ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet07a07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 349 bits (176), Expect = 5e-93 Identities = 374/440 (85%) Strand = Plus / Minus Query: 21 ttcatgtggacagttgtgtggtgtcccaaggagggaatgcaagcatacttgcaatgctcc 80 ||||||||||||| | ||||||| ||||||||||||||| ||||| ||||||| ||||| Sbjct: 7933067 ttcatgtggacaggtatgtggtgccccaaggagggaatgtaagcacacttgcacagctcc 7933008 Query: 81 atgccacccatcgtcaccttgcccagacgtgagatgtgaacaccgtgtgactataacttg 140 |||||||||||| |||||||||||||| ||||||||||| || | |||| || | || Sbjct: 7933007 atgccacccatcatcaccttgcccagatttgagatgtgaattccctatgaccattgcctg 7932948 Query: 141 ttcttgtggccgtattactacaactgtgccctgcagtgctggtggagcctacaatggtga 200 |||||||||||||| ||| |||||||||| ||||||||||| ||| || |||||| || Sbjct: 7932947 ctcttgtggccgtatcactgcaactgtgccatgcagtgctgggggaaccgccaatggcga 7932888 Query: 201 tagtgcgttcgatatctctgtcatgcagcagctgccaatccctctccaaccagtggaatc 260 || | ||| || | || |||| ||| |||||||||| || ||||| || |||||||| Sbjct: 7932887 taatatgtttgaagtatccatcatacagaagctgccaatgccactccagccggtggaatc 7932828 Query: 261 aaatgggaagagggttcctcttgggcagagaaaactctgttgtgatgaggagtgcgcaaa 320 |||||| |||||| || ||||||||||| || |||| |||||||||||| || || || Sbjct: 7932827 tgatgggaggagggtaccacttgggcagaggaagctctcttgtgatgaggactgtgccaa 7932768 Query: 321 aatggagaggaaaagggtccttgctgaagcttttgacattaccccacccaatcttgatgc 380 ||||||||||| ||||||||||||||||| |||||||| || ||||||||| | ||||| Sbjct: 7932767 gatggagaggaagagggtccttgctgaagcatttgacatcactccacccaatttggatgc 7932708 Query: 381 actgcattttggtgagaactcaaatgcgtcggatttgctttctgatcttttccggcgtga 440 | ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 7932707 attgcattttggtgagaactcaaatgcatcggatttgctttctgaccttttccgccgtga 7932648 Query: 441 gccaaagtgggtgctggcca 460 |||||| |||||| |||||| Sbjct: 7932647 gccaaaatgggtgatggcca 7932628
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 349 bits (176), Expect = 5e-93 Identities = 374/440 (85%) Strand = Plus / Minus Query: 21 ttcatgtggacagttgtgtggtgtcccaaggagggaatgcaagcatacttgcaatgctcc 80 ||||||||||||| | ||||||| ||||||||||||||| ||||| ||||||| ||||| Sbjct: 40585 ttcatgtggacaggtatgtggtgccccaaggagggaatgtaagcacacttgcacagctcc 40526 Query: 81 atgccacccatcgtcaccttgcccagacgtgagatgtgaacaccgtgtgactataacttg 140 |||||||||||| |||||||||||||| ||||||||||| || | |||| || | || Sbjct: 40525 atgccacccatcatcaccttgcccagatttgagatgtgaattccctatgaccattgcctg 40466 Query: 141 ttcttgtggccgtattactacaactgtgccctgcagtgctggtggagcctacaatggtga 200 |||||||||||||| ||| |||||||||| ||||||||||| ||| || |||||| || Sbjct: 40465 ctcttgtggccgtatcactgcaactgtgccatgcagtgctgggggaaccgccaatggcga 40406 Query: 201 tagtgcgttcgatatctctgtcatgcagcagctgccaatccctctccaaccagtggaatc 260 || | ||| || | || |||| ||| |||||||||| || ||||| || |||||||| Sbjct: 40405 taatatgtttgaagtatccatcatacagaagctgccaatgccactccagccggtggaatc 40346 Query: 261 aaatgggaagagggttcctcttgggcagagaaaactctgttgtgatgaggagtgcgcaaa 320 |||||| |||||| || ||||||||||| || |||| |||||||||||| || || || Sbjct: 40345 tgatgggaggagggtaccacttgggcagaggaagctctcttgtgatgaggactgtgccaa 40286 Query: 321 aatggagaggaaaagggtccttgctgaagcttttgacattaccccacccaatcttgatgc 380 ||||||||||| ||||||||||||||||| |||||||| || ||||||||| | ||||| Sbjct: 40285 gatggagaggaagagggtccttgctgaagcatttgacatcactccacccaatttggatgc 40226 Query: 381 actgcattttggtgagaactcaaatgcgtcggatttgctttctgatcttttccggcgtga 440 | ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 40225 attgcattttggtgagaactcaaatgcatcggatttgctttctgaccttttccgccgtga 40166 Query: 441 gccaaagtgggtgctggcca 460 |||||| |||||| |||||| Sbjct: 40165 gccaaaatgggtgatggcca 40146
