ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet06g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g1... 63 2e-10
2HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC... 51 8e-07
3HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (... 51 8e-07
4HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K 51 8e-07
5HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (... 51 8e-07
6FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUS... 44 1e-04
7PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3) 41 6e-04
8PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3) 41 6e-04
9VIGLN_CHICK (P81021) Vigilin 40 0.001
10NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncologic... 40 0.002
11PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4) 40 0.002
12PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4) 40 0.002
13FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUS... 40 0.002
14PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR... 39 0.002
15PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR... 39 0.002
16PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR... 39 0.002
17PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC... 39 0.002
18FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUS... 39 0.002
19VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding p... 39 0.003
20VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding pro... 39 0.004
21VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding p... 39 0.004
22NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological... 39 0.004
23NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncologic... 39 0.004
24NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncologic... 38 0.005
25PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC... 38 0.007
26NU155_RAT (P37199) Nuclear pore complex protein Nup155 (Nucleopo... 37 0.011
27TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein 37 0.011
28TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein 37 0.011
29PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR... 37 0.015
30PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put... 37 0.015
31RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3) 36 0.020
32NU155_MOUSE (Q99P88) Nuclear pore complex protein Nup155 (Nucleo... 36 0.025
33RS3_HALMA (P20281) 30S ribosomal protein S3P (HmaS3) (HS1) 36 0.025
34NU155_HUMAN (O75694) Nuclear pore complex protein Nup155 (Nucleo... 35 0.043
35PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC... 35 0.057
36PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC... 35 0.057
37FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUS... 33 0.13
38MTPC1_ARATH (Q8L725) Metal tolerance protein C1 (AtMTPc1) 33 0.13
39FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-... 33 0.13
40ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2 33 0.13
41PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC... 32 0.28
42PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC... 32 0.37
43Y443_METJA (Q57885) Hypothetical protein MJ0443 32 0.37
44FXR2_HUMAN (P51116) Fragile X mental retardation syndrome-relate... 32 0.37
45PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC... 32 0.48
46PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC... 32 0.48
47PBP2_YEAST (P38151) PAB1-binding protein 2 32 0.48
48Y1533_METJA (Q58928) Hypothetical protein MJ1533 32 0.48
49SC160_YEAST (P06105) Protein SCP160 (Protein HX) 31 0.63
50PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC... 30 1.1
51PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC... 30 1.4
52SYA_CHLTE (Q8KG04) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 30 1.4
53RS3_NATPD (Q3IMY2) 30S ribosomal protein S3P 30 1.8
54FXR2_MOUSE (Q9WVR4) Fragile X mental retardation syndrome-relate... 30 1.8
55RS3_METTH (O26116) 30S ribosomal protein S3P 29 2.4
56FMR1_XENLA (P51113) Fragile X mental retardation protein 1 homol... 29 2.4
57FMR1_HUMAN (Q06787) Fragile X mental retardation 1 protein (Prot... 29 3.1
58NUCL_CHICK (P15771) Nucleolin (Protein C23) 29 3.1
59RS3_CAMJR (Q5HS96) 30S ribosomal protein S3 29 3.1
60RS3_CAMJE (Q9PLX7) 30S ribosomal protein S3 29 3.1
61MTH5_DROME (Q9VGG8) Probable G-protein coupled receptor Mth-like... 29 3.1
62NUSA_METJA (Q58447) NusA protein homolog 28 4.1
63Y1473_CAUCR (P58113) Hypothetical protein CC1473 28 4.1
64BRO1_CANGA (Q6FJG8) Vacuolar protein-sorting protein BRO1 (BRO d... 28 4.1
65P2RX1_MOUSE (P51576) P2X purinoceptor 1 (ATP receptor) (P2X1) (P... 28 5.3
66CBIX_SYNY3 (Q55451) Sirohydrochlorin cobaltochelatase (EC 4.99.1... 28 5.3
67Y2058_BRAJA (Q9AMW4) Putative cysteine protease yopT-like blr205... 28 5.3
68Y1857_THEMA (Q9X2H2) UPF0144 protein TM1857 28 5.3
69ZHX3_RAT (Q80Z36) Zinc finger and homeobox protein 3 (Fragment) 28 5.3
70TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription... 28 5.3
71HISX_METTH (O26327) Histidinol dehydrogenase (EC 1.1.1.23) (HDH) 28 6.9
72RS3_LACJO (Q74L83) 30S ribosomal protein S3 28 6.9
73RS3_ENTFA (Q839F8) 30S ribosomal protein S3 28 6.9
74RS3_LACPL (Q88XY0) 30S ribosomal protein S3 28 6.9
75DDX43_HUMAN (Q9NXZ2) Probable ATP-dependent RNA helicase DDX43 (... 28 6.9
76YKR1_CAEEL (P34307) Hypothetical protein C06G4.1 in chromosome III 28 6.9
77K0056_MOUSE (Q6ZQK0) Protein KIAA0056 27 9.1
78DLD_ECOLI (P06149) D-lactate dehydrogenase (EC 1.1.1.28) (Respir... 27 9.1
79VILD_DICDI (Q8WQ85) Villidin 27 9.1
80GTSE1_MOUSE (Q8R080) G2 and S phase expressed protein 1 (Gtse-1)... 27 9.1
81RS3_STAAW (P66554) 30S ribosomal protein S3 27 9.1
82RS3_STAAS (Q6G777) 30S ribosomal protein S3 27 9.1
83RS3_STAAR (Q6GEI9) 30S ribosomal protein S3 27 9.1
84RS3_STAAN (P66553) 30S ribosomal protein S3 27 9.1
85RS3_STAAM (P66552) 30S ribosomal protein S3 27 9.1
86RS3_STAAC (Q5HDW4) 30S ribosomal protein S3 27 9.1
87RS3_STAAB (Q2YYQ2) 30S ribosomal protein S3 27 9.1
88RS3_HELPJ (Q9ZJR9) 30S ribosomal protein S3 27 9.1 
>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375|
          Length = 606

