ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet06f02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188589.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 951 Score = 252 bits (127), Expect = 9e-64 Identities = 357/433 (82%), Gaps = 3/433 (0%) Strand = Plus / Plus Query: 4 aagggcgactacacactcaccacgcggttcagtggcaaaagagtgggcatcatcgggctg 63 |||||||||| ||| |||||||| |||||||||||||| ||||| ||||||||||| || Sbjct: 406 aagggcgacttcacgctcaccactcggttcagtggcaagagagtcggcatcatcggtttg 465 Query: 64 ggcaggatagggctagccattgccacccgagtggaggcctttgattgccctgtcaactac 123 |||||||| ||||| ||| | || | |||||||||||||| || ||||| || |||||| Sbjct: 466 ggcaggatcgggctcgccgtcgcgaagcgagtggaggccttcgactgcccggtgaactac 525 Query: 124 ---cagagaacaaagaaagactaccccaactacacctattaccccagcgtggttgaactg 180 ||||| || ||| | || ||||| ||||||||| ||||| ||||| || ||| Sbjct: 526 taccagaggacgaagcaggatcaccccggctacacctactacccgtcggtggtggagctg 585 Query: 181 gcagtaaacagcgacatcctggtggtggcttgcccgctgaacgagcagacccggcacatc 240 || | | ||||||| | ||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 586 gcggcgagcagcgacgtgctggtggtggcgtgcccgctgaacgagcacacccggcacatc 645 Query: 241 gtcaaccgcgaggtgatcgaggcgctggggcctaagggcgtgctcataaacatcggtcgc 300 || ||||| |||||||| |||||||||||||| | ||||||||| || |||||||| || Sbjct: 646 gtgaaccgggaggtgatggaggcgctggggcccaggggcgtgctgatcaacatcggccgg 705 Query: 301 ggccctcacgtcgacgagcctgagctggtctcggccctcgtcgaggggcgcctcggcggg 360 || || |||||||||||| | | | |||| |||| || | ||| || || |||||||| Sbjct: 706 gggccgcacgtcgacgaggcggcgatggtggcggcgctggccgacggccggctcggcggc 765 Query: 361 gcgggccttgacgtgttcgaggacgagcccaacgtgcccgaggcgctgttcgcgctcgac 420 || || || |||||||||||||||||||| |||||||||||||||||| ||| | | ||| Sbjct: 766 gccgggctggacgtgttcgaggacgagccgaacgtgcccgaggcgctgctcgggatggac 825 Query: 421 aacgtcgtgctgg 433 ||||||||||||| Sbjct: 826 aacgtcgtgctgg 838
>dbj|AK069655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031I17, full insert sequence Length = 1397 Score = 252 bits (127), Expect = 9e-64 Identities = 357/433 (82%), Gaps = 3/433 (0%) Strand = Plus / Plus Query: 4 aagggcgactacacactcaccacgcggttcagtggcaaaagagtgggcatcatcgggctg 63 |||||||||| ||| |||||||| |||||||||||||| ||||| ||||||||||| || Sbjct: 664 aagggcgacttcacgctcaccactcggttcagtggcaagagagtcggcatcatcggtttg 723 Query: 64 ggcaggatagggctagccattgccacccgagtggaggcctttgattgccctgtcaactac 123 |||||||| ||||| ||| | || | |||||||||||||| || ||||| || |||||| Sbjct: 724 ggcaggatcgggctcgccgtcgcgaagcgagtggaggccttcgactgcccggtgaactac 783 Query: 124 ---cagagaacaaagaaagactaccccaactacacctattaccccagcgtggttgaactg 180 ||||| || ||| | || ||||| ||||||||| ||||| ||||| || ||| Sbjct: 784 taccagaggacgaagcaggatcaccccggctacacctactacccgtcggtggtggagctg 843 Query: 181 gcagtaaacagcgacatcctggtggtggcttgcccgctgaacgagcagacccggcacatc 240 || | | ||||||| | ||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 844 gcggcgagcagcgacgtgctggtggtggcgtgcccgctgaacgagcacacccggcacatc 903 Query: 241 gtcaaccgcgaggtgatcgaggcgctggggcctaagggcgtgctcataaacatcggtcgc 300 || ||||| |||||||| |||||||||||||| | ||||||||| || |||||||| || Sbjct: 904 gtgaaccgggaggtgatggaggcgctggggcccaggggcgtgctgatcaacatcggccgg 963 Query: 301 ggccctcacgtcgacgagcctgagctggtctcggccctcgtcgaggggcgcctcggcggg 360 || || |||||||||||| | | | |||| |||| || | ||| || || |||||||| Sbjct: 964 gggccgcacgtcgacgaggcggcgatggtggcggcgctggccgacggccggctcggcggc 1023 Query: 361 gcgggccttgacgtgttcgaggacgagcccaacgtgcccgaggcgctgttcgcgctcgac 420 || || || |||||||||||||||||||| |||||||||||||||||| ||| | | ||| Sbjct: 1024 gccgggctggacgtgttcgaggacgagccgaacgtgcccgaggcgctgctcgggatggac 1083 Query: 421 aacgtcgtgctgg 433 ||||||||||||| Sbjct: 1084 aacgtcgtgctgg 1096
