ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet06f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 337 2e-89
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 337 2e-89
3emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327... 337 2e-89
4gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic seque... 86 1e-13
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 86 1e-13
6emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0... 86 1e-13
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
8gb|AY111357.1| Zea mays CL11582_1 mRNA sequence 60 6e-06
9ref|XM_479933.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
10gb|AC104411.5| Homo sapiens 3 BAC RP11-555M1 (Roswell Park Cance... 42 1.5
11ref|NM_064640.2| Caenorhabditis elegans C38C6.3 (C38C6.3) mRNA, ... 42 1.5
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
13dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AK100956.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
16gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, com... 40 6.0
17gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.0
18gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retro... 40 6.0
19ref|XM_751648.1| Ustilago maydis 521 hypothetical protein (UM005... 40 6.0
20gb|AC074132.5| Homo sapiens chromosome 5 clone CTD-2266L18, comp... 40 6.0
21dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
22gb|AC079807.5| Homo sapiens BAC clone RP11-760G15 from 2, comple... 40 6.0
23gb|AY819983.1| Aspergillus auricomus strain CBS 61378 beta-tubul... 40 6.0
24gb|AY819982.1| Aspergillus auricomus strain CBS 46765 beta-tubul... 40 6.0
25dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
26dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
27gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 40 6.0
28gb|AC159013.2| Gallus gallus BAC clone CH261-33A3 from chromosom... 40 6.0
29gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromos... 40 6.0

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  337 bits (170), Expect = 2e-89
 Identities = 341/398 (85%)
 Strand = Plus / Minus

                                                                            
Query: 1        caagtagttctccgcagctggaaagattccctggaagcactcaagacatgtgatgtcctt 60
                |||||||| ||||| ||||||||||||||||||||||| ||   ||||||||||| ||||
Sbjct: 26013764 caagtagtcctccgaagctggaaagattccctggaagcgcttcggacatgtgatggcctt 26013705

                                                                            
Query: 61       ctccctcatgccgaagaccttcacattgcgaagaggtgcgtcgagtcgttggctgccaag 120
                ||||||||||| |||||||||||||||| |||||| ||| |||| || ||||||| ||| 
Sbjct: 26013704 ctccctcatgctgaagaccttcacattgtgaagagatgcatcgaatcattggctggcaaa 26013645

                                                                            
Query: 121      gctagcatcgatccagacctctttggctggccagtatcagagcacggtgcgatgcatagc 180
                |||||||||||||| |||||||| ||||||||||| || || ||  || | ||||| |||
Sbjct: 26013644 gctagcatcgatccggacctcttcggctggccagtctcggaacatagtaccatgcaaagc 26013585

                                                                            
Query: 181      cccgggggcagtgtgttgtggaatggtattagcacaggcgctaagctcgggaacttcagc 240
                |||||||| ||||| ||||||||||| || ||||| || || ||| |  |||||| ||| 
Sbjct: 26013584 cccgggggaagtgtcttgtggaatggcataagcacgggtgcgaaggttaggaactgcagt 26013525

                                                                            
Query: 241      tcagattggtggtatgatgatgcttcatcattgagcttccctacatacaagaggcttatc 300
                || || |||||||||||||||||||| ||  |||||||||||||||||||||||||||| 
Sbjct: 26013524 tcggactggtggtatgatgatgcttcctccctgagcttccctacatacaagaggcttatt 26013465

                                                                            
Query: 301      tccactatggagtcaagaggcgccaaggaggagattgtcgccggttcgctcacatactat 360
                ||  | |||||||||||||||  |||  |||||||  | || ||||||||||||||||| 
Sbjct: 26013464 tcttccatggagtcaagaggcatcaaacaggagatcattgcgggttcgctcacatactac 26013405

                                                      
Query: 361      gccaagaagtgtctcccagggctgaataggcgtcaaag 398
                |||||||||| |||||||||| ||||||||||||||||
Sbjct: 26013404 gccaagaagtttctcccagggttgaataggcgtcaaag 26013367



