ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet06d01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04, complete sequence Length = 164882 Score = 113 bits (57), Expect = 5e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 291 ttctacctcttcgcgtcgcggacggacgccgcactgctgctcagcgccaacatggtgttc 350 |||||| | ||| |||||||||||||| | || |||||| ||||||||| ||||| |||| Sbjct: 128942 ttctacatgttctcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttc 129001 Query: 351 acggcggggaagcacaacgggagcgccgtcgccgtgttcgccagggacgccatcctcgac 410 ||||||||| |||| ||| ||||||| | ||| ||||||||||||||||||||||| Sbjct: 129002 acggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatcctcgac 129061 Query: 411 agcgtcagggagctgccggttgtcggcggcaccggcg 447 || |||||||||||||| ||||||||| |||||| Sbjct: 129062 gaggtgagggagctgccggtggtcggcggcgccggcg 129098 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 90 acgacgacgcacctccggttctacatgcacgaca 123 |||||||||||| ||||||||||||||||||| Sbjct: 128723 acgacgacgcacacgcggttctacatgcacgaca 128756
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 113 bits (57), Expect = 5e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 291 ttctacctcttcgcgtcgcggacggacgccgcactgctgctcagcgccaacatggtgttc 350 |||||| | ||| |||||||||||||| | || |||||| ||||||||| ||||| |||| Sbjct: 5919058 ttctacatgttctcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttc 5919117 Query: 351 acggcggggaagcacaacgggagcgccgtcgccgtgttcgccagggacgccatcctcgac 410 ||||||||| |||| ||| ||||||| | ||| ||||||||||||||||||||||| Sbjct: 5919118 acggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatcctcgac 5919177 Query: 411 agcgtcagggagctgccggttgtcggcggcaccggcg 447 || |||||||||||||| ||||||||| |||||| Sbjct: 5919178 gaggtgagggagctgccggtggtcggcggcgccggcg 5919214 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 413 cgtcagggagctgccggttgtcggcggcaccggcgccttccgc 455 |||| ||||| ||||||| ||||||||||||||||||||||| Sbjct: 3975696 cgtccgggagatgccggtgatcggcggcaccggcgccttccgc 3975738 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 90 acgacgacgcacctccggttctacatgcacgaca 123 |||||||||||| ||||||||||||||||||| Sbjct: 5918839 acgacgacgcacacgcggttctacatgcacgaca 5918872 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 gtcggcggcaccggcgccttccgc 455 ||||||||||||||||| |||||| Sbjct: 3914569 gtcggcggcaccggcgcgttccgc 3914546
>dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D10, full insert sequence Length = 885 Score = 113 bits (57), Expect = 5e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 291 ttctacctcttcgcgtcgcggacggacgccgcactgctgctcagcgccaacatggtgttc 350 |||||| | ||| |||||||||||||| | || |||||| ||||||||| ||||| |||| Sbjct: 370 ttctacatgttctcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttc 429 Query: 351 acggcggggaagcacaacgggagcgccgtcgccgtgttcgccagggacgccatcctcgac 410 ||||||||| |||| ||| ||||||| | ||| ||||||||||||||||||||||| Sbjct: 430 acggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatcctcgac 489 Query: 411 agcgtcagggagctgccggttgtcggcggcaccggcg 447 || |||||||||||||| ||||||||| |||||| Sbjct: 490 gaggtgagggagctgccggtggtcggcggcgccggcg 526 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 90 acgacgacgcacctccggttctacatgcacgaca 123 |||||||||||| ||||||||||||||||||| Sbjct: 151 acgacgacgcacacgcggttctacatgcacgaca 184
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 113 bits (57), Expect = 5e-22 Identities = 132/157 (84%) Strand = Plus / Plus Query: 291 ttctacctcttcgcgtcgcggacggacgccgcactgctgctcagcgccaacatggtgttc 350 |||||| | ||| |||||||||||||| | || |||||| ||||||||| ||||| |||| Sbjct: 5985535 ttctacatgttctcgtcgcggacggactcggcgctgctgttcagcgccaccatggagttc 5985594 Query: 351 acggcggggaagcacaacgggagcgccgtcgccgtgttcgccagggacgccatcctcgac 410 ||||||||| |||| ||| ||||||| | ||| ||||||||||||||||||||||| Sbjct: 5985595 acggcgggggtgcaccgcggcggcgccgtgtcggtgctcgccagggacgccatcctcgac 5985654 Query: 411 agcgtcagggagctgccggttgtcggcggcaccggcg 447 || |||||||||||||| ||||||||| |||||| Sbjct: 5985655 gaggtgagggagctgccggtggtcggcggcgccggcg 5985691 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 413 cgtcagggagctgccggttgtcggcggcaccggcgccttccgc 455 |||| ||||| ||||||| ||||||||||||||||||||||| Sbjct: 3984390 cgtccgggagatgccggtgatcggcggcaccggcgccttccgc 3984432 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 374 cgccgtcgccgtgttcgccaggga 397 |||||||||||||||||||||||| Sbjct: 16731379 cgccgtcgccgtgttcgccaggga 16731356 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Plus Query: 90 acgacgacgcacctccggttctacatgcacgaca 123 |||||||||||| ||||||||||||||||||| Sbjct: 5985316 acgacgacgcacacgcggttctacatgcacgaca 5985349 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 gtcggcggcaccggcgccttccgc 455 ||||||||||||||||| |||||| Sbjct: 3923263 gtcggcggcaccggcgcgttccgc 3923240
