| Clone Name | baet07b04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK073732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060I15, full insert sequence Length = 925 Score = 186 bits (94), Expect = 4e-44 Identities = 157/178 (88%) Strand = Plus / Plus Query: 281 agggagatgagccgcgggaggtctccggagccgcttgatttcttcatatggactgtcgag 340 |||||||||||||| ||| |||| ||||||||||| ||||||||||| ||||| |||||| Sbjct: 235 agggagatgagccgggggcggtcgccggagccgctggatttcttcatctggacagtcgag 294 Query: 341 gacgtcggcttgtggcttgaagagataaatcttggtggctacagacaagtttttgaagaa 400 || || || || ||||||||||||||||| ||||| ||||||| ||||||||||| ||| Sbjct: 295 gatgttgggttatggcttgaagagataaaccttggcagctacaggcaagtttttgaggaa 354 Query: 401 aacagtgtcaatggagagtatctagagagcttgtcgatgtttactaccgagcagattc 458 ||| ||||||||||||||||||| || ||| |||||||||||||||| || ||||||| Sbjct: 355 aacggtgtcaatggagagtatcttgaaagcctgtcgatgtttactacagaacagattc 412
>gb|AY105110.1| Zea mays PCO079612 mRNA sequence Length = 1023 Score = 176 bits (89), Expect = 4e-41 Identities = 158/181 (87%) Strand = Plus / Plus Query: 278 aggagggagatgagccgcgggaggtctccggagccgcttgatttcttcatatggactgtc 337 |||| ||||||| |||| ||| |||| ||||| ||||| ||||||||||||||||||||| Sbjct: 318 aggaaggagatgggccgtgggcggtcgccggaaccgctcgatttcttcatatggactgtc 377 Query: 338 gaggacgtcggcttgtggcttgaagagataaatcttggtggctacagacaagtttttgaa 397 ||||| || || || ||||| ||||| || || |||||||||||||||||||| |||||| Sbjct: 378 gaggatgttggattatggctggaagaaattaaccttggtggctacagacaagtatttgaa 437 Query: 398 gaaaacagtgtcaatggagagtatctagagagcttgtcgatgtttactaccgagcagatt 457 ||||| ||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||| Sbjct: 438 gaaaatggtgtcaacggagaatatctagaaagcttgtccatgtttactactgagcagatt 497 Query: 458 c 458 | Sbjct: 498 c 498
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 123 bits (62), Expect = 5e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 353 tggcttgaagagataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaat 412 ||||||||||||||||| ||||| ||||||| ||||||||||| |||||| |||||||| Sbjct: 19970946 tggcttgaagagataaaccttggcagctacaggcaagtttttgaggaaaacggtgtcaat 19970887 Query: 413 ggagagtatctagagagcttgtcgatgtttactaccgagcagattc 458 ||||||||||| || ||| |||||||||||||||| || ||||||| Sbjct: 19970886 ggagagtatcttgaaagcctgtcgatgtttactacagaacagattc 19970841 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 281 agggagatgagccgcgggaggtctccggagccgcttgatttcttcatatggactgtcgag 340 |||||||||||||| ||| |||| ||||||||||| ||||||||||| ||||| |||||| Sbjct: 19973280 agggagatgagccgggggcggtcgccggagccgctggatttcttcatctggacagtcgag 19973221 Query: 341 g 341 | Sbjct: 19973220 g 19973220
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 123 bits (62), Expect = 5e-25 Identities = 95/106 (89%) Strand = Plus / Minus Query: 353 tggcttgaagagataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaat 412 ||||||||||||||||| ||||| ||||||| ||||||||||| |||||| |||||||| Sbjct: 19897160 tggcttgaagagataaaccttggcagctacaggcaagtttttgaggaaaacggtgtcaat 19897101 Query: 413 ggagagtatctagagagcttgtcgatgtttactaccgagcagattc 458 ||||||||||| || ||| |||||||||||||||| || ||||||| Sbjct: 19897100 ggagagtatcttgaaagcctgtcgatgtttactacagaacagattc 19897055 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 281 agggagatgagccgcgggaggtctccggagccgcttgatttcttcatatggactgtcgag 340 |||||||||||||| ||| |||| ||||||||||| ||||||||||| ||||| |||||| Sbjct: 19899494 agggagatgagccgggggcggtcgccggagccgctggatttcttcatctggacagtcgag 19899435 Query: 341 g 341 | Sbjct: 19899434 g 19899434
>emb|AL731888.5|CNS08C8S Oryza sativa chromosome 12, . BAC OJ1118_C12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165433 Score = 123 bits (62), Expect = 5e-25 Identities = 95/106 (89%) Strand = Plus / Plus Query: 353 tggcttgaagagataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaat 412 ||||||||||||||||| ||||| ||||||| ||||||||||| |||||| |||||||| Sbjct: 56314 tggcttgaagagataaaccttggcagctacaggcaagtttttgaggaaaacggtgtcaat 56373 Query: 413 ggagagtatctagagagcttgtcgatgtttactaccgagcagattc 458 ||||||||||| || ||| |||||||||||||||| || ||||||| Sbjct: 56374 ggagagtatcttgaaagcctgtcgatgtttactacagaacagattc 56419 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 281 agggagatgagccgcgggaggtctccggagccgcttgatttcttcatatggactgtcgag 340 |||||||||||||| ||| |||| ||||||||||| ||||||||||| ||||| |||||| Sbjct: 53980 agggagatgagccgggggcggtcgccggagccgctggatttcttcatctggacagtcgag 54039 Query: 341 g 341 | Sbjct: 54040 g 54040
