ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet06f03 |
|---|---|
| Clone Library Name | barley_pub |
>NPH3_ORYSA (Q5KS50) Coleoptile phototropism protein 1 (Non-phototropic| hypocotyl 3-like protein) (NPH3-like protein) Length = 762 Score = 87.8 bits (216), Expect = 1e-17 Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 25/159 (15%) Frame = +1 Query: 4 VVLRSWKDSLEALKTCDVLLPHAEDLHIAKRCVESLAAKASIDPDLFGWPVSEHG----- 168 VVL SW+DS+ LK+C+ L P AE+L I +RC ES+A KA +P W + G Sbjct: 163 VVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGAGSGG 222 Query: 169 ------AMHSPGG-----SVLWNGISTGAKLGNFSS---------DWWYDDASSLSFPTY 288 A+ GG S WN G SS DWW++D S L + Sbjct: 223 ARGGPAAIRGGGGSGGTASPRWNVGGGGGGESKESSPSRQAVPPADWWFEDVSVLRIDHF 282 Query: 289 KRLISTMESRGAKEEIVAGSLTYYAKKCLPGLNRRQSMG 405 R+++ ++ +G + +++ ++T+YA K LPGL + +G Sbjct: 283 VRVVTAIKVKGMRFDLIGAAITHYASKWLPGLTKDAPLG 321
>RPT3_ARATH (Q9FMF5) Root phototropism protein 3 (Non-phototropic hypocotyl| protein 3) Length = 745 Score = 87.0 bits (214), Expect = 2e-17 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 15/157 (9%) Frame = +1 Query: 4 VVLRSWKDSLEALKTCDVLLPHAEDLHIAKRCVESLAAKASIDPDLFGWPVSEHGAMHSP 183 VVL SW+DS+ LK+C+ L P AE+L I +RC ES+A KA +P W + G SP Sbjct: 156 VVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACSNPKGIRWAYT--GKAPSP 213 Query: 184 ------GGSVLWN---------GISTGAKLGNFSSDWWYDDASSLSFPTYKRLISTMESR 318 G S WN S DWW++D S L + R+I+ ++ + Sbjct: 214 STTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAIKVK 273 Query: 319 GAKEEIVAGSLTYYAKKCLPGLNRRQSMGLVPLIXAA 429 G + E++ + +YA K LPGL + + + P + +A Sbjct: 274 GMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSA 310
>RPT2_ARATH (Q682S0) Root phototropism protein 2| Length = 593 Score = 51.6 bits (122), Expect = 9e-07 Identities = 35/133 (26%), Positives = 58/133 (43%) Frame = +1 Query: 1 QVVLRSWKDSLEALKTCDVLLPHAEDLHIAKRCVESLAAKASIDPDLFGWPVSEHGAMHS 180 QV L S ++ LK+C++LLP + DL I +RCV+ + AKA + + Sbjct: 134 QVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAKACNEAMF---------PCRT 184 Query: 181 PGGSVLWNGISTGAKLGNFSSDWWYDDASSLSFPTYKRLISTMESRGAKEEIVAGSLTYY 360 P +WW ++ L + ++S+M+ RG K +A ++ Y Sbjct: 185 P-------------------PNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITY 225 Query: 361 AKKCLPGLNRRQS 399 +K L L R S Sbjct: 226 TEKSLRDLVRDHS 238
>DNE23_AGRT5 (Q8U642) Error-prone DNA polymerase 3 (EC 2.7.7.7)| Length = 1087 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/65 (27%), Positives = 27/65 (41%) Frame = +2 Query: 74 KTFTLRRGASSRWLPRLASIQTSLAGQYQSTVRCIAPGAVCCGMVLAQALSSGTSAQIGG 253 KTF+ G S P + +L S ++C P A C ++ +Q + AQI G Sbjct: 702 KTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHYPEAFCAALINSQPMGFYAPAQIVG 761 Query: 254 MMMLH 268 H Sbjct: 762 DARAH 766
