| Clone Name | baet06c02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083K22, full insert sequence Length = 1746 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Plus Query: 193 ccggaggacgcggcggaagggcctcgtggaggccgtcggcaacacgcccctcatccgcat 252 |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 143 ccggcggacgcggcggaagggcctcgtggaggccatcggaaacacgcccctcatccgcat 202 Query: 253 caacagcctctccgacgccaccgggtgcgagattctggggaaggccgaatttctgaaccc 312 ||||||||||||||||||||| ||||||||||| |||||||||||||| || |||| || Sbjct: 203 caacagcctctccgacgccacagggtgcgagatcctggggaaggccgagttcttgaatcc 262 Query: 313 gggaggcagcgtgaaggaccgcgtggcggtgaagatcatcgaggaggctctgaaatctgg 372 |||||||||||||||||||| ||||| || ||||||||||| ||||||||| ||||||| Sbjct: 263 cggaggcagcgtgaaggaccgtgtggcagttaagatcatcgaagaggctctggaatctgg 322 Query: 373 gaatcttgtctgtggtggtgtagtaacggaagggagtgc 411 ||||| ||||||||||| |||||| || |||||||| Sbjct: 323 tgatcttctctgtggtggtacagtaacagaggggagtgc 361 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gatggcggctgcgacggcggc 87 ||||||||||||||||||||| Sbjct: 11 gatggcggctgcgacggcggc 31
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 149 bits (75), Expect = 8e-33 Identities = 87/91 (95%) Strand = Plus / Plus Query: 193 ccggaggacgcggcggaagggcctcgtggaggccgtcggcaacacgcccctcatccgcat 252 |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 6054062 ccggcggacgcggcggaagggcctcgtggaggccatcggaaacacgcccctcatccgcat 6054121 Query: 253 caacagcctctccgacgccaccgggtgcgag 283 ||||||||||||||||||||| ||||||||| Sbjct: 6054122 caacagcctctccgacgccacagggtgcgag 6054152 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 282 agattctggggaaggccgaatttctgaacccgggaggcagcgtgaaggaccgcgtggcgg 341 |||| |||||||||||||| || |||| || |||||||||||||||||||| ||||| | Sbjct: 6054259 agatcctggggaaggccgagttcttgaatcccggaggcagcgtgaaggaccgtgtggcag 6054318 Query: 342 tgaagatcatcgaggagg 359 | ||||||||||| |||| Sbjct: 6054319 ttaagatcatcgaagagg 6054336 Score = 46.1 bits (23), Expect = 0.091 Identities = 47/55 (85%) Strand = Plus / Plus Query: 357 aggctctgaaatctgggaatcttgtctgtggtggtgtagtaacggaagggagtgc 411 |||||||| ||||||| ||||| ||||||||||| |||||| || |||||||| Sbjct: 6055262 aggctctggaatctggtgatcttctctgtggtggtacagtaacagaggggagtgc 6055316 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 325 gaaggaccgcgtggcggtgaagatcatcg 353 ||||||| |||||| |||||||||||||| Sbjct: 35221003 gaaggacggcgtggaggtgaagatcatcg 35220975 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gatggcggctgcgacggcggc 87 ||||||||||||||||||||| Sbjct: 6053930 gatggcggctgcgacggcggc 6053950
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 149 bits (75), Expect = 8e-33 Identities = 87/91 (95%) Strand = Plus / Plus Query: 193 ccggaggacgcggcggaagggcctcgtggaggccgtcggcaacacgcccctcatccgcat 252 |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 6053275 ccggcggacgcggcggaagggcctcgtggaggccatcggaaacacgcccctcatccgcat 6053334 Query: 253 caacagcctctccgacgccaccgggtgcgag 283 ||||||||||||||||||||| ||||||||| Sbjct: 6053335 caacagcctctccgacgccacagggtgcgag 6053365 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 282 agattctggggaaggccgaatttctgaacccgggaggcagcgtgaaggaccgcgtggcgg 341 |||| |||||||||||||| || |||| || |||||||||||||||||||| ||||| | Sbjct: 6053472 agatcctggggaaggccgagttcttgaatcccggaggcagcgtgaaggaccgtgtggcag 6053531 Query: 342 tgaagatcatcgaggagg 359 | ||||||||||| |||| Sbjct: 6053532 ttaagatcatcgaagagg 6053549 Score = 46.1 bits (23), Expect = 0.091 Identities = 47/55 (85%) Strand = Plus / Plus Query: 357 aggctctgaaatctgggaatcttgtctgtggtggtgtagtaacggaagggagtgc 411 |||||||| ||||||| ||||| ||||||||||| |||||| || |||||||| Sbjct: 6054475 aggctctggaatctggtgatcttctctgtggtggtacagtaacagaggggagtgc 6054529 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 325 gaaggaccgcgtggcggtgaagatcatcg 353 ||||||| |||||| |||||||||||||| Sbjct: 35311075 gaaggacggcgtggaggtgaagatcatcg 35311047 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gatggcggctgcgacggcggc 87 ||||||||||||||||||||| Sbjct: 6053143 gatggcggctgcgacggcggc 6053163