>gb|AC134044.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019D06 map S10616A, complete sequence Length = 182486 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 413 cgtcagggagctgccggttgtcggcggcaccggcgccttccgc 455 |||| ||||| ||||||| ||||||||||||||||||||||| Sbjct: 103322 cgtccgggagatgccggtgatcggcggcaccggcgccttccgc 103364 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 gtcggcggcaccggcgccttccgc 455 ||||||||||||||||| |||||| Sbjct: 42195 gtcggcggcaccggcgcgttccgc 42172
>dbj|AK060077.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B12, full insert sequence Length = 981 Score = 54.0 bits (27), Expect = 4e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 413 cgtcagggagctgccggttgtcggcggcaccggcgccttccgc 455 |||| ||||| ||||||| ||||||||||||||||||||||| Sbjct: 495 cgtccgggagatgccggtgatcggcggcaccggcgccttccgc 537
>gb|AC148759.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0030K09, complete sequence Length = 143355 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 374 cgccgtcgccgtgttcgccaggga 397 |||||||||||||||||||||||| Sbjct: 101283 cgccgtcgccgtgttcgccaggga 101260
>gb|AC136378.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0047D03, complete sequence Length = 126165 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 374 cgccgtcgccgtgttcgccaggga 397 |||||||||||||||||||||||| Sbjct: 18669 cgccgtcgccgtgttcgccaggga 18646
>gb|AC159030.2| Pan troglodytes BAC clone CH251-399F13 from chromosome unknown, complete sequence Length = 176914 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 404 cctcgacagcgtcagggagctgc 426 ||||||||||||||||||||||| Sbjct: 123575 cctcgacagcgtcagggagctgc 123553
>emb|AL132796.4|CNS01DTL Human chromosome 14 DNA sequence BAC R-1127D7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 161322 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 404 cctcgacagcgtcagggagctgc 426 ||||||||||||||||||||||| Sbjct: 120672 cctcgacagcgtcagggagctgc 120694
>ref|NM_196360.1| Oryza sativa (japonica cultivar-group) putative disease resistance protein (OSJNBb0058B20.4), mRNA Length = 486 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 92 gacgacgcacctccggttctacatgcacga 121 |||||||||||||| |||||||||||||| Sbjct: 102 gacgacgcacctccacttctacatgcacga 131 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 419 ggagctgccggttgtcggcggcaccggcgccttccg 454 ||||| |||||| ||||||||||| ||||| ||||| Sbjct: 416 ggagcggccggtggtcggcggcacgggcgcgttccg 451
>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015K03, complete sequence Length = 89172 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 88 ccacgacgacgcacctccggttctacatgcacga 121 |||||||||||||||||| |||||||| ||||| Sbjct: 54871 ccacgacgacgcacctccatttctacatccacga 54838 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 90 acgacgacgcacctccggttctacatgcacga 121 |||||||||||||||| |||||||| ||||| Sbjct: 60516 acgacgacgcacctccacttctacatccacga 60485
>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08, complete sequence Length = 144593 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 92 gacgacgcacctccggttctacatgcacga 121 |||||||||||||| |||||||||||||| Sbjct: 7116 gacgacgcacctccacttctacatgcacga 7087 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 419 ggagctgccggttgtcggcggcaccggcgccttccg 454 ||||| |||||| ||||||||||| ||||| ||||| Sbjct: 6802 ggagcggccggtggtcggcggcacgggcgcgttccg 6767
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 88 ccacgacgacgcacctccggttctacatgcacga 121 |||||||||||||||||| |||||||| ||||| Sbjct: 16060653 ccacgacgacgcacctccatttctacatccacga 16060620 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 90 acgacgacgcacctccggttctacatgcacga 121 |||||||||||||||| |||||||| ||||| Sbjct: 16066298 acgacgacgcacctccacttctacatccacga 16066267
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 312 acggacgccgcactgctgctca 333 |||||||||||||||||||||| Sbjct: 1222500 acggacgccgcactgctgctca 1222521