>LOK_DROME (O61267) Ovarian-specific serine/threonine-protein kinase Lok (EC| 2.7.11.1) (Protein loki) (dMNK) Length = 476 Score = 30.0 bits (66), Expect = 2.7 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +1 Query: 256 DDASSLSFPTYKRLI----STMESRGAKEEIVAGSLTYYAKKCLPGLNRRQSMGLVPLIX 423 DD SLS PTYK + S ES G EEI + TYY + L + GLV L+ Sbjct: 140 DDVISLSHPTYKAFVFKDLSPNESIGLPEEI---NKTYYVNRKLGS----GAYGLVRLVY 192 Query: 424 AAATLSE 444 T + Sbjct: 193 DTRTCQQ 199
>MAD_DROME (P42003) Protein mothers against dpp| Length = 455 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -3 Query: 254 YHQSELKFPSLAPVLIPFHNTLPPGLCIAPCSDTGQP 144 YH ++ P L PVL+P H+ PG + + +P Sbjct: 139 YHYKRVESPVLPPVLVPRHSEFAPGHSMLQFNHVAEP 175
>M3K3_ARATH (O22042) Mitogen-activated protein kinase kinase kinase 3 (EC| 2.7.11.25) (Arabidospsis NPK1-related protein kinase 3) Length = 651 Score = 29.6 bits (65), Expect = 3.5 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 24/124 (19%) Frame = -3 Query: 302 EISLLYVGKLNDEASSYHQSELKFPSL------------APVLIPFHNTLPPGLCIAPCS 159 E SL + G + Y +ELK S P+L FHN + PG+ Sbjct: 482 ETSLTFAGGSSVAEDDYKGTELKIKSFLDEKAQDLKRLQTPLLEEFHNAMNPGIPQGALG 541 Query: 158 DTG------------QPKRSGSMLALAANDSTHLFAM*RSSA*GRRTSHVLSASRESFQL 15 DT PKR S A +D+ + + +SS TS V+ + E Q+ Sbjct: 542 DTNIYNLPNLPSISKTPKRLPSRRLSAISDA--MPSPLKSSKRTLNTSRVMQSGTEPTQV 599 Query: 14 RRTT 3 +T Sbjct: 600 NEST 603
>CLAP2_RAT (Q99JD4) CLIP-associating protein 2 (Cytoplasmic linker-associated| protein 2) Length = 1286 Score = 29.6 bits (65), Expect = 3.5 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Frame = +2 Query: 134 QTSLAGQYQSTVRCIAPGAVCCGMVLAQALSSGTSAQIGGMMMLHH*ASLHTRGLSPL-- 307 +T + Q Q R +PG V + ALS+ +S G +L + AS R P Sbjct: 454 RTKMVSQSQPGSRSGSPGRV----LTTTALSTVSS---GAQRILVNSASAQKRSKIPRSQ 506 Query: 308 -WSQEAPRRRLSPVRSHTMPR-SVSQG 382 S+EA RLS RS +PR SVSQG Sbjct: 507 GCSREASPSRLSVARSSRIPRPSVSQG 533
>CLAP2_MOUSE (Q8BRT1) CLIP-associating protein 2 (Cytoplasmic linker-associated| protein 2) Length = 1286 Score = 29.6 bits (65), Expect = 3.5 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Frame = +2 Query: 134 QTSLAGQYQSTVRCIAPGAVCCGMVLAQALSSGTSAQIGGMMMLHH*ASLHTRGLSPL-- 307 +T + Q Q R +PG V + ALS+ +S G +L + AS R P Sbjct: 454 RTKMVSQSQPGSRSGSPGRV----LTTTALSTVSS---GAQRVLVNSASAQKRSKIPRSQ 506 Query: 308 -WSQEAPRRRLSPVRSHTMPR-SVSQG 382 S+EA RLS RS +PR SVSQG Sbjct: 507 GCSREASPSRLSVARSSRIPRPSVSQG 533
>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6| Length = 880 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = +1 Query: 1 QVVLRSWKDSLEALKTCDVLLPHAEDLHIAKRCVESLA---AKASIDPDLFGWPVSEHGA 171 Q L+S+ + E L+ + AED H +++LA + ++ P HG+ Sbjct: 97 QKSLQSFLKTAEVLRVSGLTQQQAEDTHSHLAQIQNLANSGGRTPLNTHTQSLPHPHHGS 156 Query: 172 MHSPGGS 192 +H GGS Sbjct: 157 LHDDGGS 163
>BRC1_DROME (Q01295) Broad-complex core-protein isoforms 1/2/3/4/5| Length = 727 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = +1 Query: 1 QVVLRSWKDSLEALKTCDVLLPHAEDLHIAKRCVESLA---AKASIDPDLFGWPVSEHGA 171 Q L+S+ + E L+ + AED H +++LA + ++ P HG+ Sbjct: 97 QKSLQSFLKTAEVLRVSGLTQQQAEDTHSHLAQIQNLANSGGRTPLNTHTQSLPHPHHGS 156 Query: 172 MHSPGGS 192 +H GGS Sbjct: 157 LHDDGGS 163