>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11, complete sequence Length = 174865 Score = 149 bits (75), Expect = 8e-33 Identities = 87/91 (95%) Strand = Plus / Plus Query: 193 ccggaggacgcggcggaagggcctcgtggaggccgtcggcaacacgcccctcatccgcat 252 |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 47538 ccggcggacgcggcggaagggcctcgtggaggccatcggaaacacgcccctcatccgcat 47597 Query: 253 caacagcctctccgacgccaccgggtgcgag 283 ||||||||||||||||||||| ||||||||| Sbjct: 47598 caacagcctctccgacgccacagggtgcgag 47628 Score = 75.8 bits (38), Expect = 1e-10 Identities = 68/78 (87%) Strand = Plus / Plus Query: 282 agattctggggaaggccgaatttctgaacccgggaggcagcgtgaaggaccgcgtggcgg 341 |||| |||||||||||||| || |||| || |||||||||||||||||||| ||||| | Sbjct: 47735 agatcctggggaaggccgagttcttgaatcccggaggcagcgtgaaggaccgtgtggcag 47794 Query: 342 tgaagatcatcgaggagg 359 | ||||||||||| |||| Sbjct: 47795 ttaagatcatcgaagagg 47812 Score = 46.1 bits (23), Expect = 0.091 Identities = 47/55 (85%) Strand = Plus / Plus Query: 357 aggctctgaaatctgggaatcttgtctgtggtggtgtagtaacggaagggagtgc 411 |||||||| ||||||| ||||| ||||||||||| |||||| || |||||||| Sbjct: 48738 aggctctggaatctggtgatcttctctgtggtggtacagtaacagaggggagtgc 48792 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 gatggcggctgcgacggcggc 87 ||||||||||||||||||||| Sbjct: 47406 gatggcggctgcgacggcggc 47426
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 230 ggcaacacgcccctcatccgcatcaacagcctctc 264 |||||||||||| ||||||||||||||| |||||| Sbjct: 2866317 ggcaacacgcccgtcatccgcatcaacaacctctc 2866351
>gb|AC163894.2| Glomus intraradices clone JGIATSX-9F17, complete sequence Length = 37905 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 228 tcggcaacacgcccctcatccgcatcaacagcct 261 ||||||||||||||| ||||||||||||| |||| Sbjct: 6096 tcggcaacacgccccacatccgcatcaaccgcct 6129
>ref|XM_785952.1| PREDICTED: Strongylocentrotus purpuratus similar to cystathionine beta-synthase isoform 1 (LOC586159), partial mRNA Length = 238 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 228 tcggcaacacgcccctcatccgcatcaaca 257 |||| ||||||||||||||||||||||||| Sbjct: 173 tcggaaacacgcccctcatccgcatcaaca 202
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 48.1 bits (24), Expect = 0.023 Identities = 39/44 (88%) Strand = Plus / Minus Query: 272 accgggtgcgagattctggggaaggccgaatttctgaacccggg 315 ||||| |||||||| || || ||||||||||| ||||||||||| Sbjct: 358671 accggctgcgagatcctcggcaaggccgaattcctgaacccggg 358628
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 46.1 bits (23), Expect = 0.091 Identities = 26/27 (96%) Strand = Plus / Minus Query: 308 aacccgggaggcagcgtgaaggaccgc 334 |||||||| |||||||||||||||||| Sbjct: 3375376 aacccgggtggcagcgtgaaggaccgc 3375350
>gb|AY106208.1| Zea mays PCO085865 mRNA sequence Length = 1008 Score = 46.1 bits (23), Expect = 0.091 Identities = 26/27 (96%) Strand = Plus / Minus Query: 65 gcgatggcggctgcgacggcggcagga 91 ||||||||||||||| ||||||||||| Sbjct: 42 gcgatggcggctgcggcggcggcagga 16
>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds Length = 590284 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 gcggctgcgacggcggcaggagcagc 96 ||||||||| |||||||||||||||| Sbjct: 1418 gcggctgcggcggcggcaggagcagc 1443
>gb|AC096634.2| Homo sapiens chromosome 1 clone RP11-66M7, complete sequence Length = 163926 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 71 gcggctgcgacggcggcaggagcagc 96 ||||||||| |||||||||||||||| Sbjct: 120204 gcggctgcggcggcggcaggagcagc 120179
>ref|XM_470396.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1344 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 325 gaaggaccgcgtggcggtgaagatcatcg 353 ||||||| |||||| |||||||||||||| Sbjct: 705 gaaggacggcgtggaggtgaagatcatcg 733
>ref|XM_416751.1| PREDICTED: Gallus gallus similar to Cystathionine beta-synthase (Serine sulfhydrase) (Beta-thionase) (Hemoprotein H-450) (LOC418544), mRNA Length = 2103 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 314 ggaggcagcgtgaaggaccgc 334 ||||||||||||||||||||| Sbjct: 466 ggaggcagcgtgaaggaccgc 486
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 325 gaaggaccgcgtggcggtgaagatcatcg 353 ||||||| |||||| |||||||||||||| Sbjct: 99764 gaaggacggcgtggaggtgaagatcatcg 99736
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 gtggcggtgaagatcatcgag 355 ||||||||||||||||||||| Sbjct: 398801 gtggcggtgaagatcatcgag 398821
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 gatggcggctgcgacggcggc 87 ||||||||||||||||||||| Sbjct: 1349558 gatggcggctgcgacggcggc 1349538