>gb|AE005740.1| Caulobacter crescentus CB15 section 66 of 359 of the complete genome Length = 11134 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 377 cgtcgccgtgttcgccagggacgcca 402 ||||||||||||||||| |||||||| Sbjct: 3650 cgtcgccgtgttcgccaaggacgcca 3625
>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0058B20 from chromosome 10, complete sequence Length = 156232 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 92 gacgacgcacctccggttctacatgcacga 121 |||||||||||||| |||||||||||||| Sbjct: 12650 gacgacgcacctccacttctacatgcacga 12679 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Plus Query: 419 ggagctgccggttgtcggcggcaccggcgccttccg 454 ||||| |||||| ||||||||||| ||||| ||||| Sbjct: 12964 ggagcggccggtggtcggcggcacgggcgcgttccg 12999
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 92 gacgacgcacctccggttctacatgcacga 121 |||||||||||||| |||||||||||||| Sbjct: 12908200 gacgacgcacctccacttctacatgcacga 12908171 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 419 ggagctgccggttgtcggcggcaccggcgccttccg 454 ||||| |||||| ||||||||||| ||||| ||||| Sbjct: 12907886 ggagcggccggtggtcggcggcacgggcgcgttccg 12907851
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.39 Identities = 31/34 (91%) Strand = Plus / Minus Query: 88 ccacgacgacgcacctccggttctacatgcacga 121 |||||||||||||||||| |||||||| ||||| Sbjct: 16055186 ccacgacgacgcacctccatttctacatccacga 16055153 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 90 acgacgacgcacctccggttctacatgcacga 121 |||||||||||||||| |||||||| ||||| Sbjct: 16060831 acgacgacgcacctccacttctacatccacga 16060800
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 ggcggaggcgccgggcgcggcc 152 |||||||||||||||||||||| Sbjct: 5309903 ggcggaggcgccgggcgcggcc 5309882 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 cggcggcaccggcgccttcc 453 |||||||||||||||||||| Sbjct: 5693914 cggcggcaccggcgccttcc 5693895 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gccgggcgcggccacggcgg 159 |||||||||||||||||||| Sbjct: 4979664 gccgggcgcggccacggcgg 4979645
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 ggcgccgggcgcggccacggcg 158 |||||||||||||||||||||| Sbjct: 2280599 ggcgccgggcgcggccacggcg 2280578 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 ggcgctcgtcgccgcggtgg 81 |||||||||||||||||||| Sbjct: 126931 ggcgctcgtcgccgcggtgg 126912
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 92 gacgacgcacctccggttctacatgcacga 121 |||||||||||||| |||||||||||||| Sbjct: 12915540 gacgacgcacctccacttctacatgcacga 12915511 Score = 40.1 bits (20), Expect = 6.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 419 ggagctgccggttgtcggcggcaccggcgccttccg 454 ||||| |||||| ||||||||||| ||||| ||||| Sbjct: 12915226 ggagcggccggtggtcggcggcacgggcgcgttccg 12915191
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 387 ttcgccagggacgccatcctcgacagcgt 415 |||||||| |||||||| ||||||||||| Sbjct: 5854292 ttcgccagcgacgccatgctcgacagcgt 5854320
>gb|AY722015.1| Pseudomonas syringae pv. syringae clone 17.15 genomic sequence Length = 862 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 387 ttcgccagggacgccatcctcgacagcgt 415 |||||||| |||||||| ||||||||||| Sbjct: 669 ttcgccagcgacgccatgctcgacagcgt 697
>ref|XM_502111.1| Yarrowia lipolytica CLIB122, YALI0C21890g predicted mRNA Length = 1203 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gctccagccacgacgacgcac 101 ||||||||||||||||||||| Sbjct: 377 gctccagccacgacgacgcac 397
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 394 gggacgccatcctcgacagcg 414 ||||||||||||||||||||| Sbjct: 3272200 gggacgccatcctcgacagcg 3272220
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 gacgccatcctcgacagcgtc 416 ||||||||||||||||||||| Sbjct: 4777894 gacgccatcctcgacagcgtc 4777914
>dbj|AK073181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001M05, full insert sequence Length = 964 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 gcggccacggcggtgcgcgtc 167 ||||||||||||||||||||| Sbjct: 524 gcggccacggcggtgcgcgtc 504
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 gctccagccacgacgacgcac 101 ||||||||||||||||||||| Sbjct: 2930143 gctccagccacgacgacgcac 2930163
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 427 cggttgtcggcggcaccggcgcct 450 |||||||||||| ||||||||||| Sbjct: 1194936 cggttgtcggcgtcaccggcgcct 1194913