>ref|NM_111655.3| Arabidopsis thaliana unknown protein AT3G07760 transcript variant AT3G07760.1 mRNA, complete cds Length = 780 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 153 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 212 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 213 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 272 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 273 tagaaagcatgtctgtgtttactaccgagcagat 306
>ref|NM_180207.1| Arabidopsis thaliana unknown protein AT3G07760 transcript variant AT3G07760.2 mRNA, complete cds Length = 766 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 154 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 213 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 214 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 273 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 274 tagaaagcatgtctgtgtttactaccgagcagat 307
>gb|BT014708.1| Arabidopsis thaliana At3g07760.2 mRNA sequence Length = 375 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 14 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 73 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 74 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 133 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 134 tagaaagcatgtctgtgtttactaccgagcagat 167
>gb|AY064693.1| Arabidopsis thaliana unknown protein mRNA, complete cds Length = 400 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 17 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 76 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 77 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 136 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 137 tagaaagcatgtctgtgtttactaccgagcagat 170
>gb|AF428412.1|AF428412 Arabidopsis thaliana At3g07760/F17A17.10 mRNA, complete cds Length = 814 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 197 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 256 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 257 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 316 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 317 tagaaagcatgtctgtgtttactaccgagcagat 350
>gb|AY054591.1| Arabidopsis thaliana Unknown protein mRNA, complete cds Length = 753 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 154 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 213 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 214 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 273 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 274 tagaaagcatgtctgtgtttactaccgagcagat 307
>emb|BX824593.1|CNS0A5KM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH59ZB08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 690 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 81 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 140 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 141 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 200 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 201 tagaaagcatgtctgtgtttactaccgagcagat 234
>emb|BX823377.1|CNS0A5GP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS2ZG01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 744 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 75 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 134 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 135 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 194 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 195 tagaaagcatgtctgtgtttactaccgagcagat 228
>gb|AY088501.1| Arabidopsis thaliana clone 7246 mRNA, complete sequence Length = 779 Score = 99.6 bits (50), Expect = 8e-18 Identities = 128/154 (83%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| |||||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 153 ctcccgagcctcttgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 212 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| ||||||||||||| |||| Sbjct: 213 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaatggagaatatc 272 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| |||| ||||||||||||||||||| Sbjct: 273 tagaaagcatgtctgtgtttactaccgagcagat 306