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 7/136 (5%)
 Frame = +2

Query: 2   LPSELS--VYPASNLYSVSDASMPSGHPSLSILGAPSHGS--HVPEFTVPTD-AHGGLPI 166
           +PS+LS  VYP +  YS  D  +  G       G PS+ +   V +F    + A   +P+
Sbjct: 239 VPSDLSNSVYPQTGFYSNQDHILQQG------AGVPSYFNALSVSDFQGYAETAANPVPV 292

Query: 167 YHSMVSAIPTYNAPKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDA-- 340
           + S +     +     S EL+ +V CP   I  VIGKGG TI+ IR+ SG+ ++V+D+  
Sbjct: 293 FASSLPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRT 352

Query: 341 KNDKEESIITITSTEA 388
           K   +E +I +T+TE+
Sbjct: 353 KCGDDECVIIVTATES 368



 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
 Frame = +2

Query: 44  SVSDASMPSGHPSLSIL-GAPSHGSHVPEF------TVPTDAHGGLPIYHSMVSAIPTYN 202
           SV+    P+   + S L G+ + G  +P F      T     +G  P   +++ +   Y+
Sbjct: 469 SVATRKPPARTDNCSFLSGSSNAGYTLPSFMSSMASTSGFHGYGSFPAGDNVLGSTGPYS 528

Query: 203 APKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITST 382
             +      L +  PA  +  V+GKGG  + +IR+ SGA +++  +K    + I  ++ T
Sbjct: 529 YGRLPSSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGT 588



 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +2

Query: 224 LLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITI 373
           ++ R+ CP D +G VIGK G  I +IR  + A++ V D  +   + +ITI
Sbjct: 36  VVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITI 85



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 257 IGFVIGKGGVTIRSIRKESGARVDVDDAKND 349
           IG VIGK G  I  IRK + A + +   K D
Sbjct: 406 IGCVIGKSGSVINEIRKRTNANICISKGKKD 436
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>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC|
           stretch-binding protein) (CSBP)
          Length = 463

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           +V  P D  G +IGKGG  I+ IR ESGA + +D+     E+ IITIT T+
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITS 379
           LR+   +   G VIGKGG  I+++R +  A V V D+     E I++I++
Sbjct: 45  LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISA 92
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>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
          Length = 463

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           +V  P D  G +IGKGG  I+ IR ESGA + +D+     E+ IITIT T+
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITS 379
           LR+   +   G VIGKGG  I+++R +  A V V D+     E I++I++
Sbjct: 45  LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISA 92
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>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K|
          Length = 463

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           +V  P D  G +IGKGG  I+ IR ESGA + +D+     E+ IITIT T+
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITS 379
           LR+   +   G VIGKGG  I+++R +  A V V D+     E I++I++
Sbjct: 45  LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISA 92
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>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
           (Transformation up-regulated nuclear protein) (TUNP)
          Length = 463

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           +V  P D  G +IGKGG  I+ IR ESGA + +D+     E+ IITIT T+
Sbjct: 391 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 18/50 (36%), Positives = 29/50 (58%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITS 379
           LR+   +   G VIGKGG  I+++R +  A V V D+     E I++I++
Sbjct: 45  LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSG--PERILSISA 92
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>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding|
           protein 3)
          Length = 572

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
 Frame = +2

Query: 89  ILGAPS---HGSHVPEFTVPT----DAHGGLPIYHSMVSAIPTYNAPKCSGELLLRVACP 247
           ++G P    H +H+    + T    D  GGL            ++     G   +    P
Sbjct: 303 VMGPPDRCQHAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVP 362

Query: 248 ADKIGFVIGKGGVTIRSIRKESGARVDV 331
           ADK G VIGKGG  I+SI ++SGA V++
Sbjct: 363 ADKCGLVIGKGGENIKSINQQSGAHVEL 390



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 215 SGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARV 325
           S   +  +  PA K+G VIG+GG TI+ +++ +G ++
Sbjct: 160 SNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKM 196



 Score = 33.9 bits (76), Expect = 0.097
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITST 382
           P   +GF+IG+GG  I  I+ ESG ++ +    +   E    +T T
Sbjct: 85  PDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGT 130
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>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTEA 388
           P D IG +IG+ G  I  IR+ SGA++ + +A     E  ITIT T A
Sbjct: 269 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPA 316



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 19/51 (37%), Positives = 35/51 (68%)
 Frame = +2

Query: 224 LLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITIT 376
           L +R+     ++G +IGK G T++ +R+ESGAR+++  ++ +  E I+TIT
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--SEGNCPERIVTIT 62
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>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTEA 388
           P D IG +IG+ G  I  IR+ SGA++ + +A     E  ITIT T A
Sbjct: 269 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPA 316



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 19/51 (37%), Positives = 35/51 (68%)
 Frame = +2

Query: 224 LLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITIT 376
           L +R+     ++G +IGK G T++ +R+ESGAR+++  ++ +  E I+TIT
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI--SEGNCPERIVTIT 62
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>VIGLN_CHICK (P81021) Vigilin|
          Length = 1270

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +2

Query: 263 FVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           F+IGKGG  IR +R  +GAR+ +     DK++ +ITI  TE
Sbjct: 741 FLIGKGGGNIRKVRDNTGARI-IFPTSEDKDQELITIMGTE 780



 Score = 31.2 bits (69), Expect = 0.63
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 266 VIGKGGVTIRSIRKESGARVDVDDAKNDKEESIIT 370
           +IGKGG  I+ IR+ES  ++D+   +   +  +++
Sbjct: 595 IIGKGGANIKKIREESNTKIDLPGREQATQRQLLS 629
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>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral|
           antigen 2) (Astrocytic NOVA1-like RNA-binding protein)
          Length = 492

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKN 346
           GE  L+V  P+   G +IGKGG TI  ++KE+GA + +  +K+
Sbjct: 31  GEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 73



 Score = 34.3 bits (77), Expect = 0.074
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKN--DKEESIITIT 376
           ++  P    G +IGKGG T++++ ++SGA V +       + +E ++T++
Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVS 183



