||||||||||||||||| || ||||||||||||||| |||| Sbjct: 352 tccggccagcagcccaccacgctggccgagtacaccctgggccagggcgggaacaaggac 411 Query: 246 tttttcgacctgtccgtcatagacgggttcaatgtgcccat 286 || ||||||||||||||||| ||||||||||| |||||||| Sbjct: 412 ttcttcgacctgtccgtcatcgacgggttcaacgtgcccat 452
>gb|AF355457.1|AF355457 Hordeum vulgare thaumatin-like protein TLP7 mRNA, complete cds Length = 967 Score = 303 bits (153), Expect = 2e-79 Identities = 249/281 (88%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||| || Sbjct: 167 tggccgggcgcgctcccaggtggcggcgtgcgtctcgacccaggccagtcgtgggctctg 226 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 aacatgccggccggcaccgcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 286 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 |||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||| Sbjct: 287 ggcagcggccgtggccggtgcatcaccggagactgcggcggcgcgctggcatgccgcgtg 346 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggccagggcgggaaccgggac 245 |||||| ||||||| ||||| ||||||||||||| || || ||||||| |||| |||| Sbjct: 347 tccggccagcagcccaccacgttggccgagtacaccctgggacagggcgcgaacaaggac 406 Query: 246 tttttcgacctgtccgtcatagacgggttcaatgtgcccat 286 || ||||||||||||||||| ||||||||||| || ||||| Sbjct: 407 ttcttcgacctgtccgtcatcgacgggttcaacgttcccat 447
>gb|AF016327.1|AF016327 Hordeum vulgare Barperm1 (perm1) mRNA, partial cds Length = 616 Score = 303 bits (153), Expect = 2e-79 Identities = 249/281 (88%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| |||||||||||||| ||||||| |||||||||||| |||||||||||| || Sbjct: 46 tggccgggcgcgctcccaggtggcggcgtgcgtctcgacccaggccagtcgtgggctctg 105 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 106 aacatgccggccggcaccgcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 165 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 |||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||| Sbjct: 166 ggcagcggccgtggccggtgcatcaccggagactgcggcggcgcgctggcatgccgcgtg 225 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggccagggcgggaaccgggac 245 |||||| ||||||| ||||| ||||||||||||| || || ||||||| |||| |||| Sbjct: 226 tccggccagcagcccaccacgttggccgagtacaccctgggacagggcgcgaacaaggac 285 Query: 246 tttttcgacctgtccgtcatagacgggttcaatgtgcccat 286 || ||||||||||||||||| ||||||||||| || ||||| Sbjct: 286 ttcttcgacctgtccgtcatcgacgggttcaacgttcccat 326
>gb|AF355456.1|AF355456 Hordeum vulgare thaumatin-like protein TLP6 mRNA, complete cds Length = 921 Score = 289 bits (146), Expect = 2e-75 Identities = 245/278 (88%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| ||||||||||| || ||||| | |||||||||||| |||||||||||| ||| Sbjct: 200 tggccgggcgcgctcccgggtggcggtgtgcgtctcgacccaggccagtcgtgggcgctg 259 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 260 aacatgcccgcgggcaccgcgggcgccagggtgtggccgcgcaccgggtgcaccttcgac 319 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 |||||||||| |||||||||||||| ||||||||| |||| |||| ||||| ||| Sbjct: 320 ggcagcggccgcggccggtgcatcacgggcgactgcaacggcgtgctggcatgccgggtg 379 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggccagggcgggaaccgggac 245 |||||| ||||||| ||||||||||||||||||| || |||||||||| |||| |||| Sbjct: 380 tccggccagcagccgaccacgctggccgagtacaccctgggccagggcgcgaacaaggac 439 Query: 246 tttttcgacctgtccgtcatagacgggttcaatgtgcc 283 || ||||||||||||||||| ||||||||||| ||||| Sbjct: 440 ttcttcgacctgtccgtcatcgacgggttcaacgtgcc 477