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  337 bits (170), Expect = 2e-89
 Identities = 341/398 (85%)
 Strand = Plus / Minus

                                                                            
Query: 1        caagtagttctccgcagctggaaagattccctggaagcactcaagacatgtgatgtcctt 60
                |||||||| ||||| ||||||||||||||||||||||| ||   ||||||||||| ||||
Sbjct: 25941940 caagtagtcctccgaagctggaaagattccctggaagcgcttcggacatgtgatggcctt 25941881

                                                                            
Query: 61       ctccctcatgccgaagaccttcacattgcgaagaggtgcgtcgagtcgttggctgccaag 120
                ||||||||||| |||||||||||||||| |||||| ||| |||| || ||||||| ||| 
Sbjct: 25941880 ctccctcatgctgaagaccttcacattgtgaagagatgcatcgaatcattggctggcaaa 25941821

                                                                            
Query: 121      gctagcatcgatccagacctctttggctggccagtatcagagcacggtgcgatgcatagc 180
                |||||||||||||| |||||||| ||||||||||| || || ||  || | ||||| |||
Sbjct: 25941820 gctagcatcgatccggacctcttcggctggccagtctcggaacatagtaccatgcaaagc 25941761

                                                                            
Query: 181      cccgggggcagtgtgttgtggaatggtattagcacaggcgctaagctcgggaacttcagc 240
                |||||||| ||||| ||||||||||| || ||||| || || ||| |  |||||| ||| 
Sbjct: 25941760 cccgggggaagtgtcttgtggaatggcataagcacgggtgcgaaggttaggaactgcagt 25941701

                                                                            
Query: 241      tcagattggtggtatgatgatgcttcatcattgagcttccctacatacaagaggcttatc 300
                || || |||||||||||||||||||| ||  |||||||||||||||||||||||||||| 
Sbjct: 25941700 tcggactggtggtatgatgatgcttcctccctgagcttccctacatacaagaggcttatt 25941641

                                                                            
Query: 301      tccactatggagtcaagaggcgccaaggaggagattgtcgccggttcgctcacatactat 360
                ||  | |||||||||||||||  |||  |||||||  | || ||||||||||||||||| 
Sbjct: 25941640 tcttccatggagtcaagaggcatcaaacaggagatcattgcgggttcgctcacatactac 25941581

                                                      
Query: 361      gccaagaagtgtctcccagggctgaataggcgtcaaag 398
                |||||||||| |||||||||| ||||||||||||||||
Sbjct: 25941580 gccaagaagtttctcccagggttgaataggcgtcaaag 25941543



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>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161806

 Score =  337 bits (170), Expect = 2e-89
 Identities = 341/398 (85%)
 Strand = Plus / Plus

                                                                         
Query: 1     caagtagttctccgcagctggaaagattccctggaagcactcaagacatgtgatgtcctt 60
             |||||||| ||||| ||||||||||||||||||||||| ||   ||||||||||| ||||
Sbjct: 97907 caagtagtcctccgaagctggaaagattccctggaagcgcttcggacatgtgatggcctt 97966

                                                                         
Query: 61    ctccctcatgccgaagaccttcacattgcgaagaggtgcgtcgagtcgttggctgccaag 120
             ||||||||||| |||||||||||||||| |||||| ||| |||| || ||||||| ||| 
Sbjct: 97967 ctccctcatgctgaagaccttcacattgtgaagagatgcatcgaatcattggctggcaaa 98026

                                                                         
Query: 121   gctagcatcgatccagacctctttggctggccagtatcagagcacggtgcgatgcatagc 180
             |||||||||||||| |||||||| ||||||||||| || || ||  || | ||||| |||
Sbjct: 98027 gctagcatcgatccggacctcttcggctggccagtctcggaacatagtaccatgcaaagc 98086

                                                                         
Query: 181   cccgggggcagtgtgttgtggaatggtattagcacaggcgctaagctcgggaacttcagc 240
             |||||||| ||||| ||||||||||| || ||||| || || ||| |  |||||| ||| 
Sbjct: 98087 cccgggggaagtgtcttgtggaatggcataagcacgggtgcgaaggttaggaactgcagt 98146