 Score = 33.5 bits (75), Expect = 0.13
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +2

Query: 215 SGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDV 331
           S + L+ +A P + +G ++GKGG T+   ++ +GAR+ +
Sbjct: 404 SAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI 442
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>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 22/61 (36%), Positives = 36/61 (59%)
 Frame = +2

Query: 206 PKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           P+ S  L LR+     ++G +IGK G T++ IR++S AR+ +  ++    E I TIT + 
Sbjct: 12  PELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI--SEGSCPERITTITGST 69

Query: 386 A 388
           A
Sbjct: 70  A 70



 Score = 34.3 bits (77), Expect = 0.074
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITST 382
           P D IG VIG+ G  I  IR+ SGA + + +      E  +TIT +
Sbjct: 249 PNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGS 294
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>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 22/61 (36%), Positives = 36/61 (59%)
 Frame = +2

Query: 206 PKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           P+ S  L LR+     ++G +IGK G T++ IR++S AR+ +  ++    E I TIT + 
Sbjct: 12  PELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI--SEGSCPERITTITGST 69

Query: 386 A 388
           A
Sbjct: 70  A 70



 Score = 34.3 bits (77), Expect = 0.074
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITST 382
           P D IG VIG+ G  I  IR+ SGA + + +      E  +TIT +
Sbjct: 249 PNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGS 294
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>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP)
          Length = 651

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDA---KNDKEESIITITST 382
           P  K G +IGKGG TI+SI ++SGAR+++  +     D    + TI  T
Sbjct: 380 PTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGT 428



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDV--DDAKNDKEESIITIT 376
           G  +  +  PA K G VIGKGG TI+ +++ +G ++ +  D  +N   +  + IT
Sbjct: 180 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRIT 234



 Score = 34.3 bits (77), Expect = 0.074
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +2

Query: 143 DAHGGLPIYHSMVSAIPTYNAPKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGAR 322
           DA    P   S  + +P  +  +    +      P   +GF+IG+GG  I  I++ESG +
Sbjct: 70  DAKKVPPQNDSFGAQLPPMHQQQSRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCK 129

Query: 323 VDVDDAKNDKEESIITITST 382
           + +        E    +T T
Sbjct: 130 IQIAPDSGGLPERSCMLTGT 149
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>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 19/51 (37%), Positives = 35/51 (68%)
 Frame = +2

Query: 224 LLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITIT 376
           L +R+     ++G +IGK G +++ IR+ESGAR+++  ++ +  E IIT+T
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT 62



 Score = 32.7 bits (73), Expect = 0.22
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTEA 388
           P + IG +IG+ G  I  IR+ SGA++ + +         +TIT + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAA 334
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>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 19/51 (37%), Positives = 35/51 (68%)
 Frame = +2

Query: 224 LLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITIT 376
           L +R+     ++G +IGK G +++ IR+ESGAR+++  ++ +  E IIT+T
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT 62



 Score = 32.7 bits (73), Expect = 0.22
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTEA 388
           P + IG +IG+ G  I  IR+ SGA++ + +         +TIT + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAA 334
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>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 19/51 (37%), Positives = 35/51 (68%)
 Frame = +2

Query: 224 LLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITIT 376
           L +R+     ++G +IGK G +++ IR+ESGAR+++  ++ +  E IIT+T
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT 62



 Score = 32.7 bits (73), Expect = 0.22
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTEA 388
           P + IG +IG+ G  I  IR+ SGA++ + +         +TIT + A
Sbjct: 287 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAA 334
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>PNP_HAEIN (P44584) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 709

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +2

Query: 254 KIGFVIGKGGVTIRSIRKESGARVDVDD 337
           KI  VIGKGG TIRS+ +E+G  +D+DD
Sbjct: 563 KIKDVIGKGGATIRSLTEETGTSIDIDD 590
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>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDV 331
           P  K G +IGKGG TI+SI ++SGAR+++
Sbjct: 383 PTGKTGLIIGKGGETIKSISQQSGARIEL 411



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDV--DDAKNDKEESIITIT 376
           G  +  +  PA K G VIGKGG TI+ +++ +G ++ +  D  +N   +  + IT
Sbjct: 183 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRIT 237



 Score = 33.9 bits (76), Expect = 0.097
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITST 382
           P   +GF+IG+GG  I  I++ESG ++ +        E    +T T
Sbjct: 107 PDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT 152
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>VIGLN_HUMAN (Q00341) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/41 (48%), Positives = 27/41 (65%)
 Frame = +2

Query: 263 FVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           F+IGKGG  IR +R  +GARV +  A  DK++ +ITI   E
Sbjct: 741 FLIGKGGGKIRKVRDSTGARV-IFPAAEDKDQDLITIIGKE 780



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 266 VIGKGGVTIRSIRKESGARVDVDDAKNDKEESIIT 370
           +IGKGG  I+ IR+ES  ++D+    ++ E  IIT
Sbjct: 596 IIGKGGANIKKIREESNTKIDLPAENSNSETIIIT 630
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>VIGLN_RAT (Q9Z1A6) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +2

Query: 263 FVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           F+IGKGG  IR +R  +GAR+ +  A  DK++ +ITI   E
Sbjct: 741 FLIGKGGGKIRKVRDSTGARI-IFPAAEDKDQDLITIIGKE 780



 Score = 35.0 bits (79), Expect = 0.043
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 266 VIGKGGVTIRSIRKESGARVDVDDAKNDKEESIIT 370
           +IGKGG  I+ IR+ES  ++D+    ++ E  +IT
Sbjct: 596 IIGKGGANIKKIREESNTKIDLPAENSNSETIVIT 630
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>VIGLN_MOUSE (Q8VDJ3) Vigilin (High density lipoprotein-binding protein)|
           (HDL-binding protein)
          Length = 1268

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = +2

Query: 263 FVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           F+IGKGG  IR +R  +GAR+ +  A  DK++ +ITI   E
Sbjct: 741 FLIGKGGGKIRKVRDSTGARI-IFPAAEDKDQDLITIIGKE 780