>emb|AJ001268.1|HVPATHPR5 Hordeum vulgare mRNA for basic pathogenesis-related protein, PR5 Length = 867 Score = 281 bits (142), Expect = 6e-73 Identities = 244/278 (87%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| ||||||||||| || ||||| | |||||||||||| |||||||||||| ||| Sbjct: 130 tggccgggcgcgctcccgggtggcggtgtgcgtctcgacccaggccagtcgtgggcgctg 189 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 190 aacatgcccgcgggtaccgcgggcgccagggtgtggccgcgcaccgggtgcaccttcgac 249 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 |||||||||| |||||||||||||||||||||||| || | |||| ||||| ||| Sbjct: 250 ggcagcggccgcggccggtgcatcaccggcgactgcaacggtgtgctggcatgccgggtg 309 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggccagggcgggaaccgggac 245 |||||| ||||||| ||||||||||||||||||| || |||||||||| |||| |||| Sbjct: 310 tccggccagcagccgaccacgctggccgagtacaccctgggccagggcgcgaacaaggac 369 Query: 246 tttttcgacctgtccgtcatagacgggttcaatgtgcc 283 || ||||||||||||||||| ||||||||||| ||||| Sbjct: 370 ttcttcgacctgtccgtcatcgacgggttcaacgtgcc 407
>gb|U57787.1|ASU57787 Avena sativa permatin precursor mRNA, complete cds Length = 846 Score = 248 bits (125), Expect = 8e-63 Identities = 242/281 (86%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| ||||||||||| |||||||||| ||| || ||||||||| |||||||| |||| Sbjct: 143 tggccgggcgcgctcccgggcggcggcgtgcggctggacccgggcaagtcgtgggcgctc 202 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct: 203 aacatgccggcggggacccggggcgccagggtgtggccgcgcacggggtgcaccttcgac 262 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 ||||||||| || | ||| |||| |||||||||| ||||| |||| |||||||||| Sbjct: 263 gccagcggccgggggcactgcgtcacgggcgactgcggcggcgcgctggcctgccgcgtg 322 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggccagggcgggaaccgggac 245 ||||| ||||||| || |||||||| ||||||||||||||| |||||||| | |||| Sbjct: 323 tccgggcagcagccggcgacgctggcggagtacacgctcggcaagggcggggccaaggac 382 Query: 246 tttttcgacctgtccgtcatagacgggttcaatgtgcccat 286 || |||||||| |||||||| ||||||||||| |||||||| Sbjct: 383 ttcttcgacctctccgtcatcgacgggttcaacgtgcccat 423
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09, complete sequence Length = 159600 Score = 133 bits (67), Expect = 3e-28 Identities = 184/223 (82%) Strand = Plus / Minus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||| | || Sbjct: 139433 tggccgggcgcgctcccgggcggcggcgcccggctcgacccggggcagtcgtggtcgatc 139374 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 | | | |||| ||||| ||| ||||||| | ||||||||||| || ||| |||||||| Sbjct: 139373 agcgtcgccgccggcacaccggccgccaggatctggccgcgcaccggctgctccttcgac 139314 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 || |||||| ||||| ||| ||| ||||||||||| ||||| ||| |||| ||| Sbjct: 139313 ggcgccggccgcggccgctgcgccacgggcgactgcgccggcgcgctgtcctgcgccgtc 139254 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggcc 228 |||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 139253 tccggcgagccgcccaccacgctggccgagtacacgctcggcc 139211 Score = 75.8 bits (38), Expect = 7e-11 Identities = 176/222 (79%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| |||||||| || |||||||||| ||| |||||||| ||| |||||||| |||| Sbjct: 119157 tggccgggcgcgctgcccggcggcggcgtgcggctcgacccaggcaagtcgtggacgctc 119216 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 ||| | |||| ||||| || ||||||| | ||||| ||||| || ||| ||||||| Sbjct: 119217 aacgtcgccgccggcaccaaggccgccaggatctggccccgcaccggctgcgacttcgac 119276 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 || |||||| ||||| ||| |||||||||||||| ||| || |||| ||| Sbjct: 119277 ggcgccggccgcggccgctgcctcaccggcgactgccgcaacgcgctctcctgcgccgtc 119336 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggc 227 ||||||| || ||| |||||||||||||||||||||||||| Sbjct: 119337 