>dbj|AK059778.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B03, full insert sequence Length = 1275 Score = 252 bits (127), Expect = 9e-64 Identities = 357/433 (82%), Gaps = 3/433 (0%) Strand = Plus / Plus Query: 4 aagggcgactacacactcaccacgcggttcagtggcaaaagagtgggcatcatcgggctg 63 |||||||||| ||| |||||||| |||||||||||||| ||||| ||||||||||| || Sbjct: 540 aagggcgacttcacgctcaccactcggttcagtggcaagagagtcggcatcatcggtttg 599 Query: 64 ggcaggatagggctagccattgccacccgagtggaggcctttgattgccctgtcaactac 123 |||||||| ||||| ||| | || | |||||||||||||| || ||||| || |||||| Sbjct: 600 ggcaggatcgggctcgccgtcgcgaagcgagtggaggccttcgactgcccggtgaactac 659 Query: 124 ---cagagaacaaagaaagactaccccaactacacctattaccccagcgtggttgaactg 180 ||||| || ||| | || ||||| ||||||||| ||||| ||||| || ||| Sbjct: 660 taccagaggacgaagcaggatcaccccggctacacctactacccgtcggtggtggagctg 719 Query: 181 gcagtaaacagcgacatcctggtggtggcttgcccgctgaacgagcagacccggcacatc 240 || | | ||||||| | ||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 720 gcggcgagcagcgacgtgctggtggtggcgtgcccgctgaacgagcacacccggcacatc 779 Query: 241 gtcaaccgcgaggtgatcgaggcgctggggcctaagggcgtgctcataaacatcggtcgc 300 || ||||| |||||||| |||||||||||||| | ||||||||| || |||||||| || Sbjct: 780 gtgaaccgggaggtgatggaggcgctggggcccaggggcgtgctgatcaacatcggccgg 839 Query: 301 ggccctcacgtcgacgagcctgagctggtctcggccctcgtcgaggggcgcctcggcggg 360 || || |||||||||||| | | | |||| |||| || | ||| || || |||||||| Sbjct: 840 gggccgcacgtcgacgaggcggcgatggtggcggcgctggccgacggccggctcggcggc 899 Query: 361 gcgggccttgacgtgttcgaggacgagcccaacgtgcccgaggcgctgttcgcgctcgac 420 || || || |||||||||||||||||||| |||||||||||||||||| ||| | | ||| Sbjct: 900 gccgggctggacgtgttcgaggacgagccgaacgtgcccgaggcgctgctcgggatggac 959 Query: 421 aacgtcgtgctgg 433 ||||||||||||| Sbjct: 960 aacgtcgtgctgg 972
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 224 bits (113), Expect = 2e-55 Identities = 334/407 (82%), Gaps = 3/407 (0%) Strand = Plus / Minus Query: 30 gttcagtggcaaaagagtgggcatcatcgggctgggcaggatagggctagccattgccac 89 |||||||||||| ||||| ||||||||||| |||||||||| ||||| ||| | || | Sbjct: 7099779 gttcagtggcaagagagtcggcatcatcggtttgggcaggatcgggctcgccgtcgcgaa 7099720 Query: 90 ccgagtggaggcctttgattgccctgtcaactac---cagagaacaaagaaagactaccc 146 |||||||||||||| || ||||| || |||||| ||||| || ||| | || |||| Sbjct: 7099719 gcgagtggaggccttcgactgcccggtgaactactaccagaggacgaagcaggatcaccc 7099660 Query: 147 caactacacctattaccccagcgtggttgaactggcagtaaacagcgacatcctggtggt 206 | ||||||||| ||||| ||||| || ||||| | | ||||||| | |||||||| Sbjct: 7099659 cggctacacctactacccgtcggtggtggagctggcggcgagcagcgacgtgctggtggt 7099600 Query: 207 ggcttgcccgctgaacgagcagacccggcacatcgtcaaccgcgaggtgatcgaggcgct 266 ||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| Sbjct: 7099599 ggcgtgcccgctgaacgagcacacccggcacatcgtgaaccgggaggtgatggaggcgct 7099540 Query: 267 ggggcctaagggcgtgctcataaacatcggtcgcggccctcacgtcgacgagcctgagct 326 |||||| | ||||||||| || |||||||| || || || |||||||||||| | | | | Sbjct: 7099539 ggggcccaggggcgtgctgatcaacatcggccgggggccgcacgtcgacgaggcggcgat 7099480 Query: 327 ggtctcggccctcgtcgaggggcgcctcggcggggcgggccttgacgtgttcgaggacga 386 ||| |||| || | ||| || || |||||||| || || || ||||||||||||||||| Sbjct: 7099479 ggtggcggcgctggccgacggccggctcggcggcgccgggctggacgtgttcgaggacga 7099420 Query: 387 gcccaacgtgcccgaggcgctgttcgcgctcgacaacgtcgtgctgg 433 ||| |||||||||||||||||| ||| | | |||||||||||||||| Sbjct: 7099419 gccgaacgtgcccgaggcgctgctcgggatggacaacgtcgtgctgg 7099373
>dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0452F10 Length = 145120 Score = 224 bits (113), Expect = 2e-55 Identities = 334/407 (82%), Gaps = 3/407 (0%) Strand = Plus / Minus Query: 30 gttcagtggcaaaagagtgggcatcatcgggctgggcaggatagggctagccattgccac 89 |||||||||||| ||||| ||||||||||| |||||||||| ||||| ||| | || | Sbjct: 87359 gttcagtggcaagagagtcggcatcatcggtttgggcaggatcgggctcgccgtcgcgaa 87300 Query: 90 ccgagtggaggcctttgattgccctgtcaactac---cagagaacaaagaaagactaccc 146 |||||||||||||| || ||||| || |||||| ||||| || ||| | || |||| Sbjct: 87299 gcgagtggaggccttcgactgcccggtgaactactaccagaggacgaagcaggatcaccc 87240 Query: 147 caactacacctattaccccagcgtggttgaactggcagtaaacagcgacatcctggtggt 206 | ||||||||| ||||| ||||| || ||||| | | ||||||| | |||||||| Sbjct: 87239 cggctacacctactacccgtcggtggtggagctggcggcgagcagcgacgtgctggtggt 87180 Query: 207 ggcttgcccgctgaacgagcagacccggcacatcgtcaaccgcgaggtgatcgaggcgct 266 ||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| Sbjct: 87179 ggcgtgcccgctgaacgagcacacccggcacatcgtgaaccgggaggtgatggaggcgct 87120 Query: 267 ggggcctaagggcgtgctcataaacatcggtcgcggccctcacgtcgacgagcctgagct 326 |||||| | ||||||||| || |||||||| || || || |||||||||||| | | | | Sbjct: 87119 ggggcccaggggcgtgctgatcaacatcggccgggggccgcacgtcgacgaggcggcgat 87060 Query: 327 ggtctcggccctcgtcgaggggcgcctcggcggggcgggccttgacgtgttcgaggacga 386 ||| |||| || | ||| || || |||||||| || || || ||||||||||||||||| Sbjct: 87059 ggtggcggcgctggccgacggccggctcggcggcgccgggctggacgtgttcgaggacga 87000 Query: 387 gcccaacgtgcccgaggcgctgttcgcgctcgacaacgtcgtgctgg 433 ||| |||||||||||||||||| ||| | | |||||||||||||||| Sbjct: 86999 gccgaacgtgcccgaggcgctgctcgggatggacaacgtcgtgctgg 86953
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 370 gacgtgttcgaggacgagcccaacgtgcccgaggcgctgttcgcgctcgacaacgtcgtg 429 |||||||||||| |||||| |||||||||| || ||||||||||||||||||| ||| Sbjct: 1827132 gacgtgttcgagcgcgagccgcacgtgcccgaagcattgttcgcgctcgacaacgtggtg 1827191 Query: 430 ctg 432 ||| Sbjct: 1827192 ctg 1827194
>dbj|AK101390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036K01, full insert sequence Length = 1332 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 4 aagggcgactacacactcaccacgcggttcagtggcaaaagagtgggcatcatcgggctg 63 |||||||||| ||| |||||||| ||||||||||| |||||||| || || | ||||| Sbjct: 583 aagggcgacttcacgctcaccactcggttcagtggtaaaagagttggtattctggggctt 642 Query: 64 ggcaggatagg 74 ||||||||||| Sbjct: 643 ggcaggatagg 653
>ref|XM_479013.1| Oryza sativa (japonica cultivar-group), mRNA Length = 414 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||||||||||||||||||||| Sbjct: 256 gtgttcgaggacgagcccaacgtgcc 281
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||||||||||||||||||||| Sbjct: 21702897 gtgttcgaggacgagcccaacgtgcc 21702922
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||||||||||||||||||||| Sbjct: 24318200 gtgttcgaggacgagcccaacgtgcc 24318225
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1579_C03 Length = 122851 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||||||||||||||||||||| Sbjct: 51393 gtgttcgaggacgagcccaacgtgcc 51418
>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453E05 Length = 137364 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||||||||||||||||||||| Sbjct: 129751 gtgttcgaggacgagcccaacgtgcc 129776