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 266 VIGKGGVTIRSIRKESGARVDVDDAKNDKEESIIT 370
           +IGKGG  I+ IR+ES  ++D+    ++ E  IIT
Sbjct: 596 IIGKGGANIKKIREESNTKIDLPAENSNSETIIIT 630
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>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Fragment)
          Length = 474

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKN 346
           G+  L+V  P+   G +IGKGG TI  ++KE+GA + +  +K+
Sbjct: 47  GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 89



 Score = 36.2 bits (82), Expect = 0.020
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKN--DKEESIITIT 376
           +++  P    G +IGKGG T+++I ++SGA V +    +  + +E ++T++
Sbjct: 149 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVS 199



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = +2

Query: 227 LLRVACPADKIGFVIGKGGVTIRSIRKESGARVD-------VDDAKNDKEESIITITSTE 385
           ++ +A P + +G ++GKGG T+   ++ +GAR+        V   +N K    +TIT T 
Sbjct: 398 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRK----VTITGTP 453

Query: 386 A 388
           A
Sbjct: 454 A 454
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>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Ventral neuron-specific protein 1)
           (Fragment)
          Length = 493

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKN 346
           G+  L+V  P+   G +IGKGG TI  ++KE+GA + +  +K+
Sbjct: 34  GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 76



 Score = 36.2 bits (82), Expect = 0.020
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKN--DKEESIITIT 376
           +++  P    G +IGKGG T+++I ++SGA V +    +  + +E ++T++
Sbjct: 160 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVS 210



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = +2

Query: 227 LLRVACPADKIGFVIGKGGVTIRSIRKESGARVD-------VDDAKNDKEESIITITSTE 385
           ++ +A P + +G ++GKGG T+   ++ +GAR+        V   +N K    +TIT T 
Sbjct: 409 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRK----VTITGTP 464

Query: 386 A 388
           A
Sbjct: 465 A 465
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>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Onconeural ventral antigen 1)
           (Paraneoplastic Ri antigen) (Ventral neuron-specific
           protein 1)
          Length = 510

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKE 355
           G+  L+V  P+   G +IGKGG TI  ++KE+GA + +      K+
Sbjct: 48  GQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKD 93



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKN--DKEESIITIT 376
           +++  P    G +IGKGG T++++ ++SGA V +    +  + +E ++T++
Sbjct: 177 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVS 227



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
 Frame = +2

Query: 227 LLRVACPADKIGFVIGKGGVTIRSIRKESGARVD-------VDDAKNDKEESIITITSTE 385
           ++ +A P + +G ++GKGG T+   ++ +GAR+        V   +N K    +TIT T 
Sbjct: 426 VVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRK----VTITGTP 481

Query: 386 A 388
           A
Sbjct: 482 A 482
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>PNP_PSEPU (O87792) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 701

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/37 (45%), Positives = 26/37 (70%)
 Frame = +2

Query: 227 LLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDD 337
           ++ +    DKI  VIGKGG TIR+I +E+ A +D++D
Sbjct: 556 MIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIED 592
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>NU155_RAT (P37199) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)|
           (155 kDa nucleoporin) (P140)
          Length = 1390

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 5   PSELSVYPASNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFTVPTDAHGGLPIYHSMVS 184
           PS +     S +YS S     S +P+ S LG PSHG+  P  + P  A G   +  + +S
Sbjct: 590 PSNVGPILGSPMYSSSPVPTGSPYPNPSSLGTPSHGAQPPTMSTPMSAVGNPAMQAASLS 649

Query: 185 AI 190
            +
Sbjct: 650 GL 651
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>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein|
          Length = 560

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +2

Query: 221 ELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVD 334
           E+ +RV  P + +  +IG+ G  I+ +RK++GAR+DVD
Sbjct: 54  EIEMRV--PQEAVKLIIGRQGANIKQLRKQTGARIDVD 89



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVD 334
           +++ P   +G +IG+GG TIRSI K SGA++  D
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCD 161
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>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein|
          Length = 606

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 16/38 (42%), Positives = 27/38 (71%)
 Frame = +2

Query: 221 ELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVD 334
           E+ +RV  P + +  +IG+ G  I+ +RK++GAR+DVD
Sbjct: 54  EIEMRV--PQEAVKLIIGRQGANIKQLRKQTGARIDVD 89



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVD 334
           +++ P   +G +IG+GG TIRSI K SGA++  D
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCD 161
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>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/50 (34%), Positives = 34/50 (68%)
 Frame = +2

Query: 224 LLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITI 373
           L +R+     ++G +IGK G +++ +R+ESGAR+++  ++ +  E IIT+
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITL 61



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTEA 388
           P D IG +IG+ G  I  IR+ SGA++ + +      +  +TIT + A
Sbjct: 295 PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAA 342
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>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/50 (34%), Positives = 34/50 (68%)
 Frame = +2

Query: 224 LLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITI 373
           L +R+     ++G +IGK G +++ +R+ESGAR+++  ++ +  E IIT+
Sbjct: 14  LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITL 61



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTEA 388
           P D IG +IG+ G  I  IR+ SGA++ + +      +  +TIT + A
Sbjct: 292 PNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAA 339
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>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)|
          Length = 302

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           +++   A+K G VIGKGG  IR I  +   R D++D + D +E
Sbjct: 42  MQIVLKAEKPGMVIGKGGKNIRKITTQLEERFDLEDPQIDVQE 84
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>NU155_MOUSE (Q99P88) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)|
           (155 kDa nucleoporin)
          Length = 1391

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +2

Query: 5   PSELSVYPASNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFTVPTDAHGGLPIYHSMVS 184
           PS +     S +YS S     S +P+ S LG PSHG+  P  + P  A G   +  + +S
Sbjct: 591 PSNVGPILGSPMYSSSPVPSGSPYPNPSSLGTPSHGAQPPTMSTPMCAVGSPAMQAASMS 650

Query: 185 AI 190
            +
Sbjct: 651 GL 652
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>RS3_HALMA (P20281) 30S ribosomal protein S3P (HmaS3) (HS1)|
          Length = 304