tccggcgcgccgccgaccacgctggccgagtacacgctcggc 119378 Score = 46.1 bits (23), Expect = 0.061 Identities = 59/71 (83%) Strand = Plus / Minus Query: 92 cagggtgtggccgcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcac 151 |||||||||| |||||||| |||| ||||||| || |||||||||| | ||| ||| Sbjct: 91609 cagggtgtggggccgcacgggctgcagcttcgacggctccggccgtggcagctgcgccac 91550 Query: 152 cggcgactgcg 162 ||||||||||| Sbjct: 91549 cggcgactgcg 91539 Score = 44.1 bits (22), Expect = 0.24 Identities = 64/78 (82%) Strand = Plus / Minus Query: 92 cagggtgtggccgcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcac 151 |||||||||| |||||||| |||| ||||||| || |||||| ||| | ||| ||| Sbjct: 72111 cagggtgtggggccgcacgggctgcagcttcgacggctccggccgcggcagctgcgccac 72052 Query: 152 cggcgactgcgcgggcgc 169 |||||||||||| ||||| Sbjct: 72051 cggcgactgcgccggcgc 72034 Score = 40.1 bits (20), Expect = 3.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 111 gggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcg 162 ||||||| ||||||| || |||||| ||| ||||| |||||||||||||| Sbjct: 115135 gggtgcagcttcgacggcgccggccgcggcaggtgcgccaccggcgactgcg 115084
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 133 bits (67), Expect = 3e-28 Identities = 184/223 (82%) Strand = Plus / Minus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||| | || Sbjct: 27017047 tggccgggcgcgctcccgggcggcggcgcccggctcgacccggggcagtcgtggtcgatc 27016988 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 | | | |||| ||||| ||| ||||||| | ||||||||||| || ||| |||||||| Sbjct: 27016987 agcgtcgccgccggcacaccggccgccaggatctggccgcgcaccggctgctccttcgac 27016928 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 || |||||| ||||| ||| ||| ||||||||||| ||||| ||| |||| ||| Sbjct: 27016927 ggcgccggccgcggccgctgcgccacgggcgactgcgccggcgcgctgtcctgcgccgtc 27016868 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggcc 228 |||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 27016867 tccggcgagccgcccaccacgctggccgagtacacgctcggcc 27016825 Score = 75.8 bits (38), Expect = 7e-11 Identities = 176/222 (79%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| |||||||| || |||||||||| ||| |||||||| ||| |||||||| |||| Sbjct: 26995963 tggccgggcgcgctgcccggcggcggcgtgcggctcgacccaggcaagtcgtggacgctc 26996022 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 ||| | |||| ||||| || ||||||| | ||||| ||||| || ||| ||||||| Sbjct: 26996023 aacgtcgccgccggcaccaaggccgccaggatctggccccgcaccggctgcgacttcgac 26996082 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 || |||||| ||||| ||| |||||||||||||| ||| || |||| ||| Sbjct: 26996083 ggcgccggccgcggccgctgcctcaccggcgactgccgcaacgcgctctcctgcgccgtc 26996142 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggc 227 ||||||| || ||| |||||||||||||||||||||||||| Sbjct: 26996143 tccggcgcgccgccgaccacgctggccgagtacacgctcggc 26996184 Score = 46.1 bits (23), Expect = 0.061 Identities = 59/71 (83%) Strand = Plus / Minus Query: 92 cagggtgtggccgcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcac 151 |||||||||| |||||||| |||| ||||||| || |||||||||| | ||| ||| Sbjct: 26968165 cagggtgtggggccgcacgggctgcagcttcgacggctccggccgtggcagctgcgccac 26968106 Query: 152 cggcgactgcg 162 ||||||||||| Sbjct: 26968105 cggcgactgcg 26968095 Score = 44.1 bits (22), Expect = 0.24 Identities = 64/78 (82%) Strand = Plus / Minus Query: 92 cagggtgtggccgcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcac 151 |||||||||| |||||||| |||| ||||||| || |||||| ||| | ||| ||| Sbjct: 26947144 cagggtgtggggccgcacgggctgcagcttcgacggctccggccgcggcagctgcgccac 26947085 Query: 152 cggcgactgcgcgggcgc 169 |||||||||||| ||||| Sbjct: 26947084 cggcgactgcgccggcgc 26947067 Score = 40.1 bits (20), Expect = 3.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 111 gggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcg 162 ||||||| ||||||| || |||||| ||| ||||| |||||||||||||| Sbjct: 26991941 gggtgcagcttcgacggcgccggccgcggcaggtgcgccaccggcgactgcg 26991890
