ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet06e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1T22D4_MOUSE (Q9EQN3) TSC22 domain family protein 4 (TSC22-relate... 30 1.9
2PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phospha... 29 4.3
3CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC... 29 5.7
4NUPL2_CHICK (Q5ZI22) Nucleoporin-like 2 29 5.7
5PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing pr... 28 7.4
6T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-relate... 28 7.4
7SYN1_RAT (P09951) Synapsin-1 (Synapsin I) 28 7.4
8SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I) 28 7.4

>T22D4_MOUSE (Q9EQN3) TSC22 domain family protein 4 (TSC22-related-inducible|
           leucine zipper protein 2)
          Length = 387

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 296 ASPPPRIPISRFELDAGGRGRPGSCFPRP 210
           A PPPR+P      D GGRG P +  P P
Sbjct: 37  AGPPPRLPNGDPNPDPGGRGTPRNGSPPP 65



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>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC|
           3.1.3.16) (Pleckstrin homology domain-containing family
           E protein 1) (Suprachiasmatic nucleus circadian
           oscillatory protein)
          Length = 1696

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -3

Query: 268 PDSSSTPGAAGGQAHASPDRIPLP 197
           P SSST GA  G A A P  +PLP
Sbjct: 250 PPSSSTVGAVRGPARAPPADLPLP 273



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>CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC2L2 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 2) (CDK11)
          Length = 780

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 299 WASPPPRIPISRFELDAGGRGRPGSCFPRP 210
           W+  PPR P  RFEL  G   +PG   P P
Sbjct: 219 WSRSPPRPPRERFEL--GDGRKPGEARPAP 246



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>NUPL2_CHICK (Q5ZI22) Nucleoporin-like 2|
          Length = 413

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
 Frame = -1

Query: 381 TSSPQALE----GRSSCPLPAPSGFPSCGEDMGISSSADSYLPIXXXXXXXXXXRLMLPP 214
           TSSP        G SS P  A   F + G   G  +S  S               L +  
Sbjct: 272 TSSPSVPNPVGSGNSSAPSAASFSFKTSGTTSGCGTSGLSGFGSSAAANSSSTAPLPVSA 331

Query: 213 TESXXXXXXXXXXXXCSAAATGEASG 136
           T S             SAA T  ASG
Sbjct: 332 TPSAATGTSQSGASSASAAQTAGASG 357



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>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1717

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 268 PDSSSTPGAAGGQAHASPDRIPLPL 194
           P + S PGA GG   A P  +PLP+
Sbjct: 282 PPARSAPGAFGGPPRAPPADLPLPV 306



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>T22D4_HUMAN (Q9Y3Q8) TSC22 domain family protein 4 (TSC22-related-inducible|
           leucine zipper protein 2) (Tsc-22-like protein THG-1)
          Length = 395

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 290 PPPRIPISRFELDAGGRGRPGSCFPRP 210
           PPPR+P      D GG+G P +  P P
Sbjct: 39  PPPRLPNGEPSPDPGGKGTPRNGSPPP 65



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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 268 PDSSSTPGAAGGQAHASPDRIPLPLRLASPPA 173
           P S+++PGA  G A AS +R      +ASP A
Sbjct: 34  PPSAASPGATPGSAAASAERASTAAPVASPAA 65



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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 268 PDSSSTPGAAGGQAHASPDRIPLPLRLASPPA 173
           P S+++PGA  G A AS +R      +ASP A
Sbjct: 34  PPSAASPGATPGSATASAERASTAAPVASPAA 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,197,199
Number of Sequences: 219361
Number of extensions: 551776
Number of successful extensions: 1671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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