ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet06e05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475190.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1158 Score = 105 bits (53), Expect = 6e-20 Identities = 91/103 (88%), Gaps = 3/103 (2%) Strand = Plus / Plus Query: 133 gtcgttcccgtcgccggcgtcgtcctcg---gcgtcgtcctccgagttcgagttcacggt 189 |||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||| Sbjct: 36 gtcgttcccgtcgccggcgtcgtcgtcgtcggcgtcgtcgtcggagttcgagttcacggt 95 Query: 190 gacgcagtcgccggggtccaagcagcggtcggcggtgcagctg 232 |||| |||||||| ||| |||||| ||||||||| ||||||| Sbjct: 96 cacgctgtcgccggcgtcgaagcagaggtcggcggcgcagctg 138
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 105 bits (53), Expect = 6e-20 Identities = 91/103 (88%), Gaps = 3/103 (2%) Strand = Plus / Minus Query: 133 gtcgttcccgtcgccggcgtcgtcctcg---gcgtcgtcctccgagttcgagttcacggt 189 |||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||| Sbjct: 18798494 gtcgttcccgtcgccggcgtcgtcgtcgtcggcgtcgtcgtcggagttcgagttcacggt 18798435 Query: 190 gacgcagtcgccggggtccaagcagcggtcggcggtgcagctg 232 |||| |||||||| ||| |||||| ||||||||| ||||||| Sbjct: 18798434 cacgctgtcgccggcgtcgaagcagaggtcggcggcgcagctg 18798392 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 ccgtcgccggcgtcgtcctcggcgt 164 |||||| |||||||||||||||||| Sbjct: 16527476 ccgtcgtcggcgtcgtcctcggcgt 16527452 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cggcgtcgtcctcggcgtcgtcctccga 174 |||||||||| ||||||||||| ||||| Sbjct: 2357454 cggcgtcgtcgtcggcgtcgtcatccga 2357427
>gb|AC105258.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_G07, complete sequence Length = 71145 Score = 105 bits (53), Expect = 6e-20 Identities = 91/103 (88%), Gaps = 3/103 (2%) Strand = Plus / Minus Query: 133 gtcgttcccgtcgccggcgtcgtcctcg---gcgtcgtcctccgagttcgagttcacggt 189 |||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||| Sbjct: 20860 gtcgttcccgtcgccggcgtcgtcgtcgtcggcgtcgtcgtcggagttcgagttcacggt 20801 Query: 190 gacgcagtcgccggggtccaagcagcggtcggcggtgcagctg 232 |||| |||||||| ||| |||||| ||||||||| ||||||| Sbjct: 20800 cacgctgtcgccggcgtcgaagcagaggtcggcggcgcagctg 20758
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 46.1 bits (23), Expect = 0.048 Identities = 26/27 (96%) Strand = Plus / Minus Query: 4 cctctccactctcccgcgaggccaacg 30 |||||||||||||| |||||||||||| Sbjct: 390885 cctctccactctccagcgaggccaacg 390859
>gb|AY974041.1| Zea mays inorganic phosphate transporter 1 mRNA, complete cds Length = 1939 Score = 44.1 bits (22), Expect = 0.19 Identities = 22/22 (100%) Strand = Plus / Minus Query: 147 cggcgtcgtcctcggcgtcgtc 168 |||||||||||||||||||||| Sbjct: 1693 cggcgtcgtcctcggcgtcgtc 1672
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10, complete sequence Length = 134183 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 ccgtcgccggcgtcgtcctcggcgt 164 |||||| |||||||||||||||||| Sbjct: 26215 ccgtcgtcggcgtcgtcctcggcgt 26191
>gb|AY236711.1| Amastigomonas marina heat shock protein 90 (Hsp90) gene, partial cds Length = 1676 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Minus Query: 141 cgtcgccggcgtcgtcctcggcgtcgtcc 169 ||||| |||||||||||||| |||||||| Sbjct: 574 cgtcggcggcgtcgtcctcgtcgtcgtcc 546
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 cgccggcgtcgtcctcggcgt 164 ||||||||||||||||||||| Sbjct: 2650306 cgccggcgtcgtcctcggcgt 2650286
>gb|AC091226.3| Drosophila melanogaster 3L BAC RP98-3I13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165518 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 cgtcgccggcgtcgtcctcgg 161 ||||||||||||||||||||| Sbjct: 141453 cgtcgccggcgtcgtcctcgg 141473
>gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167638 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 cgtcgccggcgtcgtcctcgg 161 ||||||||||||||||||||| Sbjct: 9564 cgtcgccggcgtcgtcctcgg 9584
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 140 ccgtcgccggcgtcgtcctcggcgtcgtc 168 ||||||||| || |||||||||||||||| Sbjct: 19857701 ccgtcgccgtcgccgtcctcggcgtcgtc 19857729 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 ccgtcgccggcgtcgtcctcg 160 ||||||||||||||||||||| Sbjct: 12859243 ccgtcgccggcgtcgtcctcg 12859263 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 144 cgccggcgtcgtcctcggcgtcgtc 168 |||||||||||||| |||||||||| Sbjct: 5446902 cgccggcgtcgtccgcggcgtcgtc 5446878
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 cgccggcgtcgtcctcggcgt 164 ||||||||||||||||||||| Sbjct: 4556679 cgccggcgtcgtcctcggcgt 4556699