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 133 bits (67), Expect = 3e-28 Identities = 184/223 (82%) Strand = Plus / Minus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| ||||||||||| ||||||||||| || ||||||||||| ||||||||| | || Sbjct: 26942636 tggccgggcgcgctcccgggcggcggcgcccggctcgacccggggcagtcgtggtcgatc 26942577 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 | | | |||| ||||| ||| ||||||| | ||||||||||| || ||| |||||||| Sbjct: 26942576 agcgtcgccgccggcacaccggccgccaggatctggccgcgcaccggctgctccttcgac 26942517 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 || |||||| ||||| ||| ||| ||||||||||| ||||| ||| |||| ||| Sbjct: 26942516 ggcgccggccgcggccgctgcgccacgggcgactgcgccggcgcgctgtcctgcgccgtc 26942457 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggcc 228 |||||||||| ||| ||||||||||||||||||||||||||| Sbjct: 26942456 tccggcgagccgcccaccacgctggccgagtacacgctcggcc 26942414 Score = 75.8 bits (38), Expect = 7e-11 Identities = 176/222 (79%) Strand = Plus / Plus Query: 6 tggccaggcgcgctcccaggcggcggcgcgcgtctcgacccgggccagtcgtggcagctc 65 ||||| |||||||| || |||||||||| ||| |||||||| ||| |||||||| |||| Sbjct: 26922360 tggccgggcgcgctgcccggcggcggcgtgcggctcgacccaggcaagtcgtggacgctc 26922419 Query: 66 aacatgcccgcgggcacggcgggcgccagggtgtggccgcgcacggggtgcaccttcgac 125 ||| | |||| ||||| || ||||||| | ||||| ||||| || ||| ||||||| Sbjct: 26922420 aacgtcgccgccggcaccaaggccgccaggatctggccccgcaccggctgcgacttcgac 26922479 Query: 126 cgcagcggccgtggccggtgcatcaccggcgactgcgcgggcgctctggtctgccgcgtg 185 || |||||| ||||| ||| |||||||||||||| ||| || |||| ||| Sbjct: 26922480 ggcgccggccgcggccgctgcctcaccggcgactgccgcaacgcgctctcctgcgccgtc 26922539 Query: 186 tccggcgagcagccagccacgctggccgagtacacgctcggc 227 ||||||| || ||| |||||||||||||||||||||||||| Sbjct: 26922540 tccggcgcgccgccgaccacgctggccgagtacacgctcggc 26922581 Score = 46.1 bits (23), Expect = 0.061 Identities = 59/71 (83%) Strand = Plus / Minus Query: 92 cagggtgtggccgcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcac 151 |||||||||| |||||||| |||| ||||||| || |||||||||| | ||| ||| Sbjct: 26894812 cagggtgtggggccgcacgggctgcagcttcgacggctccggccgtggcagctgcgccac 26894753 Query: 152 cggcgactgcg 162 ||||||||||| Sbjct: 26894752 cggcgactgcg 26894742 Score = 44.1 bits (22), Expect = 0.24 Identities = 64/78 (82%) Strand = Plus / Minus Query: 92 cagggtgtggccgcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcac 151 |||||||||| |||||||| |||| ||||||| || |||||| ||| | ||| ||| Sbjct: 26875314 cagggtgtggggccgcacgggctgcagcttcgacggctccggccgcggcagctgcgccac 26875255 Query: 152 cggcgactgcgcgggcgc 169 |||||||||||| ||||| Sbjct: 26875254 cggcgactgcgccggcgc 26875237 Score = 40.1 bits (20), Expect = 3.7 Identities = 44/52 (84%) Strand = Plus / Minus Query: 111 gggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcg 162 ||||||| ||||||| || |||||| ||| ||||| |||||||||||||| Sbjct: 26918338 gggtgcagcttcgacggcgccggccgcggcaggtgcgccaccggcgactgcg 26918287