>emb|BX825228.1|CNS0A58A Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL21ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 637 Score = 75.8 bits (38), Expect = 1e-10 Identities = 125/154 (81%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgaggacgtcggcttgtggcttgaag 362 |||| ||||| || ||||||||||| |||||||| ||||| || || | ||||| || | Sbjct: 123 ctcccgagcctctcgatttcttcatctggactgttgaggatgttgggtcttggctcgagg 182 Query: 363 agataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaatggagagtatc 422 ||||||| ||||| |||||| | || |||| ||||||| |||| |||||||| |||| Sbjct: 183 agataaaccttgggggctaccgccagattttcaaagaaaatggtgtgaatggagaatatc 242 Query: 423 tagagagcttgtcgatgtttactaccgagcagat 456 |||| ||| | || ||||||||||||||||||| Sbjct: 243 tagaaagcatttctgtgtttactaccgagcagat 276
>gb|AY023480.1| Oryza sativa microsatellite MRG5805 containing (TCT)X8, genomic sequence Length = 224 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 281 agggagatgagccgcgggaggtctccggagccgcttgatttcttcatatggactgtcgag 340 |||||||||||||| ||| |||| ||||||||||| ||||||||||| ||||| |||||| Sbjct: 14 agggagatgagccgggggcggtcgccggagccgctggatttcttcatctggacagtcgag 73 Query: 341 g 341 | Sbjct: 74 g 74
>gb|AC009176.5|ATAC009176 Arabidopsis thaliana chromosome III P1 MLP3 genomic sequence, complete sequence Length = 79296 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 353 tggcttgaagagataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaat 412 ||||| || |||||||| ||||| |||||| | || |||| ||||||| |||||||| Sbjct: 63549 tggctcgaggagataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaat 63608 Query: 413 ggagagtatctagagagcttgtcgatgtttactaccgagcagat 456 ||||| |||||||| ||| |||| ||||||||||||||||||| Sbjct: 63609 ggagaatatctagaaagcatgtctgtgtttactaccgagcagat 63652 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgagg 341 |||| ||||| |||||||||||||| |||||||| |||| Sbjct: 62735 ctcccgagcctcttgatttcttcatctggactgttgagg 62773
>gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence, complete sequence Length = 121054 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Plus Query: 353 tggcttgaagagataaatcttggtggctacagacaagtttttgaagaaaacagtgtcaat 412 ||||| || |||||||| ||||| |||||| | || |||| ||||||| |||||||| Sbjct: 28583 tggctcgaggagataaaccttgggggctaccgccagattttcaaagaaaatggtgtcaat 28642 Query: 413 ggagagtatctagagagcttgtcgatgtttactaccgagcagat 456 ||||| |||||||| ||| |||| ||||||||||||||||||| Sbjct: 28643 ggagaatatctagaaagcatgtctgtgtttactaccgagcagat 28686 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 303 ctccggagccgcttgatttcttcatatggactgtcgagg 341 |||| ||||| |||||||||||||| |||||||| |||| Sbjct: 27769 ctcccgagcctcttgatttcttcatctggactgttgagg 27807
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 206 cgtcgcgtccctgccatctccaccccgtccgcgatctcgggc 247 |||| ||||||||| ||||||||||||| |||||||||||| Sbjct: 38405 cgtcccgtccctgctgtctccaccccgtcagcgatctcgggc 38446
>emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1-7c20, COMPLETE SEQUENCE Length = 127003 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 308 gagccgcttgatttcttcatatggactgtcgagg 341 |||||||||||||||||||| |||||||| |||| Sbjct: 21907 gagccgcttgatttcttcatctggactgttgagg 21940
>gb|AC103597.21| Mus musculus chromosome 18, clone RP23-435G4, complete sequence Length = 221083 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 139 cctcacccacccaacccctccc 160 |||||||||||||||||||||| Sbjct: 473 cctcacccacccaacccctccc 494
>gb|AC126695.4| Mus musculus BAC clone RP23-313D2 from 18, complete sequence Length = 171427 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 139 cctcacccacccaacccctccc 160 |||||||||||||||||||||| Sbjct: 99148 cctcacccacccaacccctccc 99127
>gb|AC011979.7| Homo sapiens chromosome 11, clone RP11-16F15, complete sequence Length = 154995 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 40 tgctctgccctgcccaagctccaatcctct 69 ||||||||||||||||| |||||| ||||| Sbjct: 72771 tgctctgccctgcccaaactccaaccctct 72800
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 gaggagggagatgagccgcggg 298 |||||||||||||||||||||| Sbjct: 29824039 gaggagggagatgagccgcggg 29824060
>gb|AC151713.4| Mus musculus BAC clone RP24-100K9 from chromosome 8, complete sequence Length = 199295 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 144 cccacccaacccctcccctctc 165 |||||||||||||||||||||| Sbjct: 99429 cccacccaacccctcccctctc 99450
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 gaggagggagatgagccgcggg 298 |||||||||||||||||||||| Sbjct: 80384 gaggagggagatgagccgcggg 80405
>gb|AC105327.13| Mus musculus chromosome 8, clone RP24-323I19, complete sequence Length = 215363 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 144 cccacccaacccctcccctctc 165 |||||||||||||||||||||| Sbjct: 6439 cccacccaacccctcccctctc 6418