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 18/42 (42%), Positives = 25/42 (59%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           ++   A+K G VIGKGG  IR I  E   R ++DD + D +E
Sbjct: 43  QIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDVQE 84
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>NU155_HUMAN (O75694) Nuclear pore complex protein Nup155 (Nucleoporin Nup155)|
           (155 kDa nucleoporin)
          Length = 1391

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 5   PSELSVYPASNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFTVPTDAHG 154
           PS +     S +YS S     S +P+ S LG PSHG   P  + P  A G
Sbjct: 591 PSNVGPILGSPVYSSSPVPSGSPYPNPSFLGTPSHGIQPPAMSTPVCALG 640
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>PNP_ECOLI (P05055) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 711

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 251 DKIGFVIGKGGVTIRSIRKESGARVDVDD 337
           DKI  VIGKGG  IR++ +E+G  ++++D
Sbjct: 563 DKIKDVIGKGGSVIRALTEETGTTIEIED 591
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>PNP_PHOLU (P41121) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (CAP87K)
          Length = 709

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 14/29 (48%), Positives = 22/29 (75%)
 Frame = +2

Query: 251 DKIGFVIGKGGVTIRSIRKESGARVDVDD 337
           DKI  VIGKGG  IR++ +E+G  ++++D
Sbjct: 563 DKIKDVIGKGGSVIRALTEETGTTIEIED 591
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>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (p75)
          Length = 707

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 236 VACPADKIGFVIGKGGVTIRSIRKESGARV 325
           +  PA K G VIGKGG TI+ +++ +G ++
Sbjct: 238 IMIPAGKAGLVIGKGGETIKQLQERAGVKM 267



 Score = 33.5 bits (75), Expect = 0.13
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 191 PTYNAPKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIIT 370
           P +  P+ S     RV  P   +G +IG+GG  I  I+++SG +V +        E  ++
Sbjct: 136 PIHPPPRTSMTEEYRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVS 193

Query: 371 IT 376
           +T
Sbjct: 194 LT 195



 Score = 32.7 bits (73), Expect = 0.22
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDV 331
           GE+   +  P  K G VIG+GG  +++I +++GA V++
Sbjct: 423 GEMTFSI--PTHKCGLVIGRGGENVKAINQQTGAFVEI 458
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>MTPC1_ARATH (Q8L725) Metal tolerance protein C1 (AtMTPc1)|
          Length = 471

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 26/82 (31%), Positives = 33/82 (40%)
 Frame = +2

Query: 32  SNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFTVPTDAHGGLPIYHSMVSAIPTYNAPK 211
           S +Y +S   +PS   S S L   S  S  P F      H G P +H        Y  P 
Sbjct: 17  STIYYMSCRYLPSSSSSSSPLRVSSSSSQKPSFDFSRRWHFGHPDHHQQ------YQKPG 70

Query: 212 CSGELLLRVACPADKIGFVIGK 277
             GE + R+   AD IG  + K
Sbjct: 71  EEGEKIFRLGLTAD-IGLSVAK 91
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>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 236 VACPADKIGFVIGKGGVTIRSIRKESGARV 325
           +  PA K G VIGKGG TI+ +++ +G ++
Sbjct: 239 IMIPAGKAGLVIGKGGETIKQLQERAGVKM 268



 Score = 33.5 bits (75), Expect = 0.13
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +2

Query: 191 PTYNAPKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIIT 370
           P +  P+ S     RV  P   +G +IG+GG  I  I+++SG +V +        E  ++
Sbjct: 137 PIHPPPRTSMTEEYRV--PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVS 194

Query: 371 IT 376
           +T
Sbjct: 195 LT 196



 Score = 32.7 bits (73), Expect = 0.22
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDV 331
           GE+   +  P  K G VIG+GG  +++I +++GA V++
Sbjct: 426 GEMTFSI--PTHKCGLVIGRGGENVKAINQQTGAFVEI 461
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>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 236 VACPADKIGFVIGKGGVTIRSIRKESGARV 325
           +  PA K G VIGKGG TI+ +++ +G ++
Sbjct: 301 IMIPAGKAGLVIGKGGETIKQLQERAGVKM 330



 Score = 33.1 bits (74), Expect = 0.17
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITST 382
           P   +G +IG+GG  I  I+++SG +V +        E  +++T +
Sbjct: 216 PDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGS 261



 Score = 32.0 bits (71), Expect = 0.37
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 218 GELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDV 331
           GE+   +  P  K G VIG+GG  +++I ++ GA V++
Sbjct: 487 GEMTFSI--PTHKCGLVIGRGGENVKAINQQRGAFVEI 522
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>PNP_BUCBP (Q89AF8) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 693

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 251 DKIGFVIGKGGVTIRSIRKESGARVDVDD 337
           +KI  VIGKGG  IR + +E+G  ++++D
Sbjct: 563 EKIKDVIGKGGSVIRMLTEETGTTIEIED 591
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>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 251 DKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESII 367
           +KI  VIGKGG  IR + +E+G  ++++D    K  S +
Sbjct: 563 EKIKDVIGKGGSVIRMLTEETGTIIEIEDDGTVKISSTV 601
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>Y443_METJA (Q57885) Hypothetical protein MJ0443|
          Length = 227

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVDVD 334
           P D++G +IGK G   ++I KE G ++++D
Sbjct: 22  PKDRVGVLIGKKGNVKKTIEKELGVKLEID 51
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>FXR2_HUMAN (P51116) Fragile X mental retardation syndrome-related protein 2|
          Length = 673

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +2

Query: 236 VACPADKIGFVIGKGGVTIRSIRKESG---ARVDVD-DAKNDKEESII 367
           V  P + +G VIGK G  I+ I  +SG    RV+ D D KN +EE ++
Sbjct: 296 VQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRVEGDNDKKNPREEGMV 343
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>PNP_BUCAP (Q8K9H5) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +2