                                                                         
Query: 241   tcagattggtggtatgatgatgcttcatcattgagcttccctacatacaagaggcttatc 300
             || || |||||||||||||||||||| ||  |||||||||||||||||||||||||||| 
Sbjct: 98147 tcggactggtggtatgatgatgcttcctccctgagcttccctacatacaagaggcttatt 98206

                                                                         
Query: 301   tccactatggagtcaagaggcgccaaggaggagattgtcgccggttcgctcacatactat 360
             ||  | |||||||||||||||  |||  |||||||  | || ||||||||||||||||| 
Sbjct: 98207 tcttccatggagtcaagaggcatcaaacaggagatcattgcgggttcgctcacatactac 98266

                                                   
Query: 361   gccaagaagtgtctcccagggctgaataggcgtcaaag 398
             |||||||||| |||||||||| ||||||||||||||||
Sbjct: 98267 gccaagaagtttctcccagggttgaataggcgtcaaag 98304



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>gb|AC147427.2| Oryza sativa chromosome 3  B1394A07 genomic sequence, complete sequence
          Length = 175704

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 208/263 (79%)
 Strand = Plus / Plus

                                                                         
Query: 18    ctggaaagattccctggaagcactcaagacatgtgatgtccttctccctcatgccgaaga 77
             |||||||||||| ||| |||||||  | |||||||| |  || ||||||||||| ||| |
Sbjct: 45275 ctggaaagattctctgaaagcactggaaacatgtgaagatctcctccctcatgctgaaaa 45334

                                                                         
Query: 78    ccttcacattgcgaagaggtgcgtcgagtcgttggctgccaaggctagcatcgatccaga 137
             |||||| |||| |||||| ||| | ||||| || ||  | |||||||  | ||||||| |
Sbjct: 45335 ccttcaaattgtgaagagatgcattgagtcattagcatcgaaggctactaccgatccaaa 45394

                                                                         
Query: 138   cctctttggctggccagtatcagagcacggtgcgatgcatagccccgggggcagtgtgtt 197
             ||||||||| |||||| ||   || || ||    ||||| |||||||| ||||||||  |
Sbjct: 45395 cctctttggttggccaataagggaacatggcattatgcaaagccccggtggcagtgtact 45454

                                                                         
Query: 198   gtggaatggtattagcacaggcgctaagctcgggaacttcagctcagattggtggtatga 257
             |||||| || || |||||||| || | || | | |||||||| ||| | |||||||||||
Sbjct: 45455 gtggaacgggatcagcacaggtgccaggcccagaaacttcagttcaaactggtggtatga 45514

                                    
Query: 258   tgatgcttcatcattgagcttcc 280
              ||||||||| ||||||| ||||
Sbjct: 45515 ggatgcttcagcattgagtttcc 45537



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 352   acatactatgccaagaagtgtctcccagggctgaataggcgtcaaagtatggga 405
             ||||||||||| || |||| |||||| || || ||||||||||| || ||||||
Sbjct: 45609 acatactatgctaaaaagtatctcccgggactaaataggcgtcatagcatggga 45662



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 208/263 (79%)
 Strand = Plus / Minus

                                                                            
Query: 18       ctggaaagattccctggaagcactcaagacatgtgatgtccttctccctcatgccgaaga 77
                |||||||||||| ||| |||||||  | |||||||| |  || ||||||||||| ||| |
Sbjct: 24590585 ctggaaagattctctgaaagcactggaaacatgtgaagatctcctccctcatgctgaaaa 24590526

                                                                            
Query: 78       ccttcacattgcgaagaggtgcgtcgagtcgttggctgccaaggctagcatcgatccaga 137
                |||||| |||| |||||| ||| | ||||| || ||  | |||||||  | ||||||| |
Sbjct: 24590525 ccttcaaattgtgaagagatgcattgagtcattagcatcgaaggctactaccgatccaaa 24590466