>dbj|AP008952.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT45D07, TM0932b, complete sequence Length = 74001 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 308 gagccgcttgatttcttcatatggactgtcgagg 341 ||||| |||||||||||||| |||||||| |||| Sbjct: 64868 gagcctcttgatttcttcatctggactgttgagg 64901
>dbj|AP008949.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT44M23, TM1572a, complete sequence Length = 48924 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 308 gagccgcttgatttcttcatatggactgtcgagg 341 ||||| |||||||||||||| |||||||| |||| Sbjct: 18739 gagcctcttgatttcttcatctggactgttgagg 18772
>gb|AC163217.9| Mus musculus chromosome 1, clone RP23-474A1, complete sequence Length = 184175 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 ataaatcttggtggctacaga 385 ||||||||||||||||||||| Sbjct: 59206 ataaatcttggtggctacaga 59186
>gb|AC160533.6| Mus musculus chromosome 5, clone RP24-242L17, complete sequence Length = 170409 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ataaatcttggtggctacaga 385 ||||||||||||||||||||| Sbjct: 107935 ataaatcttggtggctacaga 107955
>gb|AC113044.9| Mus musculus chromosome 1, clone RP23-243J5, complete sequence Length = 186799 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ataaatcttggtggctacaga 385 ||||||||||||||||||||| Sbjct: 45025 ataaatcttggtggctacaga 45045
>emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment 9/24 Length = 299350 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 232 gtccgcgatctcgggcaccgt 252 ||||||||||||||||||||| Sbjct: 95470 gtccgcgatctcgggcaccgt 95450
>gb|AC140001.8| Mus musculus chromosome 5, clone RP24-276E6, complete sequence Length = 130466 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 ataaatcttggtggctacaga 385 ||||||||||||||||||||| Sbjct: 106348 ataaatcttggtggctacaga 106368
>gb|AC161262.2| Mus musculus BAC clone RP23-325G1 from chromosome 9, complete sequence Length = 204750 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ctctcatgctctgccctgcc 53 |||||||||||||||||||| Sbjct: 170149 ctctcatgctctgccctgcc 170168
>gb|AC002310.1|HUAC002310 Human Chromosome 16 BAC clone CIT987SK-A-635H12, complete sequence Length = 120955 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 35 tctcatgctctgccctgcccaagctcca 62 ||||| |||||||||||||| ||||||| Sbjct: 64736 tctcaggctctgccctgccctagctcca 64709
>gb|AC159619.2| Mus musculus BAC clone RP24-392J3 from chromosome 12, complete sequence Length = 171965 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 acaagtttttgaagaaaaca 404 |||||||||||||||||||| Sbjct: 26559 acaagtttttgaagaaaaca 26540
>ref|NM_002209.1| Homo sapiens integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) (ITGAL), mRNA Length = 5133 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 tctcatgctctgccctgcccaagctcca 62 ||||| |||||||||||||| ||||||| Sbjct: 4948 tctcaggctctgccctgccctagctcca 4975
>gb|DQ131904.1| Homo sapiens integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) (ITGAL) gene, complete cds Length = 53535 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 tctcatgctctgccctgcccaagctcca 62 ||||| |||||||||||||| ||||||| Sbjct: 51390 tctcaggctctgccctgccctagctcca 51417
>gb|AC120393.16| Mus musculus chromosome 7, clone RP24-312B12, complete sequence Length = 183977 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcccttcctctttccccaac 29 |||||||||||||||||||| Sbjct: 26918 tcccttcctctttccccaac 26937
>emb|Z94045.1|CSBGLZ C.stercorarium bglZ gene Length = 2620 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 ttgatttcttcatatggact 334 |||||||||||||||||||| Sbjct: 1289 ttgatttcttcatatggact 1270
>gb|AC137669.12| Medicago truncatula clone mth2-27m3, complete sequence Length = 120323 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 agacaagtttttgaagaaaa 402 |||||||||||||||||||| Sbjct: 116441 agacaagtttttgaagaaaa 116422 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 agacaagtttttgaagaaaa 402 |||||||||||||||||||| Sbjct: 103561 agacaagtttttgaagaaaa 103542
>gb|AC157099.5| Mus musculus 6 BAC RP24-467O4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173237 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 ctgccatctccaccccgtcc 235 |||||||||||||||||||| Sbjct: 141117 ctgccatctccaccccgtcc 141098
>gb|AC107223.5| Homo sapiens BAC clone RP11-1289C17 from 4, complete sequence Length = 183515 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ctcatgctctgccctgccca 55 |||||||||||||||||||| Sbjct: 166797 ctcatgctctgccctgccca 166816
>ref|NM_214600.1| Strongylocentrotus purpuratus seawi (LOC373434), mRNA Length = 3057 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 aatcttggtggctacagaca 387 |||||||||||||||||||| Sbjct: 1968 aatcttggtggctacagaca 1949