>dbj|AK066448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060O14, full insert sequence Length = 2778 Score = 341 bits (172), Expect = 1e-90 Identities = 373/440 (84%) Strand = Plus / Plus Query: 21 ttcatgtggacagttgtgtggtgtcccaaggagggaatgcaagcatacttgcaatgctcc 80 ||||||||||||| | ||||||| ||||||||||||||| |||| ||||||| ||||| Sbjct: 1233 ttcatgtggacaggtatgtggtgccccaaggagggaatgtaagcgcacttgcacagctcc 1292 Query: 81 atgccacccatcgtcaccttgcccagacgtgagatgtgaacaccgtgtgactataacttg 140 |||||||||||| |||||||||||||| ||||||||||| || | |||| || | || Sbjct: 1293 atgccacccatcatcaccttgcccagatttgagatgtgaattccctatgaccattgcctg 1352 Query: 141 ttcttgtggccgtattactacaactgtgccctgcagtgctggtggagcctacaatggtga 200 |||||||||||||| ||| |||||||||| ||||||||||| ||| || |||||| || Sbjct: 1353 ctcttgtggccgtatcactgcaactgtgccatgcagtgctgggggaaccgccaatggcga 1412 Query: 201 tagtgcgttcgatatctctgtcatgcagcagctgccaatccctctccaaccagtggaatc 260 || | ||| || | || |||| ||| |||||||||| || ||||| || |||||||| Sbjct: 1413 taatatgtttgaagtatccatcatacagaagctgccaatgccactccagccggtggaatc 1472 Query: 261 aaatgggaagagggttcctcttgggcagagaaaactctgttgtgatgaggagtgcgcaaa 320 |||||| |||||| || ||||||||||| || |||| |||||||||||| || || || Sbjct: 1473 tgatgggaggagggtaccacttgggcagaggaagctctcttgtgatgaggactgtgccaa 1532 Query: 321 aatggagaggaaaagggtccttgctgaagcttttgacattaccccacccaatcttgatgc 380 ||||||||||| ||||||||||||||||| |||||||| || ||||||||| | ||||| Sbjct: 1533 gatggagaggaagagggtccttgctgaagcatttgacatcactccacccaatttggatgc 1592 Query: 381 actgcattttggtgagaactcaaatgcgtcggatttgctttctgatcttttccggcgtga 440 | ||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 1593 attgcattttggtgagaactcaaatgcatcggatttgctttctgaccttttccgccgtga 1652 Query: 441 gccaaagtgggtgctggcca 460 |||||| |||||| |||||| Sbjct: 1653 gccaaaatgggtgatggcca 1672
>gb|AY224502.1| Oryza sativa (japonica cultivar-group) isolate 31150 TF-like protein mRNA, partial cds Length = 3052 Score = 272 bits (137), Expect = 9e-70 Identities = 324/385 (84%), Gaps = 1/385 (0%) Strand = Plus / Plus Query: 76 gctccatgccacccatcgtcaccttgcccagacgtgagatgtgaacaccgtgtgactata 135 |||||||||||||||| | |||||||||||| ||||||||||| || | |||| || Sbjct: 1799 gctccatgccacccatatt-accttgcccagatttgagatgtgaattccctatgaccatt 1857 Query: 136 acttgttcttgtggccgtattactacaactgtgccctgcagtgctggtggagcctacaat 195 | || |||||||||||||| ||| |||||||||| ||||||||||| ||| || |||| Sbjct: 1858 gcctgctcttgtggccgtatcactgcaactgtgccatgcagtgctgggggaaccgccaat 1917 Query: 196 ggtgatagtgcgttcgatatctctgtcatgcagcagctgccaatccctctccaaccagtg 255 || |||| | ||| || | || |||| ||| |||||||||| || ||||| || ||| Sbjct: 1918 ggcgataatatgtttgaagtatccatcatacagaagctgccaatgccactccagccggtg 1977 Query: 256 gaatcaaatgggaagagggttcctcttgggcagagaaaactctgttgtgatgaggagtgc 315 ||||| |||||| |||||| || ||||||||||| || |||| |||||||||||| || Sbjct: 1978 gaatctgatgggaggagggtaccacttgggcagaggaagctctcttgtgatgaggactgt 2037 Query: 316 gcaaaaatggagaggaaaagggtccttgctgaagcttttgacattaccccacccaatctt 375 || || ||||||||||| ||||||||||||||||| |||||||| || ||||||||| | Sbjct: 2038 gccaagatggagaggaagagggtccttgctgaagcatttgacatcactccacccaatttg 2097 Query: 376 gatgcactgcattttggtgagaactcaaatgcgtcggatttgctttctgatcttttccgg 435 |||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct: 2098 gatgcattgcattttggtgagaactcaaatgcatcggatttgctttctgaccttttccgc 2157 Query: 436 cgtgagccaaagtgggtgctggcca 460 ||||||||||| |||||| |||||| Sbjct: 2158 cgtgagccaaaatgggtgatggcca 2182
>dbj|AP007285.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01H08, TM0053, complete sequence Length = 109326 Score = 48.1 bits (24), Expect = 0.025 Identities = 66/80 (82%) Strand = Plus / Plus Query: 76 gctccatgccacccatcgtcaccttgcccagacgtgagatgtgaacaccgtgtgactata 135 |||||||||||||| || || |||||||| || | | ||||||| || ||| || || Sbjct: 53007 gctccatgccacccttcatctccttgccctgatataaaatgtgaattccctgttacaatc 53066 Query: 136 acttgttcttgtggccgtat 155 |||||||||||||||||||| Sbjct: 53067 acttgttcttgtggccgtat 53086
>ref|XM_426720.1| PREDICTED: Gallus gallus similar to G protein-coupled receptor 119 (LOC429165), mRNA Length = 1362 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 168 gccctgcagtgctggtggagcctacaa 194 ||||||||||||||||| ||||||||| Sbjct: 72 gccctgcagtgctggtgcagcctacaa 98