                                                                            
Query: 138      cctctttggctggccagtatcagagcacggtgcgatgcatagccccgggggcagtgtgtt 197
                ||||||||| |||||| ||   || || ||    ||||| |||||||| ||||||||  |
Sbjct: 24590465 cctctttggttggccaataagggaacatggcattatgcaaagccccggtggcagtgtact 24590406

                                                                            
Query: 198      gtggaatggtattagcacaggcgctaagctcgggaacttcagctcagattggtggtatga 257
                |||||| || || |||||||| || | || | | |||||||| ||| | |||||||||||
Sbjct: 24590405 gtggaacgggatcagcacaggtgccaggcccagaaacttcagttcaaactggtggtatga 24590346

                                       
Query: 258      tgatgcttcatcattgagcttcc 280
                 ||||||||| ||||||| ||||
Sbjct: 24590345 ggatgcttcagcattgagtttcc 24590323



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                      
Query: 352      acatactatgccaagaagtgtctcccagggctgaataggcgtcaaagtatggga 405
                ||||||||||| || |||| |||||| || || ||||||||||| || ||||||
Sbjct: 24590251 acatactatgctaaaaagtatctcccgggactaaataggcgtcatagcatggga 24590198



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>emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OSJNBa0025B02 of library OSJNBa from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136470

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 208/263 (79%)
 Strand = Plus / Minus

                                                                         
Query: 18    ctggaaagattccctggaagcactcaagacatgtgatgtccttctccctcatgccgaaga 77
             |||||||||||| ||| |||||||  | |||||||| |  || ||||||||||| ||| |
Sbjct: 22630 ctggaaagattctctgaaagcactggaaacatgtgaagatctcctccctcatgctgaaaa 22571

                                                                         
Query: 78    ccttcacattgcgaagaggtgcgtcgagtcgttggctgccaaggctagcatcgatccaga 137
             |||||| |||| |||||| ||| | ||||| || ||  | |||||||  | ||||||| |
Sbjct: 22570 ccttcaaattgtgaagagatgcattgagtcattagcatcgaaggctactaccgatccaaa 22511

                                                                         
Query: 138   cctctttggctggccagtatcagagcacggtgcgatgcatagccccgggggcagtgtgtt 197
             ||||||||| |||||| ||   || || ||    ||||| |||||||| ||||||||  |
Sbjct: 22510 cctctttggttggccaataagggaacatggcattatgcaaagccccggtggcagtgtact 22451

                                                                         
Query: 198   gtggaatggtattagcacaggcgctaagctcgggaacttcagctcagattggtggtatga 257
             |||||| || || |||||||| || | || | | |||||||| ||| | |||||||||||
Sbjct: 22450 gtggaacgggatcagcacaggtgccaggcccagaaacttcagttcaaactggtggtatga 22391

                                    
Query: 258   tgatgcttcatcattgagcttcc 280
              ||||||||| ||||||| ||||
Sbjct: 22390 ggatgcttcagcattgagtttcc 22368



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 352   acatactatgccaagaagtgtctcccagggctgaataggcgtcaaagtatggga 405
             ||||||||||| || |||| |||||| || || ||||||||||| || ||||||
Sbjct: 22296 acatactatgctaaaaagtatctcccgggactaaataggcgtcatagcatggga 22243



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 208/263 (79%)
 Strand = Plus / Minus

                                                                            
Query: 18       ctggaaagattccctggaagcactcaagacatgtgatgtccttctccctcatgccgaaga 77
                |||||||||||| ||| |||||||  | |||||||| |  || ||||||||||| ||| |
Sbjct: 24508054 ctggaaagattctctgaaagcactggaaacatgtgaagatctcctccctcatgctgaaaa 24507995

                                                                            
Query: 78       ccttcacattgcgaagaggtgcgtcgagtcgttggctgccaaggctagcatcgatccaga 137
                |||||| |||| |||||| ||| | ||||| || ||  | |||||||  | ||||||| |
Sbjct: 24507994 ccttcaaattgtgaagagatgcattgagtcattagcatcgaaggctactaccgatccaaa 24507935