>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C12 Length = 136799 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||||||||||||||||||||| Sbjct: 70467 gtgttcgaggacgagcccaacgtgcc 70492
>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0708B04 Length = 170523 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||||||||||||||||||||| Sbjct: 163071 gtgttcgaggacgagcccaacgtgcc 163096
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 50.1 bits (25), Expect = 0.006 Identities = 40/45 (88%) Strand = Plus / Minus Query: 364 ggccttgacgtgttcgaggacgagcccaacgtgcccgaggcgctg 408 ||||| ||||| |||||| |||||||||| || |||||||||||| Sbjct: 49457 ggcctcgacgtcttcgagaacgagcccaatgttcccgaggcgctg 49413
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 367 cttgacgtgttcgaggacgagcccaacgt 395 ||||||||||||||| ||||||||||||| Sbjct: 88574 cttgacgtgttcgagcacgagcccaacgt 88546
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 357 cggggcgggccttgacgtgttcgaggacgagcc 389 ||||||||| || |||||||||||||||||||| Sbjct: 853106 cggggcggggctcgacgtgttcgaggacgagcc 853138
>gb|AY842251.1| Chlamydomonas reinhardtii hydroxypyruvate reductase mRNA, partial cds Length = 931 Score = 46.1 bits (23), Expect = 0.100 Identities = 26/27 (96%) Strand = Plus / Plus Query: 364 ggccttgacgtgttcgaggacgagccc 390 ||||| ||||||||||||||||||||| Sbjct: 748 ggcctggacgtgttcgaggacgagccc 774
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 247 cgcgaggtgatcgaggcgctggg 269 ||||||||||||||||||||||| Sbjct: 2573764 cgcgaggtgatcgaggcgctggg 2573742
>ref|XM_470988.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 981 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||| ||||||||||||||||| Sbjct: 799 gtgttcgacgacgagcccaacgtgcc 824
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 360 ggcgggccttgacgtgttcgaggacgagcc 389 ||||||||||||||||||||| | |||||| Sbjct: 3235219 ggcgggccttgacgtgttcgaaggcgagcc 3235190
>emb|AJ224473.1|GGA224473 Gallus gallus mRNA for formiminotransferase cyclodeaminase Length = 1737 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 gaggtgatcgaggcgctggggc 271 |||||||||||||||||||||| Sbjct: 82 gaggtgatcgaggcgctggggc 103
>ref|NM_204903.1| Gallus gallus formiminotransferase cyclodeaminase (FTCD), mRNA Length = 1737 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 250 gaggtgatcgaggcgctggggc 271 |||||||||||||||||||||| Sbjct: 82 gaggtgatcgaggcgctggggc 103
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||| ||||||||||||||||| Sbjct: 437390 gtgttcgacgacgagcccaacgtgcc 437415
>dbj|AK070553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059A13, full insert sequence Length = 1100 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||| ||||||||||||||||| Sbjct: 841 gtgttcgacgacgagcccaacgtgcc 866
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 211 tgcccgctgaacgagcagacccggca 236 ||||||||||||||||| |||||||| Sbjct: 877552 tgcccgctgaacgagcacacccggca 877527
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 373 gtgttcgaggacgagcccaacgtgcc 398 |||||||| ||||||||||||||||| Sbjct: 76142 gtgttcgacgacgagcccaacgtgcc 76167
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 245 accgcgaggtgatcgaggcgctggg 269 |||||||||||||||||| |||||| Sbjct: 1796030 accgcgaggtgatcgaggtgctggg 1796054
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 404 cgctgttcgcgctcgacaacgtcgt 428 ||||||||| ||||||||||||||| Sbjct: 4344184 cgctgttcgggctcgacaacgtcgt 4344160
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 gagtgggcatcatcgggctgggca 67 |||| ||||||||||||||||||| Sbjct: 97119 gagtcggcatcatcgggctgggca 97142