>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0508B05 Length = 166165 Score = 42.1 bits (21), Expect = 0.75 Identities = 27/29 (93%) Strand = Plus / Plus Query: 140 ccgtcgccggcgtcgtcctcggcgtcgtc 168 ||||||||| || |||||||||||||||| Sbjct: 35302 ccgtcgccgtcgccgtcctcggcgtcgtc 35330
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1524_D08 Length = 143046 Score = 42.1 bits (21), Expect = 0.75 Identities = 24/25 (96%) Strand = Plus / Minus Query: 144 cgccggcgtcgtcctcggcgtcgtc 168 |||||||||||||| |||||||||| Sbjct: 100483 cgccggcgtcgtccgcggcgtcgtc 100459
>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A18 Length = 176755 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 ccgtcgccggcgtcgtcctcg 160 ||||||||||||||||||||| Sbjct: 78725 ccgtcgccggcgtcgtcctcg 78745
>dbj|AK070852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065A17, full insert sequence Length = 1188 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 ccgtcgccggcgtcgtcctcg 160 ||||||||||||||||||||| Sbjct: 335 ccgtcgccggcgtcgtcctcg 355
>dbj|AK067188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094K24, full insert sequence Length = 1112 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 ccgtcgccggcgtcgtcctcg 160 ||||||||||||||||||||| Sbjct: 235 ccgtcgccggcgtcgtcctcg 255
>gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48 of 83 of the complete sequence Length = 282116 Score = 42.1 bits (21), Expect = 0.75 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 cgtcgccggcgtcgtcctcgg 161 ||||||||||||||||||||| Sbjct: 205276 cgtcgccggcgtcgtcctcgg 205296
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 9202 gcgtcgtcctcgtcgtcgtcctcc 9179
>ref|XM_475588.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1080 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 147 cggcgtcgtcctcggcgtcgtcctccga 174 |||||||||| ||||||||||| ||||| Sbjct: 506 cggcgtcgtcgtcggcgtcgtcatccga 533
>ref|NM_191085.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 327 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 254 gcgtcgtcctcgtcgtcgtcctcc 231
>ref|XM_478415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 888 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ccgtcgccggcgtcgtcctc 159 |||||||||||||||||||| Sbjct: 586 ccgtcgccggcgtcgtcctc 567
>ref|XM_472278.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 585 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgtcgccggcgtcgtcctcg 160 |||||||||||||||||||| Sbjct: 324 cgtcgccggcgtcgtcctcg 305
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tcgccggcgtcgtcctcggc 162 |||||||||||||||||||| Sbjct: 611243 tcgccggcgtcgtcctcggc 611262
>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04, complete sequence Length = 133271 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cggcgtcgtcctcggcgtcgtcctccga 174 |||||||||| ||||||||||| ||||| Sbjct: 33054 cggcgtcgtcgtcggcgtcgtcatccga 33027
>gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029K08, complete sequence Length = 136687 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 141 cgtcgccggcgtcgtcctcggcgtcgtc 168 ||||||||||||||||||| ||||||| Sbjct: 69716 cgtcgccggcgtcgtcctcttcgtcgtc 69689
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgtcgccggcgtcgtcctcg 160 |||||||||||||||||||| Sbjct: 179052 cgtcgccggcgtcgtcctcg 179033
>ref|XM_807367.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511293.20) partial mRNA Length = 5445 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 149 gcgtcgtcctcggcgtcgtcctccgagt 176 |||||||| ||| ||||||||||||||| Sbjct: 5399 gcgtcgtcgtcgtcgtcgtcctccgagt 5372
>ref|XM_723634.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07764) partial mRNA Length = 564 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 151 gtcgtcctcggcgtcgtcctccgagttc 178 ||||||||||||||||||| ||| |||| Sbjct: 271 gtcgtcctcggcgtcgtccgccgggttc 298
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 cgtcgccggcgtcgtcctcg 160 |||||||||||||||||||| Sbjct: 101076 cgtcgccggcgtcgtcctcg 101095
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 cctccgagttcgagttcacggtga 191 ||||||||||| |||||||||||| Sbjct: 1365085 cctccgagttcaagttcacggtga 1365108
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 cgtcgccggcgtcgtcctcg 160 |||||||||||||||||||| Sbjct: 19009151 cgtcgccggcgtcgtcctcg 19009170
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 18153970 gcgtcgtcctcgtcgtcgtcctcc 18153993
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 141 cgtcgccggcgtcgtcctcggcgtcgtc 168 ||||||||||||||||||| ||||||| Sbjct: 21411966 cgtcgccggcgtcgtcctcttcgtcgtc 21411939