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 4e-06 Identities = 96/118 (81%) Strand = Plus / Minus Query: 104 gcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcgc 163 ||||||||| || |||||||| |||||||||| ||||| ||| |||| ||||||||||| Sbjct: 6616974 gcgcacgggcggctccttcgacggcagcggccgcggccgctgcgtcacgggcgactgcgc 6616915 Query: 164 gggcgctctggtctgccgcgtgtccggcgagcagccagccacgctggccgagtacacg 221 ||| ||| |||| || |||||||||| ||| |||||||| ||||||||||| Sbjct: 6616914 cagcgtgctgtcctgctccgcctccggcgagccgcccaccacgctgcccgagtacacg 6616857 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 96 gtgtggccgcgcacggggtgcaccttcgac 125 |||||| |||||||||| |||||||||||| Sbjct: 728208 gtgtgggcgcgcacgggctgcaccttcgac 728237
>dbj|AP002094.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483F08 Length = 148985 Score = 60.0 bits (30), Expect = 4e-06 Identities = 96/118 (81%) Strand = Plus / Minus Query: 104 gcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcgc 163 ||||||||| || |||||||| |||||||||| ||||| ||| |||| ||||||||||| Sbjct: 97145 gcgcacgggcggctccttcgacggcagcggccgcggccgctgcgtcacgggcgactgcgc 97086 Query: 164 gggcgctctggtctgccgcgtgtccggcgagcagccagccacgctggccgagtacacg 221 ||| ||| |||| || |||||||||| ||| |||||||| ||||||||||| Sbjct: 97085 cagcgtgctgtcctgctccgcctccggcgagccgcccaccacgctgcccgagtacacg 97028
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 6e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 144 tgcatcaccggcgactgcgcgggcgctctggtctgccgcgtgtccggcgagcagccagcc 203 ||||||| ||| ||||||| ||||| ||| |||| ||| |||||||||| ||| ||| Sbjct: 10798461 tgcatcatgggcaactgcgccggcgcgctgtcctgctccgtctccggcgagccgcccgcc 10798520 Query: 204 acgctggccgagtacacgctcggc 227 |||||| | ||||||||||||||| Sbjct: 10798521 acgctgacagagtacacgctcggc 10798544 Score = 56.0 bits (28), Expect = 6e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 104 gcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcgc 163 ||||||||| || |||||||| |||||||||| ||||| ||| |||| ||||||||||| Sbjct: 6945282 gcgcacgggcggctccttcgacggcagcggccgcggccgctgcgtcacgggcgactgcgc 6945341
>dbj|AP003522.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036B02 Length = 168253 Score = 56.0 bits (28), Expect = 6e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 144 tgcatcaccggcgactgcgcgggcgctctggtctgccgcgtgtccggcgagcagccagcc 203 ||||||| ||| ||||||| ||||| ||| |||| ||| |||||||||| ||| ||| Sbjct: 151524 tgcatcatgggcaactgcgccggcgcgctgtcctgctccgtctccggcgagccgcccgcc 151583 Query: 204 acgctggccgagtacacgctcggc 227 |||||| | ||||||||||||||| Sbjct: 151584 acgctgacagagtacacgctcggc 151607
>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0055N24 Length = 142702 Score = 56.0 bits (28), Expect = 6e-05 Identities = 70/84 (83%) Strand = Plus / Plus Query: 144 tgcatcaccggcgactgcgcgggcgctctggtctgccgcgtgtccggcgagcagccagcc 203 ||||||| ||| ||||||| ||||| ||| |||| ||| |||||||||| ||| ||| Sbjct: 24827 tgcatcatgggcaactgcgccggcgcgctgtcctgctccgtctccggcgagccgcccgcc 24886 Query: 204 acgctggccgagtacacgctcggc 227 |||||| | ||||||||||||||| Sbjct: 24887 acgctgacagagtacacgctcggc 24910
>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0479H10 Length = 139874 Score = 56.0 bits (28), Expect = 6e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 104 gcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcgc 163 ||||||||| || |||||||| |||||||||| ||||| ||| |||| ||||||||||| Sbjct: 134807 gcgcacgggcggctccttcgacggcagcggccgcggccgctgcgtcacgggcgactgcgc 134866
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0061B07 Length = 124766 Score = 56.0 bits (28), Expect = 6e-05 Identities = 52/60 (86%) Strand = Plus / Plus Query: 104 gcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcgc 163 ||||||||| || |||||||| |||||||||| ||||| ||| |||| ||||||||||| Sbjct: 4709 gcgcacgggcggctccttcgacggcagcggccgcggccgctgcgtcacgggcgactgcgc 4768