>gb|AC134470.5| Mus musculus BAC clone RP23-120K22 from chromosome 14, complete sequence Length = 211779 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tgtcaactaccagagaacaaagaa 137 ||||| |||||||||||||||||| Sbjct: 122488 tgtcacctaccagagaacaaagaa 122511
>gb|AC111057.6| Mus musculus chromosome 15, clone RP24-572A2, complete sequence Length = 127727 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cagagaacaaagaaagacta 143 |||||||||||||||||||| Sbjct: 119735 cagagaacaaagaaagacta 119716
>gb|AC113318.8| Mus musculus chromosome 3, clone RP23-442I7, complete sequence Length = 213409 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cagagaacaaagaaagacta 143 |||||||||||||||||||| Sbjct: 116797 cagagaacaaagaaagacta 116778
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 gtcaaccgcgaggtgatcgaggcg 264 |||| ||||||||||||||||||| Sbjct: 1366095 gtcacccgcgaggtgatcgaggcg 1366072
>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic sequence, complete sequence Length = 144544 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 gagtgggcatcatcgggctgggca 67 |||| ||||||||||||||||||| Sbjct: 120580 gagtcggcatcatcgggctgggca 120557
>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 Length = 2005935 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 cgctgttcgcgctcgacaac 423 |||||||||||||||||||| Sbjct: 195690 cgctgttcgcgctcgacaac 195709
>gb|AC154253.2| Mus musculus BAC clone RP24-201F24 from chromosome 14, complete sequence Length = 161496 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tgtcaactaccagagaacaaagaa 137 ||||| |||||||||||||||||| Sbjct: 148057 tgtcacctaccagagaacaaagaa 148080
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 gagtgggcatcatcgggctgggca 67 |||| ||||||||||||||||||| Sbjct: 6789732 gagtcggcatcatcgggctgggca 6789709
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 cgaggcgctgttcgcgctcg 418 |||||||||||||||||||| Sbjct: 817572 cgaggcgctgttcgcgctcg 817553
>dbj|AK105557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B05, full insert sequence Length = 1861 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 44 gagtgggcatcatcgggctgggca 67 |||| ||||||||||||||||||| Sbjct: 328 gagtcggcatcatcgggctgggca 351
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 gagtgggcatcatcgggctgggca 67 |||| ||||||||||||||||||| Sbjct: 6856199 gagtcggcatcatcgggctgggca 6856176
>gb|AC003002.1|AC003002 Human DNA from overlapping chromosome 19-specific cosmids R29515 and R28253, genomic sequence, complete sequence Length = 81786 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 agagaacaaagaaagactac 144 |||||||||||||||||||| Sbjct: 12651 agagaacaaagaaagactac 12632
>gb|AC116390.13| Mus musculus chromosome 15, clone RP23-78N1, complete sequence Length = 232133 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 cagagaacaaagaaagacta 143 |||||||||||||||||||| Sbjct: 3568 cagagaacaaagaaagacta 3549
>gb|AC005261.2| Homo sapiens chromosome 19, CIT-HSP-444n24, complete sequence Length = 190708 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 agagaacaaagaaagactac 144 |||||||||||||||||||| Sbjct: 190691 agagaacaaagaaagactac 190672 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,542,833 Number of Sequences: 3902068 Number of extensions: 2542833 Number of successful extensions: 49619 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48560 Number of HSP's gapped (non-prelim): 1054 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