                                                                            
Query: 138      cctctttggctggccagtatcagagcacggtgcgatgcatagccccgggggcagtgtgtt 197
                ||||||||| |||||| ||   || || ||    ||||| |||||||| ||||||||  |
Sbjct: 24507934 cctctttggttggccaataagggaacatggcattatgcaaagccccggtggcagtgtact 24507875

                                                                            
Query: 198      gtggaatggtattagcacaggcgctaagctcgggaacttcagctcagattggtggtatga 257
                |||||| || || |||||||| || | || | | |||||||| ||| | |||||||||||
Sbjct: 24507874 gtggaacgggatcagcacaggtgccaggcccagaaacttcagttcaaactggtggtatga 24507815

                                       
Query: 258      tgatgcttcatcattgagcttcc 280
                 ||||||||| ||||||| ||||
Sbjct: 24507814 ggatgcttcagcattgagtttcc 24507792



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                      
Query: 352      acatactatgccaagaagtgtctcccagggctgaataggcgtcaaagtatggga 405
                ||||||||||| || |||| |||||| || || ||||||||||| || ||||||
Sbjct: 24507720 acatactatgctaaaaagtatctcccgggactaaataggcgtcatagcatggga 24507667



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>gb|AY111357.1| Zea mays CL11582_1 mRNA sequence
          Length = 554

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 241 tcagattggtggtatgatgatgcttcatcattgagcttccctacatacaagaggcttatc 300
           ||||| |||||||||| |||||||||||||||||| || || |  || |||||| | |||
Sbjct: 269 tcagactggtggtatggtgatgcttcatcattgagttttcccatgtataagaggttaatc 328

                         
Query: 301 tccactatggagtc 314
           ||||| ||||||||
Sbjct: 329 tccaccatggagtc 342



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>ref|XM_479933.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3114

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 244  gattggtggtatgatgatgcttcat 268
            ||||||||||||||||||| |||||
Sbjct: 1443 gattggtggtatgatgatgtttcat 1467



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>gb|AC104411.5| Homo sapiens 3 BAC RP11-555M1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 70499

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    tggaaagattccctggaagca 39
             |||||||||||||||||||||
Sbjct: 29176 tggaaagattccctggaagca 29196



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>ref|NM_064640.2| Caenorhabditis elegans C38C6.3 (C38C6.3) mRNA, complete cds
          Length = 1001

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 241 tcagattggtggtatgatgat 261
           |||||||||||||||||||||
Sbjct: 600 tcagattggtggtatgatgat 620



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 244     gattggtggtatgatgatgcttcat 268
               ||||||||||||||||||| |||||
Sbjct: 1719572 gattggtggtatgatgatgtttcat 1719548



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 66       tcatgccgaagaccttcaca 85
                ||||||||||||||||||||
Sbjct: 11847258 tcatgccgaagaccttcaca 11847277



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>dbj|AP005250.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBb0009H02
          Length = 155388

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 244  gattggtggtatgatgatgcttcat 268
            ||||||||||||||||||| |||||
Sbjct: 1933 gattggtggtatgatgatgtttcat 1909



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>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0582D05
          Length = 150483

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 244    gattggtggtatgatgatgcttcat 268
              ||||||||||||||||||| |||||
Sbjct: 119072 gattggtggtatgatgatgtttcat 119048



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>dbj|AK100956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140F10, full
            insert sequence
          Length = 3115

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 244  gattggtggtatgatgatgcttcat 268
            ||||||||||||||||||| |||||
Sbjct: 1444 gattggtggtatgatgatgtttcat 1468



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>gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, complete sequence
          Length = 212494

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 352   acatactatgccaagaagtgtctc 375
             |||||||||| |||||||||||||
Sbjct: 32922 acatactatgtcaagaagtgtctc 32899



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>gb|AC068607.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-392C14, complete
              sequence
          Length = 218081