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 46.1 bits (23), Expect = 0.061 Identities = 23/23 (100%) Strand = Plus / Minus Query: 12 ggcgcgctcccaggcggcggcgc 34 ||||||||||||||||||||||| Sbjct: 3115448 ggcgcgctcccaggcggcggcgc 3115426
>ref|XM_549890.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1959 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 96 gtgtggccgcgcacggggtgcaccttcgac 125 |||||| |||||||||| |||||||||||| Sbjct: 241 gtgtgggcgcgcacgggctgcaccttcgac 270
>emb|X68197.1|OSTHLP O.sativa mRNA for thaumatin-like protein Length = 681 Score = 44.1 bits (22), Expect = 0.24 Identities = 64/78 (82%) Strand = Plus / Plus Query: 92 cagggtgtggccgcgcacggggtgcaccttcgaccgcagcggccgtggccggtgcatcac 151 |||||||||| |||||||| |||| ||||||| || |||||| ||| | ||| ||| Sbjct: 235 cagggtgtggggccgcacgggctgcagcttcgacggctccggccgcggcagctgcgccac 294 Query: 152 cggcgactgcgcgggcgc 169 |||||||||||| ||||| Sbjct: 295 cggcgactgcgccggcgc 312
>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1212_B09 Length = 130728 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 96 gtgtggccgcgcacggggtgcaccttcgac 125 |||||| |||||||||| |||||||||||| Sbjct: 5408 gtgtgggcgcgcacgggctgcaccttcgac 5437
>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032H19 Length = 126434 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Plus Query: 96 gtgtggccgcgcacggggtgcaccttcgac 125 |||||| |||||||||| |||||||||||| Sbjct: 111952 gtgtgggcgcgcacgggctgcaccttcgac 111981
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 115 gcaccttcgaccgcagcggccg 136 |||||||||||||||||||||| Sbjct: 1073034 gcaccttcgaccgcagcggccg 1073055
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 ggcggcggcgcgcgtctcgac 44 ||||||||||||||||||||| Sbjct: 2254101 ggcggcggcgcgcgtctcgac 2254121
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 gcgctcccaggcggcggcgcg 35 ||||||||||||||||||||| Sbjct: 27296214 gcgctcccaggcggcggcgcg 27296234
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 gcgctcccaggcggcggcgcg 35 ||||||||||||||||||||| Sbjct: 6578653 gcgctcccaggcggcggcgcg 6578633
>dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1151D08 Length = 152824 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 15 gcgctcccaggcggcggcgcg 35 ||||||||||||||||||||| Sbjct: 77323 gcgctcccaggcggcggcgcg 77303
>gb|AY112407.1| Zea mays CL3918_1 mRNA sequence Length = 724 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 acgctggccgagtacacgctc 224 ||||||||||||||||||||| Sbjct: 87 acgctggccgagtacacgctc 107
>ref|XM_471730.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1302 Score = 40.1 bits (20), Expect = 3.7 Identities = 32/36 (88%) Strand = Plus / Plus Query: 186 tccggcgagcagccagccacgctggccgagtacacg 221 |||||||||| ||| |||||||| ||||||||||| Sbjct: 184 tccggcgagctgcccaccacgctgcccgagtacacg 219
>gb|AY589699.1| Mirabilis jalapa clone FS-87 thaumatin-like protein mRNA, partial cds Length = 496 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gacgggttcaatgtgcccat 286 |||||||||||||||||||| Sbjct: 313 gacgggttcaatgtgcccat 332
>emb|AL512604.14| Human DNA sequence from clone RP11-220I1 on chromosome 9 Contains two novel genes, the 5' end of a novel gene (FLJ22611), an RPL21 psueodgene and two CpG islands, complete sequence Length = 176503 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 agcagccagccacgctggcc 212 |||||||||||||||||||| Sbjct: 44123 agcagccagccacgctggcc 44142
>emb|AJ574850.2|HVU574850 Hordeum vulgare bcat-1 gene for branched-chain amino acid aminotransferase, exons 1-7 Length = 4318 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 tctgccgcgtgtccggcgag 194 |||||||||||||||||||| Sbjct: 1436 tctgccgcgtgtccggcgag 1417