Query: 251 DKIGFVIGKGGVTIRSIRKESGARVDVDD 337
           +KI  VIGKGG  IR + +E+G  ++++D
Sbjct: 563 EKIKDVIGKGGSVIRMLTEETGTIIEIED 591
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>PNP_YEREN (O34275) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 706

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 251 DKIGFVIGKGGVTIRSIRKESGARVDVD 334
           +KI  VIGKGG  IR++  E+G  +D++
Sbjct: 563 EKIKDVIGKGGSVIRALTDETGTTIDIE 590
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>PBP2_YEAST (P38151) PAB1-binding protein 2|
          Length = 413

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITST 382
           LR+ C       ++G  G TI  I+ E+ AR+++ +      E I+ +  T
Sbjct: 69  LRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYVRGT 119
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>Y1533_METJA (Q58928) Hypothetical protein MJ1533|
          Length = 642

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +2

Query: 209 KCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESI 364
           K +G+  + +  P   IG +IGKGG  I  +    G ++ V + + ++E+ +
Sbjct: 506 KVTGDNSIDLIVPEKYIGAIIGKGGKEISKLEDMLGLKISVKEKEKEEEKDM 557
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>SC160_YEAST (P06105) Protein SCP160 (Protein HX)|
          Length = 1222

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
 Frame = +2

Query: 47  VSDASMPSGHPSLSILGAPSHGSHVPE---FTVPTD---AHGGLPIYHSMVSAIPTYNAP 208
           + D S   GH  + +        H PE    TV  D   A     I+ S++      N+P
Sbjct: 586 MEDISEQEGHLQIKL--------HTPEENQLTVRGDEKAAKAANKIFESIL------NSP 631

Query: 209 KCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKND---KEESI-ITIT 376
               ++ + +  PA+ +  +IG  G  ++ IR++   ++D+ + +N+   K++++ +T+T
Sbjct: 632 SSKSKMTVNI--PANSVARLIGNKGSNLQQIREKFACQIDIPNEENNNASKDKTVEVTLT 689

Query: 377 STE 385
             E
Sbjct: 690 GLE 692



 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 245 PADKIGFVIGKGGVTIRSIRKESGARVD 328
           PA+ +  +IGK G  I  IR E G  +D
Sbjct: 790 PAEHVPRIIGKNGDNINDIRAEYGVEMD 817
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>PNP_BACSU (P50849) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase) (Vegetative
           protein 15) (VEG15)
          Length = 704

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = +2

Query: 152 GGLPIYHSMVSAIPTYN------APKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKES 313
           G + I +SM++ +          APK     +L +    DKI  VIG  G  I  I +E+
Sbjct: 529 GRMEILNSMLATLSESRKELSRYAPK-----ILTMTINPDKIRDVIGPSGKQINKIIEET 583

Query: 314 GARVDVDDAKNDKEESIITITSTE 385
           G ++D++      ++  I I+ST+
Sbjct: 584 GVKIDIE------QDGTIFISSTD 601
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>PNP_RICPR (Q9ZD43) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 745

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 251 DKIGFVIGKGGVTIRSIRKESGARVDVDD 337
           DKI  +IG GG  I+ I + S A++D+ D
Sbjct: 564 DKIKDIIGPGGKIIKEICETSNAKIDISD 592
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>SYA_CHLTE (Q8KG04) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 885

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +2

Query: 170 HSMVSAIPTYNAPKCSGELLLRVACPADKIGFVIGKGG-VTIRSIRKESGARVDVDDAKN 346
           + M+    T  A + SG+ LL V    D+  F    GG V      + +G R+DV D + 
Sbjct: 463 YDMLETEATLVAARVSGDKLLMVL---DQTPFYAESGGQVGDHGTLETAGYRLDVTDTRK 519

Query: 347 DKEESIITITS 379
           D E+ +  +TS
Sbjct: 520 DGEQIVHVVTS 530
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>RS3_NATPD (Q3IMY2) 30S ribosomal protein S3P|
          Length = 305

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           ++   A+K G VIGKGG  IR I         ++D + D +E
Sbjct: 43  QIVLKAEKPGMVIGKGGKNIRKITTTLEEEFGLEDPQVDVQE 84
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>FXR2_MOUSE (Q9WVR4) Fragile X mental retardation syndrome-related protein 2|
          Length = 673

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 236 VACPADKIGFVIGKGGVTIRSIRKESG---ARVDVD-DAKNDKEESII 367
           V  P D +G V GK G  I+ I  +SG    RV+ D D KN KE  ++
Sbjct: 296 VQVPRDLVGKVTGKTGKVIQGIVDKSGVVRVRVEGDNDKKNPKEGGMV 343
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>RS3_METTH (O26116) 30S ribosomal protein S3P|
          Length = 258

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = +2

Query: 248 ADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           A++ G VIG+GG T+R+I ++   + D+++ + + +E
Sbjct: 47  AERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEVKE 83
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>FMR1_XENLA (P51113) Fragile X mental retardation protein 1 homolog (Protein|
           FMR-1) (FMRP)
          Length = 564

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
 Frame = +2

Query: 236 VACPADKIGFVIGKGGVTIRSIRKESG---ARVDVDDAKN-DKEESII 367
           +  P + +G VIGK G  I+ I  +SG    R++ ++ KN  +EE I+
Sbjct: 286 IQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENDKNISQEEGIV 333
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>FMR1_HUMAN (Q06787) Fragile X mental retardation 1 protein (Protein FMR-1)|
           (FMRP)
          Length = 632

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 236 VACPADKIGFVIGKGGVTIRSIRKESG---ARVDVDDAKNDKEESII 367
           +  P + +G VIGK G  I+ I  +SG    R++ ++ KN  +E  I
Sbjct: 286 IQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEI 332
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>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 233 RVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           +   P+ K   V+GKG    ++ +KE     D DD  ++++E
Sbjct: 89  KAVAPSPKKAAVVGKGAKNGKNAKKEESEEEDEDDEDDEEDE 130
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>RS3_CAMJR (Q5HS96) 30S ribosomal protein S3|
          Length = 233