>CN159_MOUSE (Q8BH86) Protein C14orf159 homolog, mitochondrial precursor| Length = 617 Score = 28.9 bits (63), Expect = 6.0 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +2 Query: 77 TFTLRRGASSRWLPRLASIQTSLAGQYQSTVRCIAPGAVCCGMVL 211 +F++ +PR S AG Y++TV C CC +V+ Sbjct: 122 SFSIEEALEQAGIPRRDLTGPSHAGAYKTTVPCATIAGFCCPLVV 166
>CLAP2_HUMAN (O75122) CLIP-associating protein 2 (Cytoplasmic linker-associated| protein 2) Length = 1294 Score = 28.5 bits (62), Expect = 7.9 Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Frame = +2 Query: 134 QTSLAGQYQSTVRCIAPGAVCCGMVLAQALSSGTSAQIGGMMMLHH*ASLHTRGLSPL-- 307 +T + Q Q R +PG V + ALS+ +S G +L + AS R P Sbjct: 448 RTKMVSQSQPGSRSGSPGRV----LTTTALSTVSS---GVQRVLVNSASAQKRSKIPRSQ 500 Query: 308 -WSQEAPRRRLSPVRSHTMPR-SVSQG 382 S+EA RLS RS +PR SVSQG Sbjct: 501 GCSREASPSRLSVARSSRIPRPSVSQG 527
>SMAD5_RAT (Q9R1V3) Mothers against decapentaplegic homolog 5 (SMAD 5)| (Mothers against DPP homolog 5) (Smad5) Length = 465 Score = 28.5 bits (62), Expect = 7.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -3 Query: 254 YHQSELKFPSLAPVLIPFHNTLPP 183 YH ++ P L PVL+P HN P Sbjct: 126 YHYKRVESPVLPPVLVPRHNEFNP 149
>SMAD5_MOUSE (P97454) Mothers against decapentaplegic homolog 5 (SMAD 5)| (Mothers against DPP homolog 5) (Smad5) (mSmad5) (Dwarfin-C) (Dwf-C) Length = 465 Score = 28.5 bits (62), Expect = 7.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -3 Query: 254 YHQSELKFPSLAPVLIPFHNTLPP 183 YH ++ P L PVL+P HN P Sbjct: 126 YHYKRVESPVLPPVLVPRHNEFNP 149
>SMAD5_HUMAN (Q99717) Mothers against decapentaplegic homolog 5 (SMAD 5)| (Mothers against DPP homolog 5) (Smad5) (hSmad5) (JV5-1) Length = 465 Score = 28.5 bits (62), Expect = 7.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -3 Query: 254 YHQSELKFPSLAPVLIPFHNTLPP 183 YH ++ P L PVL+P HN P Sbjct: 126 YHYKRVESPVLPPVLVPRHNEFNP 149
>GLPK_BORPE (Q7VSU7) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 508 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 151 ASQRGLDRC*PWQPTTRRTSSQCEGLRHEGEG 56 A+ R L R WQ RRT++ CE L H+G G Sbjct: 93 ATGRPLARAIVWQD--RRTAAMCEKLLHDGHG 122
>GLPK_BORPA (Q7W3R1) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 508 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 151 ASQRGLDRC*PWQPTTRRTSSQCEGLRHEGEG 56 A+ R L R WQ RRT++ CE L H+G G Sbjct: 93 ATGRPLARAIVWQD--RRTAAMCEKLLHDGHG 122
>GLPK_BORBR (Q7WF38) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 508 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -1 Query: 151 ASQRGLDRC*PWQPTTRRTSSQCEGLRHEGEG 56 A+ R L R WQ RRT++ CE L H+G G Sbjct: 93 ATGRPLARAIVWQD--RRTAAMCEKLLHDGHG 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.132 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,503,987 Number of Sequences: 219361 Number of extensions: 1450717 Number of successful extensions: 5875 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4455 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5869 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
