ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet06d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CDI8_ARATH (P42735) Cadmium-induced protein AS8 84 2e-16
2GRLF1_CANFA (P83509) Glucocorticoid receptor DNA-binding factor ... 32 0.95
3EMAL_DROME (Q9VUI3) Echinoderm microtubule-associated protein-li... 30 3.6
4MMP11_HUMAN (P24347) Stromelysin-3 precursor (EC 3.4.24.-) (ST3)... 29 4.7
5GRLF1_MOUSE (Q91YM2) Glucocorticoid receptor DNA-binding factor ... 29 6.2

>CDI8_ARATH (P42735) Cadmium-induced protein AS8|
          Length = 171

 Score = 83.6 bits (205), Expect = 2e-16
 Identities = 41/75 (54%), Positives = 48/75 (64%)
 Frame = +1

Query: 223 MIIKGMLGRYERWNPVHPTXXXXXXXXXXXXXXXXXXXXXXXEVIGYVGAGCGVGFSVGI 402
           MIIKG+  RYE+WNPVHPT                       EVIGYVGAGCGVGFSVGI
Sbjct: 4   MIIKGIFRRYEKWNPVHPTYGAFWGMGIGIGCGVGWGPGFGPEVIGYVGAGCGVGFSVGI 63

Query: 403 TLAGVGVGLPQHGII 447
           TLAG+G+GLP + ++
Sbjct: 64  TLAGLGIGLPTNFLL 78



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>GRLF1_CANFA (P83509) Glucocorticoid receptor DNA-binding factor 1 (Rho GAP p190A)|
            (p190-A)
          Length = 1500

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 53   FLHSSRRCSCPSPTKSTNPRPQ-PIQTLLPPRLQ 151
            FL S+   S PSP +S  P PQ P+Q LLP +LQ
Sbjct: 1462 FLTSTPVTSQPSPPQSPPPTPQSPMQALLPSQLQ 1495



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>EMAL_DROME (Q9VUI3) Echinoderm microtubule-associated protein-like CG13466|
          Length = 819

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
 Frame = -3

Query: 165 IAPGICSRGGNRVWIGWGRGLVDLVG---------LGHEQRRLLWRKNTLVWS 34
           I  G   R   +V  G GR L  L            GH++   LWRKN L+W+
Sbjct: 529 ILEGSLQRRFTQVVFGHGRQLWGLAAHPDDELYATAGHDKHVALWRKNKLIWT 581



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>MMP11_HUMAN (P24347) Stromelysin-3 precursor (EC 3.4.24.-) (ST3) (SL-3) (Matrix|
           metalloproteinase-11) (MMP-11)
          Length = 488

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = +2

Query: 47  VFFLHSSRRC---------SCPSPTKSTNPRPQPIQTLLPPRLQMP 157
           V  LH+ RR          S P+P  +T   P+P  +L PPR  +P
Sbjct: 38  VHHLHAERRGPQPWHAALPSSPAPAPATQEAPRPASSLRPPRCGVP 83



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>GRLF1_MOUSE (Q91YM2) Glucocorticoid receptor DNA-binding factor 1 (Fragment)|
          Length = 1337

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 53   FLHSSRRCSCPSPTKSTNPRPQ-PIQTLLPPRLQ 151
            FL S+   S PSP +S  P PQ P+Q LL  +LQ
Sbjct: 1299 FLTSTPATSQPSPPQSPPPTPQSPMQPLLSSQLQ 1332


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,373,277
Number of Sequences: 219361
Number of extensions: 542197
Number of successful extensions: 2497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2454
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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