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           LRV   A + G +IGK G  + ++RKE    +  D   N KEE
Sbjct: 64  LRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNINIKEE 106
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>RS3_CAMJE (Q9PLX7) 30S ribosomal protein S3|
          Length = 233

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           LRV   A + G +IGK G  + ++RKE    +  D   N KEE
Sbjct: 64  LRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNINIKEE 106
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>MTH5_DROME (Q9VGG8) Probable G-protein coupled receptor Mth-like 5 (Protein|
           methuselah-like 5)
          Length = 496

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 300 ILLMVTPPLPITNPILSAGHATRSNSSP 217
           +LL+   PLP+T+ + SAG +T  +S P
Sbjct: 31  VLLLSLNPLPVTSHVTSAGSSTALSSDP 58
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>NUSA_METJA (Q58447) NusA protein homolog|
          Length = 183

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +2

Query: 257 IGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITI 373
           +G  IGKGG  +++  ++ G +VD+ +  +D  + I  I
Sbjct: 44  VGAAIGKGGENVKTAEEKFGKKVDIIEYSDDWRKFIRNI 82
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>Y1473_CAUCR (P58113) Hypothetical protein CC1473|
          Length = 232

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 251 DKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTE 385
           D+ G+++   GV      + +G R++  D    K+E++ITIT+ E
Sbjct: 183 DRSGYLVPAAGVV-----EVNGVRLNARDGAGIKDEAVITITALE 222
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>BRO1_CANGA (Q6FJG8) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 888

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 17  SVYPASNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFTVPTDAHGGLPIYHSMVSAIPT 196
           S + + NL SV         P+ +     S  ++  +F+VP  AHG LP  ++ V  +PT
Sbjct: 742 SQFQSMNLGSVPTPQRFPQPPAPNSRPIVSMENYTSQFSVPP-AHGDLPPAYNQVPLVPT 800

Query: 197 --YNAPKCSG 220
             Y+ P  SG
Sbjct: 801 RNYDQPHGSG 810
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>P2RX1_MOUSE (P51576) P2X purinoceptor 1 (ATP receptor) (P2X1) (Purinergic|
           receptor)
          Length = 399

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 209 KCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESG 316
           KC    +L   CP   +G+V+ + G   RS+ ++ G
Sbjct: 216 KCLYHKILHPLCPVFSLGYVVRESGQDFRSLAEKGG 251
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>CBIX_SYNY3 (Q55451) Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) (CbiXL)|
          Length = 336

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 282 PPLPITNPILSAGHATRSNSSPEHF 208
           PPLP   P+L  GH TR     + F
Sbjct: 19  PPLPYHRPLLMIGHGTRDEDGRQTF 43
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>Y2058_BRAJA (Q9AMW4) Putative cysteine protease yopT-like blr2058 (EC 3.4.22.-)|
          Length = 298

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +2

Query: 20  VYPASNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFTVPTDAHGGLPIYHSMVSAIPTY 199
           V P +  ++++ A+        +IL  P++G    EFTVP+D  GGL  + S+     T 
Sbjct: 216 VQPGAGTHTIATATSNG----TTILSDPNYG----EFTVPSDRVGGL--FKSLAERYSTL 265

Query: 200 NAPKCSGELLLRV 238
           N    S  +  R+
Sbjct: 266 NKRDISAVVTQRI 278
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>Y1857_THEMA (Q9X2H2) UPF0144 protein TM1857|
          Length = 508

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 203 APKCSGELLLR-VACPADKI-GFVIGKGGVTIRSIRKESGARVDVDD 337
           AP   GE+ +  V+ P+D + G +IG+ G  IR+  K +G  + +DD
Sbjct: 190 APDYVGEITVSTVSLPSDDMKGRIIGREGRNIRTFEKITGVDLIIDD 236
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>ZHX3_RAT (Q80Z36) Zinc finger and homeobox protein 3 (Fragment)|
          Length = 522

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 62  MPSGHPSLSILGAPS-HGSHVPEFTVPTDAHGGLPIYHSMVSAIPTYNAPKCSGELL 229
           +P+G      L  P+ H  H P   +PT     LP     +S+IPTYNA   S   L
Sbjct: 146 LPAGIAQFLSLQQPTVHPQHHPHQPLPTSK--ALPKVMIPLSSIPTYNAAMDSNSFL 200
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>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 32  SNLYSVSDASMPSGHPSL-SILGAPSHGSHVPEFTVPTDAHGGLPIYHSMVSAIPTYNAP 208
           S L S ++ ++PS    L S +  P+    +P+ T P D++ GLP    +  AIP    P
Sbjct: 437 SMLNSHTEEALPSASNMLHSQVTVPAQPGSLPDLTRPQDSYSGLP---GLGRAIPPGRVP 493

Query: 209 KCSGE 223
               E
Sbjct: 494 DIKRE 498
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>HISX_METTH (O26327) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 426

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
 Frame = +2

Query: 2   LPSELSVYPASNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFT-VPTDAHGGLPIYHSM 178
           +P   +VYP++ L +V  A + +G   +     P+    VP+   V  D  G   IY   
Sbjct: 126 IPGGRAVYPSTILMTVIPARI-AGVERIVCCTPPAQDGSVPDAVLVAADMAGASEIYR-- 182

Query: 179 VSAIPTYNAPKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           V       A     E +     P DKI   +G G + + + +K     VD+D      E 
Sbjct: 183 VGGAQAVAAMAYGTETIR----PVDKI---VGPGNIFVTAAKKLVYGEVDIDFPAGPSEV 235

Query: 359 SII 367
            II
Sbjct: 236 LII 238
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>RS3_LACJO (Q74L83) 30S ribosomal protein S3|
          Length = 222

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGA 319
           + ++    K G VIGKGG  + ++RKE  A
Sbjct: 63  INISIHTAKPGMVIGKGGKEVEALRKELSA 92
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>RS3_ENTFA (Q839F8) 30S ribosomal protein S3|
          Length = 218