>ref|XM_422473.1| PREDICTED: Gallus gallus similar to Mothers against decapentaplegic homolog interacting protein (Madh-interacting protein) (Smad anchor for receptor activation) (Receptor activation anchor) (hSARA) (Novel serine protease) (NSP) (LOC424639), mRNA Length = 5631 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 atctctgtcatgcagcagctg 234 ||||||||||||||||||||| Sbjct: 4222 atctctgtcatgcagcagctg 4242
>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence Length = 205764 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gagaaaactctgttgtgatga 308 ||||||||||||||||||||| Sbjct: 169592 gagaaaactctgttgtgatga 169572
>gb|AC159262.3| Mus musculus BAC clone RP24-82I20 from chromosome 8, complete sequence Length = 235024 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 gtgagccaaagtgggtgctgg 457 ||||||||||||||||||||| Sbjct: 188765 gtgagccaaagtgggtgctgg 188745
>gb|AC132147.4| Mus musculus BAC clone RP23-2F11 from 8, complete sequence Length = 237167 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 gtgagccaaagtgggtgctgg 457 ||||||||||||||||||||| Sbjct: 185784 gtgagccaaagtgggtgctgg 185804
>gb|AY764157.1| Homo sapiens NIN/PDGFRB fusion protein (NIN/PDGFRB fusion) gene, exons 28, 12 and partial cds Length = 2598 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tcttgggcagagaaaactctgttg 302 |||||||||||||||| ||||||| Sbjct: 463 tcttgggcagagaaaaatctgttg 440
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tgcaagcatacttgcaatgc 77 |||||||||||||||||||| Sbjct: 2169115 tgcaagcatacttgcaatgc 2169134
>gb|AC151132.3| Bos taurus BAC CH240-106N15 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 171239 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 tttgctttctgatcttttcc 433 |||||||||||||||||||| Sbjct: 105587 tttgctttctgatcttttcc 105568
>ref|XM_414704.1| PREDICTED: Gallus gallus similar to Solh protein (LOC416389), mRNA Length = 4275 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cctgcagtgctggtggagcc 189 |||||||||||||||||||| Sbjct: 1399 cctgcagtgctggtggagcc 1418
>gb|U28929.1| Caenorhabditis elegans cosmid F09C12, complete sequence Length = 25662 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 gcaaaaatggagaggaaaag 335 |||||||||||||||||||| Sbjct: 15006 gcaaaaatggagaggaaaag 14987
>emb|AL353132.18| Human DNA sequence from clone RP11-189G24 on chromosome 20 Contains the CYB5P4 gene for cytochrome b-5 pseudogene 4 and a kinesin-like 7 (KNSL7) pseudogene, complete sequence Length = 93965 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 cttgggcagagaaaactctg 299 |||||||||||||||||||| Sbjct: 22949 cttgggcagagaaaactctg 22968
>gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's Hospital Oakland Research Institute) complete sequence Length = 226532 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ggagaggaaaagggtccttg 343 |||||||||||||||||||| Sbjct: 61111 ggagaggaaaagggtccttg 61130
>gb|AC007529.5| Homo sapiens 12p13 BAC RPCI11-69C13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147239 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 atttgctttctgatcttttc 432 |||||||||||||||||||| Sbjct: 2185 atttgctttctgatcttttc 2166
>emb|AL606834.1|CNS07EGV Human chromosome 14 DNA sequence BAC R-248J18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 179138 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tcttgggcagagaaaactctgttg 302 |||||||||||||||| ||||||| Sbjct: 14437 tcttgggcagagaaaaatctgttg 14414
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 ctttctgatcttttccggcg 437 |||||||||||||||||||| Sbjct: 2601681 ctttctgatcttttccggcg 2601662
>emb|AL133485.3|CNS01DV8 Human chromosome 14 DNA sequence BAC R-286O18 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 135978 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 tcttgggcagagaaaactctgttg 302 |||||||||||||||| ||||||| Sbjct: 2681 tcttgggcagagaaaaatctgttg 2704 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,516,743 Number of Sequences: 3902068 Number of extensions: 4516743 Number of successful extensions: 73953 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73865 Number of HSP's gapped (non-prelim): 82 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