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 gccagggtgtggccgcgcac 109 |||||||||||||||||||| Sbjct: 211572 gccagggtgtggccgcgcac 211591
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 ccagggtgtggccgcgcacg 110 |||||||||||||||||||| Sbjct: 123892 ccagggtgtggccgcgcacg 123911
>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03, complete sequence Length = 175555 Score = 40.1 bits (20), Expect = 3.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 186 tccggcgagcagccagccacgctggccgagtacacg 221 |||||||||| ||| |||||||| ||||||||||| Sbjct: 63295 tccggcgagctgcccaccacgctgcccgagtacacg 63260
>dbj|AB239930.1| Lolium perenne PR5 mRNA for thaumatin-like protein, partial cds Length = 305 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tccgtcatagacgggttcaa 277 |||||||||||||||||||| Sbjct: 255 tccgtcatagacgggttcaa 274
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 cgcgcgtctcgacccgggcc 51 |||||||||||||||||||| Sbjct: 2756908 cgcgcgtctcgacccgggcc 2756927
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 ggcggcggcgcgcgtctcga 43 |||||||||||||||||||| Sbjct: 1572799 ggcggcggcgcgcgtctcga 1572780
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.7 Identities = 32/36 (88%) Strand = Plus / Minus Query: 186 tccggcgagcagccagccacgctggccgagtacacg 221 |||||||||| ||| |||||||| ||||||||||| Sbjct: 13849636 tccggcgagctgcccaccacgctgcccgagtacacg 13849601
>ref|XM_575873.1| PREDICTED: Rattus norvegicus forkhead box D3 (Foxd3), mRNA Length = 1737 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ccgcgggcacggcgggcgcc 92 |||||||||||||||||||| Sbjct: 1518 ccgcgggcacggcgggcgcc 1537
>gb|AF262873.1| Pleurothallis condylata isolate MWC6808 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, partial sequence Length = 762 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tgcccgcgggcacggcgggc 89 |||||||||||||||||||| Sbjct: 571 tgcccgcgggcacggcgggc 590
>dbj|AB110643.1| Streptomyces thermoviolaceus stxIV, stxI genes for alpha-L-arabinofuranosidase, xylanase I complete cds Length = 3642 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gccagggtgtggccgcgcac 109 |||||||||||||||||||| Sbjct: 2572 gccagggtgtggccgcgcac 2553
>dbj|AK069182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009L15, full insert sequence Length = 693 Score = 40.1 bits (20), Expect = 3.7 Identities = 44/52 (84%) Strand = Plus / Plus Query: 111 gggtgcaccttcgaccgcagcggccgtggccggtgcatcaccggcgactgcg 162 ||||||| ||||||| || |||||| ||| ||||| |||||||||||||| Sbjct: 284 gggtgcagcttcgacggcgccggccgcggcaggtgcgccaccggcgactgcg 335
>gb|AF194024.1|AF194024 Streptomyces thermocyaneoviolaceus xylanase A precursor (xynA) gene, complete cds Length = 1918 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gccagggtgtggccgcgcac 109 |||||||||||||||||||| Sbjct: 848 gccagggtgtggccgcgcac 829
>gb|M64551.1|STMXLNA Streptomyces lividans alpha-L-arabinofuranosidase precursor (abfB) and xylanase A precursor (xlnA) genes, complete cds Length = 4501 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 gccagggtgtggccgcgcac 109 |||||||||||||||||||| Sbjct: 2683 gccagggtgtggccgcgcac 2664 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,487,094 Number of Sequences: 3902068 Number of extensions: 1487094 Number of successful extensions: 33190 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32376 Number of HSP's gapped (non-prelim): 810 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