>gb|S72472.1| isoflavone reductase [Pisum sativum=peas, seedlings, Alaska Green, mRNA Partial, 957 nt] Length = 957 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 agacaagtttttgaagaaaa 402 |||||||||||||||||||| Sbjct: 412 agacaagtttttgaagaaaa 431
>gb|AY014901.1| Strongylocentrotus purpuratus clone C12/2 seawi mRNA, complete cds Length = 1723 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 aatcttggtggctacagaca 387 |||||||||||||||||||| Sbjct: 634 aatcttggtggctacagaca 615
>gb|AY014900.1| Strongylocentrotus purpuratus clone 6-2 seawi mRNA, partial cds Length = 2605 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 aatcttggtggctacagaca 387 |||||||||||||||||||| Sbjct: 1968 aatcttggtggctacagaca 1949
>gb|AY014899.1| Strongylocentrotus purpuratus seawi mRNA, complete cds Length = 3057 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 aatcttggtggctacagaca 387 |||||||||||||||||||| Sbjct: 1968 aatcttggtggctacagaca 1949
>gb|AC093249.4| Homo sapiens chromosome 16 clone RP11-146F11, complete sequence Length = 185664 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 35 tctcatgctctgccctgcccaagctcca 62 ||||| |||||||||||||| ||||||| Sbjct: 184109 tctcaggctctgccctgccctagctcca 184082
>gb|AF277052.1|AF277052 Medicago truncatula isoflavone reductase mRNA, complete cds Length = 1223 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 agacaagtttttgaagaaaa 402 |||||||||||||||||||| Sbjct: 484 agacaagtttttgaagaaaa 503
>emb|X58078.1|MSISREDMR M.sativa mRNA for isoflavone reductase Length = 1181 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 agacaagtttttgaagaaaa 402 |||||||||||||||||||| Sbjct: 463 agacaagtttttgaagaaaa 482
>emb|CT485798.2| Medicago truncatula chromosome 5 clone mth2-24d7, COMPLETE SEQUENCE Length = 115553 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 383 agacaagtttttgaagaaaa 402 |||||||||||||||||||| Sbjct: 693 agacaagtttttgaagaaaa 674
>gb|AC125468.5| Mus musculus BAC clone RP24-113D21 from 7, complete sequence Length = 197913 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcccttcctctttccccaac 29 |||||||||||||||||||| Sbjct: 154380 tcccttcctctttccccaac 154399
>gb|U17436.1|MSU17436 Medicago sativa isoflavone reductase (IFR) gene, complete cds Length = 2730 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 agacaagtttttgaagaaaa 402 |||||||||||||||||||| Sbjct: 1491 agacaagtttttgaagaaaa 1510
>gb|AC123620.14| Mus musculus chromosome 12, clone RP23-53J21, complete sequence Length = 182783 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 acaagtttttgaagaaaaca 404 |||||||||||||||||||| Sbjct: 15226 acaagtttttgaagaaaaca 15245
>gb|AC131187.4| Mus musculus BAC clone RP24-250M7 from 13, complete sequence Length = 159288 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 acaaccaccaccgtgttcta 99 |||||||||||||||||||| Sbjct: 1998 acaaccaccaccgtgttcta 2017
>gb|AC129085.6| Mus musculus BAC clone RP23-293B11 from 13, complete sequence Length = 206677 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 acaaccaccaccgtgttcta 99 |||||||||||||||||||| Sbjct: 49148 acaaccaccaccgtgttcta 49129
>emb|AL845531.3| Mouse DNA sequence from clone RP23-232I4 on chromosome 2, complete sequence Length = 120366 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 tttttgaagaaaacagtgtc 409 |||||||||||||||||||| Sbjct: 7192 tttttgaagaaaacagtgtc 7173
>emb|AL670959.8| Mouse DNA sequence from clone RP23-94L5 on chromosome 4, complete sequence Length = 262388 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tcacccacccaacccctccc 160 |||||||||||||||||||| Sbjct: 180154 tcacccacccaacccctccc 180173
>gb|AC164161.2| Mus musculus BAC clone RP23-274G21 from chromosome 9, complete sequence Length = 198367 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 ctctcatgctctgccctgcc 53 |||||||||||||||||||| Sbjct: 12682 ctctcatgctctgccctgcc 12701
>emb|Y00796.1|HSFLA1A Human mRNA for leukocyte-associated molecule-1 alpha subunit (LFA-1 alpha subunit) Length = 5133 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 35 tctcatgctctgccctgcccaagctcca 62 ||||| |||||||||||||| ||||||| Sbjct: 4948 tctcaggctctgccctgccctagctcca 4975 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,808,079 Number of Sequences: 3902068 Number of extensions: 3808079 Number of successful extensions: 83698 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83484 Number of HSP's gapped (non-prelim): 214 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)