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ccgtcgccggcgtcgtcctc 159 |||||||||||||||||||| Sbjct: 19834118 ccgtcgccggcgtcgtcctc 19834137
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 34793969 gcgtcgtcctcgtcgtcgtcctcc 34793946
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 151 gtcgtcctcggcgtcgtcctccgagttc 178 ||||||||||||||||||| ||| |||| Sbjct: 246963 gtcgtcctcggcgtcgtccgccgggttc 246936
>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1148D12 Length = 132060 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 109209 gcgtcgtcctcgtcgtcgtcctcc 109186
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 ||||||||||| |||||||||||| Sbjct: 5822728 gcgtcgtcctccgcgtcgtcctcc 5822705 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 cgtcgtcctcggcgtcgtcc 169 |||||||||||||||||||| Sbjct: 3457439 cgtcgtcctcggcgtcgtcc 3457458
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454H12 Length = 161004 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 53141 gcgtcgtcctcgtcgtcgtcctcc 53118
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 tcgccggcgtcgtcctcggcgtcg 166 |||||||||||| ||||||||||| Sbjct: 6749687 tcgccggcgtcggcctcggcgtcg 6749664
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 ccgtcgccggcgtcgtcctc 159 |||||||||||||||||||| Sbjct: 74277 ccgtcgccggcgtcgtcctc 74296
>dbj|AK120219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041B17, full insert sequence Length = 2573 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 1926 gcgtcgtcctcgtcgtcgtcctcc 1949
>dbj|AK119999.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-H05, full insert sequence Length = 730 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 cgtcgccggcgtcgtcctcg 160 |||||||||||||||||||| Sbjct: 309 cgtcgccggcgtcgtcctcg 290
>dbj|AK102726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105M03, full insert sequence Length = 938 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ccgtcgccggcgtcgtcctc 159 |||||||||||||||||||| Sbjct: 590 ccgtcgccggcgtcgtcctc 571
>dbj|AK069570.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025A03, full insert sequence Length = 889 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ccgtcgccggcgtcgtcctc 159 |||||||||||||||||||| Sbjct: 587 ccgtcgccggcgtcgtcctc 568
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 133 gtcgttcccgtcgccggcgtcgtcctcg 160 ||||| |||||||||||||||| ||||| Sbjct: 2736235 gtcgtccccgtcgccggcgtcgccctcg 2736208
>emb|Y16424.1|NGY16424 Nectria galligena small subunit rRNA gene, intron (isolate NI 109) Length = 1423 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 141 cgtcgccggcgtcgtcctcggcgtcgtc 168 ||||| |||||||||| ||||||||||| Sbjct: 945 cgtcgtcggcgtcgtcgtcggcgtcgtc 972
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ggccaaggacgccggctacg 122 |||||||||||||||||||| Sbjct: 1821831 ggccaaggacgccggctacg 1821812
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 141 cgtcgccggcgtcgtcctcggcgtcgtc 168 ||||||||||||||||||| ||||||| Sbjct: 21722165 cgtcgccggcgtcgtcctcttcgtcgtc 21722138
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 18080291 gcgtcgtcctcgtcgtcgtcctcc 18080314
>emb|AL845343.5|CNS08CB5 Oryza sativa chromosome 12, . BAC OSJNBa0028O09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155927 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 gcgtcgtcctcggcgtcgtcctcc 172 |||||||||||| ||||||||||| Sbjct: 107648 gcgtcgtcctcgtcgtcgtcctcc 107671
>gb|AC105262.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1489_G03, complete sequence Length = 107870 Score = 40.1 bits (20), Expect = 3.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 147 cggcgtcgtcctcggcgtcgtcctccga 174 |||||||||| ||||||||||| ||||| Sbjct: 85369 cggcgtcgtcgtcggcgtcgtcatccga 85342
>gb|M86741.1|MSGCATPXDS Mycobacterium intracellulare (MI85) catalase-peroxidase gene, complete cds Length = 2452 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ggccaaggacgccggctacg 122 |||||||||||||||||||| Sbjct: 1746 ggccaaggacgccggctacg 1765 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,103,664 Number of Sequences: 3902068 Number of extensions: 1103664 Number of successful extensions: 27159 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 26149 Number of HSP's gapped (non-prelim): 1007 length of query: 232 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 210 effective length of database: 17,147,199,772 effective search space: 3600911952120 effective search space used: 3600911952120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