>ref|XM_482075.1| Oryza sativa (japonica cultivar-group), mRNA Length = 801 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 417 agggagctgccggttgtcggcggcaccggcgc 448 |||||||| |||| ||||||||||||||||| Sbjct: 464 agggagctcgcggtggtcggcggcaccggcgc 495
>ref|XM_476383.1| Oryza sativa (japonica cultivar-group), mRNA Length = 821 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 414 gtcagggagctgccggttgtcggcggca 441 |||||||||||| |||| |||||||||| Sbjct: 447 gtcagggagctggcggtggtcggcggca 474
>ref|XM_476382.1| Oryza sativa (japonica cultivar-group), mRNA Length = 779 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 414 gtcagggagctgccggttgtcggcggca 441 |||||||||||| |||| |||||||||| Sbjct: 214 gtcagggagctggcggtggtcggcggca 187
>ref|NM_184603.1| Oryza sativa (japonica cultivar-group), mRNA Length = 537 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 90 acgacgacgcacctccggttctacatgcacga 121 |||||||||||||||| |||||||| ||||| Sbjct: 82 acgacgacgcacctccacttctacatccacga 113
>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H03, complete sequence Length = 185881 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 gcgccgtcgccgtgttcgcc 392 |||||||||||||||||||| Sbjct: 100507 gcgccgtcgccgtgttcgcc 100488
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tggcgctcgtcgccgcggtg 80 |||||||||||||||||||| Sbjct: 418391 tggcgctcgtcgccgcggtg 418410
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 gcgctcgtcgccgcggtggc 82 |||||||||||||||||||| Sbjct: 3090093 gcgctcgtcgccgcggtggc 3090112
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tggcgctcgtcgccgcggtg 80 |||||||||||||||||||| Sbjct: 3265959 tggcgctcgtcgccgcggtg 3265978
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 cgctgcccaacgaccccaccaacc 207 |||||||||| ||||||||||||| Sbjct: 1517818 cgctgcccaatgaccccaccaacc 1517841
>gb|AF480884.1| Chimpanzee cytomegalovirus, complete genome Length = 241087 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 ggcgccgggcgcggccacggcggt 160 ||||||||||||||| |||||||| Sbjct: 215031 ggcgccgggcgcggcgacggcggt 215054
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 caacatggtgttcacggcgg 357 |||||||||||||||||||| Sbjct: 2385082 caacatggtgttcacggcgg 2385063
>ref|XM_504243.1| Yarrowia lipolytica CLIB122, YALI0E21802g predicted mRNA Length = 2601 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 accatcgacgacgctctcac 244 |||||||||||||||||||| Sbjct: 31 accatcgacgacgctctcac 50
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 cggacgccgcactgctgctc 332 |||||||||||||||||||| Sbjct: 81811 cggacgccgcactgctgctc 81792
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ggacgccgcactgctgctca 333 |||||||||||||||||||| Sbjct: 1559738 ggacgccgcactgctgctca 1559719
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 gacgccatcctcgacagcgt 415 |||||||||||||||||||| Sbjct: 67077 gacgccatcctcgacagcgt 67096
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tggcgctcgtcgccgcggtg 80 |||||||||||||||||||| Sbjct: 2995823 tggcgctcgtcgccgcggtg 2995842
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ggacgccatcctcgacagcg 414 |||||||||||||||||||| Sbjct: 1853337 ggacgccatcctcgacagcg 1853318 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 ggacgccatcctcgacagcg 414 |||||||||||||||||||| Sbjct: 1818003 ggacgccatcctcgacagcg 1817984
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cgacgacgcacctccggttc 110 |||||||||||||||||||| Sbjct: 787643 cgacgacgcacctccggttc 787624
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 ggcggcaccggcgccttccg 454 |||||||||||||||||||| Sbjct: 1639289 ggcggcaccggcgccttccg 1639270
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 417 agggagctgccggttgtcggcggcaccggcgc 448 |||||||| |||| ||||||||||||||||| Sbjct: 17606793 agggagctcgcggtggtcggcggcaccggcgc 17606824
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 131 ggcggaggcgccgggcgcggccacggcg 158 ||||| ||||||| |||||||||||||| Sbjct: 20551233 ggcggcggcgccgcgcgcggccacggcg 20551206 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 414 gtcagggagctgccggttgtcggcggca 441 |||||||||||| |||| |||||||||| Sbjct: 383797 gtcagggagctggcggtggtcggcggca 383824
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 gcgccgtcgccgtgttcgcc 392 |||||||||||||||||||| Sbjct: 10715907 gcgccgtcgccgtgttcgcc 10715888
>gb|AF135182.3| Serratia entomophila plasmid pADAP, partial sequence Length = 106143 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 cgacagcgtcagggagctgc 426 |||||||||||||||||||| Sbjct: 49859 cgacagcgtcagggagctgc 49878