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
 Frame = +2

Query: 254 KIGFVIGKGGVTIRSIRKE----SGARVDVD 334
           K G VIGKGG  + ++RKE    +G RV ++
Sbjct: 71  KPGMVIGKGGSEVENLRKELNKLTGKRVHIN 101
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>RS3_LACPL (Q88XY0) 30S ribosomal protein S3|
          Length = 217

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
 Frame = +2

Query: 254 KIGFVIGKGGVTIRSIRKE----SGARVDVD 334
           K G VIGKGG  + ++RKE    +G RV ++
Sbjct: 71  KPGMVIGKGGSEVEALRKELNNLTGKRVHIN 101
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>DDX43_HUMAN (Q9NXZ2) Probable ATP-dependent RNA helicase DDX43 (EC 3.6.1.-)|
           (DEAD box protein 43) (DEAD box protein HAGE) (Helical
           antigen)
          Length = 648

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +2

Query: 221 ELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEESIITITSTEA 388
           EL L  A  +  +G VIG+GG  I++I+  +   + +     ++ ES++ I  ++A
Sbjct: 67  ELPLCFALKSHFVGAVIGRGGSKIKNIQSTTNTTIQI---IQEQPESLVKIFGSKA 119
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>YKR1_CAEEL (P34307) Hypothetical protein C06G4.1 in chromosome III|
          Length = 886

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = +2

Query: 179 VSAIPTYNAPKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAKNDKEE 358
           +  I   N P      + +V  P + +  +IG+ GV I  IR ES A+  ++  + + ++
Sbjct: 761 IEEITHENQPADDDPGIFQVRVPENMVARLIGRHGVEINRIRSESKAKCYLNAIRGNLDD 820

Query: 359 SII 367
             +
Sbjct: 821 KFM 823
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>K0056_MOUSE (Q6ZQK0) Protein KIAA0056|
          Length = 1506

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 86  SILGAPSHGSHVPEFTVPTDAHGGLPIYHSMVSAIPT 196
           SIL + +H  H+P     TDA    P +    SA+P+
Sbjct: 876 SILASSAHSDHLPSSQGTTDALDSQPPFQPRSSAMPS 912
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>DLD_ECOLI (P06149) D-lactate dehydrogenase (EC 1.1.1.28) (Respiratory|
           D-lactate dehydrogenase)
          Length = 570

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 11  ELSVYPASNLYSVSDASMPSGHPSLSILGAPSHGSHV 121
           ++  YP + LYS+  A  P G    S++G+   G+ V
Sbjct: 114 QVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASV 150
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>VILD_DICDI (Q8WQ85) Villidin|
          Length = 1704

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = +2

Query: 5   PSELSVYPASNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFTVPTDAHGGLPIYHSMVS 184
           PS + +    N         P         G+ S  S  P+ + PT        +HS++S
Sbjct: 590 PSPMVISENKNALQKFSVPSPKEQQQQQQQGSESPNSTTPKSSTPTQTR-----HHSVLS 644

Query: 185 AIPTYNAPKCSG 220
             P+Y + K SG
Sbjct: 645 RNPSYTSLKSSG 656
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>GTSE1_MOUSE (Q8R080) G2 and S phase expressed protein 1 (Gtse-1) (B99 protein)|
          Length = 741

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 17  SVYPASNLYSVSDASMPSGHPSLSILGAPSHGSHVPEFTVPTDAHGG 157
           SV  A N      AS P   P  S  GA    +  PE T+P++ HGG
Sbjct: 591 SVPQALNFSPEKSASPP---PQGSSTGAAQGEAEPPEDTLPSEVHGG 634
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>RS3_STAAW (P66554) 30S ribosomal protein S3|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVD 328
           + +A    K G VIGKGG  I  +R +  A  D
Sbjct: 63  INIAIHTGKPGMVIGKGGSEIEKLRNKLNALTD 95
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>RS3_STAAS (Q6G777) 30S ribosomal protein S3|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVD 328
           + +A    K G VIGKGG  I  +R +  A  D
Sbjct: 63  INIAIHTGKPGMVIGKGGSEIEKLRNKLNALTD 95
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>RS3_STAAR (Q6GEI9) 30S ribosomal protein S3|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVD 328
           + +A    K G VIGKGG  I  +R +  A  D
Sbjct: 63  INIAIHTGKPGMVIGKGGSEIEKLRNKLNALTD 95
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>RS3_STAAN (P66553) 30S ribosomal protein S3|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVD 328
           + +A    K G VIGKGG  I  +R +  A  D
Sbjct: 63  INIAIHTGKPGMVIGKGGSEIEKLRNKLNALTD 95
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>RS3_STAAM (P66552) 30S ribosomal protein S3|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVD 328
           + +A    K G VIGKGG  I  +R +  A  D
Sbjct: 63  INIAIHTGKPGMVIGKGGSEIEKLRNKLNALTD 95
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>RS3_STAAC (Q5HDW4) 30S ribosomal protein S3|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVD 328
           + +A    K G VIGKGG  I  +R +  A  D
Sbjct: 63  INIAIHTGKPGMVIGKGGSEIEKLRNKLNALTD 95
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>RS3_STAAB (Q2YYQ2) 30S ribosomal protein S3|
          Length = 217

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 230 LRVACPADKIGFVIGKGGVTIRSIRKESGARVD 328
           + +A    K G VIGKGG  I  +R +  A  D
Sbjct: 63  INIAIHTGKPGMVIGKGGSEIEKLRNKLNALTD 95
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>RS3_HELPJ (Q9ZJR9) 30S ribosomal protein S3|
          Length = 234

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +2

Query: 164 IYHSMVSAIPTYNAPKCSGELLLRVACPADKIGFVIGKGGVTIRSIRKESGARVDVDDAK 343
           +Y++ VS I    A K      LRV   A + G +IGK GV I  +++     +  + + 
Sbjct: 47  LYYAGVSEIVIERAAK-----KLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSI 101

Query: 344 NDKE 355
           N KE
Sbjct: 102 NIKE 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,083,427
Number of Sequences: 219361
Number of extensions: 1084499
Number of successful extensions: 2999
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 2893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2998
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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