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    cttcatcattgagcttccct 282
              ||||||||||||||||||||
Sbjct: 201143 cttcatcattgagcttccct 201162



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>gb|DQ002407.1| Zea mays copia retrotransposon opie1, gypsy retrotransposon grande1,
              xilon1 retrotransposon, helitron B73_14578, gypsy
              retrotransposon huck1 and ruda retrotransposon, complete
              sequence
          Length = 152384

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    ttgtggaatggtattagcac 215
              ||||||||||||||||||||
Sbjct: 144630 ttgtggaatggtattagcac 144649



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>ref|XM_751648.1| Ustilago maydis 521 hypothetical protein (UM00594.1) partial mRNA
          Length = 1512

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  agtcgttggctgccaaggct 123
            ||||||||||||||||||||
Sbjct: 1190 agtcgttggctgccaaggct 1209



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>gb|AC074132.5| Homo sapiens chromosome 5 clone CTD-2266L18, complete sequence
          Length = 118131

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    caagacatgtgatgtccttctccc 65
             ||||||||||||| ||||||||||
Sbjct: 63218 caagacatgtgatttccttctccc 63241



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 270     attgagcttccctacataca 289
               ||||||||||||||||||||
Sbjct: 5592682 attgagcttccctacataca 5592663



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>gb|AC079807.5| Homo sapiens BAC clone RP11-760G15 from 2, complete sequence
          Length = 156175

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 392   gtcaaagtatgggactggta 411
             ||||||||||||||||||||
Sbjct: 37283 gtcaaagtatgggactggta 37264



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>gb|AY819983.1| Aspergillus auricomus strain CBS 61378 beta-tubulin-like gene,
           partial sequence
          Length = 578

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 tgatgatgcttcatcattga 274
           ||||||||||||||||||||
Sbjct: 91  tgatgatgcttcatcattga 110



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>gb|AY819982.1| Aspergillus auricomus strain CBS 46765 beta-tubulin-like gene,
           partial sequence
          Length = 576

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 tgatgatgcttcatcattga 274
           ||||||||||||||||||||
Sbjct: 89  tgatgatgcttcatcattga 108



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>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664C05
          Length = 165354

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    attgagcttccctacataca 289
              ||||||||||||||||||||
Sbjct: 139590 attgagcttccctacataca 139571



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>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1705_A03
          Length = 168689

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     tcatgccgaagaccttcaca 85
              ||||||||||||||||||||
Sbjct: 125543 tcatgccgaagaccttcaca 125562



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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
              fertilization-independent endosperm proteins, hypothetical
              protein, putative non-LTR retroelement reverse
              transcriptase, OCL5 protein, tryptophan synthase
              beta-subunit, hypothetical proteins, putative AP
              endonuclease, putative RNA polymerase II complex component
              SRB7, putative beta-1,3-glucanase, hypothetical protein,
              TNP2-like protein, hypothetical protein, putative
              phosphate/phosphoenolpyruvate translocator, putative
              protein, hypothetical proteins, putative
              galactosyltransferase family, hypothetical protein,
              putative cytochrome P450 family, putative lipid transfer
              protein, putative photoreceptor-interacting protein, and
              hypothetical protein genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 202197

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    ttgtggaatggtattagcac 215
              ||||||||||||||||||||
Sbjct: 193389 ttgtggaatggtattagcac 193408



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>gb|AC159013.2| Gallus gallus BAC clone CH261-33A3 from chromosome unknown, complete
             sequence
          Length = 166005

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tccctggaagcactcaagac 47
             ||||||||||||||||||||
Sbjct: 44585 tccctggaagcactcaagac 44566



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>gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromosome unknown, complete
             sequence
          Length = 267345

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tccctggaagcactcaagac 47
             ||||||||||||||||||||
Sbjct: 38459 tccctggaagcactcaagac 38440


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,944,093
Number of Sequences: 3902068
Number of extensions: 2944093
Number of successful extensions: 44703
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44575
Number of HSP's gapped (non-prelim): 125
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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