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ggttgtcggcggcaccggcg 447 |||||||||||||||||||| Sbjct: 28543 ggttgtcggcggcaccggcg 28562
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.2 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 136 aggcgccgggcgcggccacggc-ggtgcgcgtcgtc 170 ||||||||||||||||| |||| ||||||| ||||| Sbjct: 7459479 aggcgccgggcgcggccgcggcaggtgcgcctcgtc 7459444
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 317 cgccgcactgctgctcagcgccaacatggtgt 348 ||||||||||||| |||||| || |||||||| Sbjct: 5309685 cgccgcactgctgttcagcgtcatcatggtgt 5309654 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gctgccggttgtcggcggca 441 |||||||||||||||||||| Sbjct: 4301072 gctgccggttgtcggcggca 4301091
>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1317D11 Length = 135043 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 414 gtcagggagctgccggttgtcggcggca 441 |||||||||||| |||| |||||||||| Sbjct: 108035 gtcagggagctggcggtggtcggcggca 108062
>dbj|AP005169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077J18 Length = 180944 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 131 ggcggaggcgccgggcgcggccacggcg 158 ||||| ||||||| |||||||||||||| Sbjct: 132343 ggcggcggcgccgcgcgcggccacggcg 132316
>dbj|AP004990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0007H12 Length = 150881 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 131 ggcggaggcgccgggcgcggccacggcg 158 ||||| ||||||| |||||||||||||| Sbjct: 42312 ggcggcggcgccgcgcgcggccacggcg 42285
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0436B06 Length = 148947 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 417 agggagctgccggttgtcggcggcaccggcgc 448 |||||||| |||| ||||||||||||||||| Sbjct: 83443 agggagctcgcggtggtcggcggcaccggcgc 83474
>dbj|AK108186.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-B09, full insert sequence Length = 801 Score = 40.1 bits (20), Expect = 6.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 417 agggagctgccggttgtcggcggcaccggcgc 448 |||||||| |||| ||||||||||||||||| Sbjct: 464 agggagctcgcggtggtcggcggcaccggcgc 495
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 gcgcggccacggcggtgcgc 164 |||||||||||||||||||| Sbjct: 4651925 gcgcggccacggcggtgcgc 4651906
>dbj|AK065027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001G12, full insert sequence Length = 779 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 414 gtcagggagctgccggttgtcggcggca 441 |||||||||||| |||| |||||||||| Sbjct: 214 gtcagggagctggcggtggtcggcggca 187
>dbj|AK062751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G03, full insert sequence Length = 820 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 414 gtcagggagctgccggttgtcggcggca 441 |||||||||||| |||| |||||||||| Sbjct: 447 gtcagggagctggcggtggtcggcggca 474
>gb|AY107059.1| Zea mays PCO097556 mRNA sequence Length = 607 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 gcggcaccggcgccttccgc 455 |||||||||||||||||||| Sbjct: 230 gcggcaccggcgccttccgc 211
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 tggcgctcgtcgccgcggtg 80 |||||||||||||||||||| Sbjct: 3480225 tggcgctcgtcgccgcggtg 3480244 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 cgcggccacggcggtgcgcg 165 |||||||||||||||||||| Sbjct: 3365897 cgcggccacggcggtgcgcg 3365878
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 accatcgacgacgctctcac 244 |||||||||||||||||||| Sbjct: 2576406 accatcgacgacgctctcac 2576387
>gb|U17568.1|GGU17568 Gaeumannomyces graminis avenacinase mRNA, partial cds Length = 1916 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cggcggaggcgccgggcgcg 149 |||||||||||||||||||| Sbjct: 1773 cggcggaggcgccgggcgcg 1754
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cgacgacgcacctccggttc 110 |||||||||||||||||||| Sbjct: 833224 cgacgacgcacctccggttc 833243 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,052,270 Number of Sequences: 3902068 Number of extensions: 3052270 Number of successful extensions: 57456 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 53722 Number of HSP's gapped (non-prelim): 3735 length of query: 457 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 435 effective length of database: 17,147,199,772 effective search space: 7459031900820 effective search space used: 7459031900820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