>dbj|AK105971.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F02, full insert sequence Length = 1344 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 325 gaaggaccgcgtggcggtgaagatcatcg 353 ||||||| |||||| |||||||||||||| Sbjct: 705 gaaggacggcgtggaggtgaagatcatcg 733
>gb|BC074080.1| Danio rerio cDNA clone IMAGE:7036992, partial cds Length = 2765 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gaagatcatcgaggaggctc 362 |||||||||||||||||||| Sbjct: 1015 gaagatcatcgaggaggctc 1034
>ref|XM_586777.2| PREDICTED: Bos taurus similar to Lysophosphatidic acid receptor Edg-4 (LPA receptor 2) (LPA-2), transcript variant 1 (LOC509748), mRNA Length = 1657 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 tcttgtctgtggtggtgtag 395 |||||||||||||||||||| Sbjct: 1392 tcttgtctgtggtggtgtag 1411
>ref|XM_868004.1| PREDICTED: Bos taurus similar to Lysophosphatidic acid receptor Edg-4 (LPA receptor 2) (LPA-2), transcript variant 2 (LOC509748), mRNA Length = 1706 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 tcttgtctgtggtggtgtag 395 |||||||||||||||||||| Sbjct: 1441 tcttgtctgtggtggtgtag 1460
>ref|XM_654025.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1513.2), mRNA Length = 1287 Score = 40.1 bits (20), Expect = 5.6 Identities = 41/48 (85%) Strand = Plus / Plus Query: 263 tccgacgccaccgggtgcgagattctggggaaggccgaatttctgaac 310 ||||| || ||||||||||| || || | |||||| |||||||||||| Sbjct: 250 tccgaagcgaccgggtgcgaaatcctagcgaaggctgaatttctgaac 297
>emb|CR382289.17| Zebrafish DNA sequence from clone DKEY-161J10 in linkage group 10, complete sequence Length = 187296 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 acagcccaactgaacttctg 27 |||||||||||||||||||| Sbjct: 177016 acagcccaactgaacttctg 177035
>gb|AC139238.5| Mus musculus BAC clone RP24-403G3 from chromosome 12, complete sequence Length = 170371 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tctgggaatcttgtctgtgg 387 |||||||||||||||||||| Sbjct: 116227 tctgggaatcttgtctgtgg 116208
>ref|XM_681024.1| PREDICTED: Danio rerio similar to methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), transcript variant 1 (LOC559969), mRNA Length = 2728 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gaagatcatcgaggaggctc 362 |||||||||||||||||||| Sbjct: 1014 gaagatcatcgaggaggctc 1033
>ref|XM_703166.1| PREDICTED: Danio rerio similar to methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), transcript variant 2 (LOC559969), mRNA Length = 2668 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gaagatcatcgaggaggctc 362 |||||||||||||||||||| Sbjct: 1014 gaagatcatcgaggaggctc 1033
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 atggcggctgcgacggcggc 87 |||||||||||||||||||| Sbjct: 10087529 atggcggctgcgacggcggc 10087548
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 gaggccgtcggcaacacgcc 240 |||||||||||||||||||| Sbjct: 27716 gaggccgtcggcaacacgcc 27697
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 307 gaacccgggaggcagcgtgaaggaccgc 334 |||||||| |||||||||||||||||| Sbjct: 1485846 gaacccggccggcagcgtgaaggaccgc 1485873
>gb|AC104521.3| Homo sapiens chromosome 19 clone CTB-157M14, complete sequence Length = 20540 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tctgaacccgggaggcagcg 323 |||||||||||||||||||| Sbjct: 16267 tctgaacccgggaggcagcg 16248
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 272 accgggtgcgagattctggggaaggccgaatt 303 ||||| |||||||| ||||| ||||||||||| Sbjct: 249672 accggctgcgagatcctgggcaaggccgaatt 249703
>dbj|AP005172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0002J01 Length = 130152 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 atggcggctgcgacggcggc 87 |||||||||||||||||||| Sbjct: 60205 atggcggctgcgacggcggc 60224
>ref|XM_314118.2| Anopheles gambiae str. PEST ENSANGP00000003760 (ENSANGG00000003007), partial mRNA Length = 5601 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ggcaagagcggctccaagtt 162 |||||||||||||||||||| Sbjct: 4891 ggcaagagcggctccaagtt 4910
>emb|BX908722.4| Zebrafish DNA sequence from clone CH211-165A16 in linkage group 18, complete sequence Length = 166917 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 cctcgtggaggccgtcggcaacac 237 |||||| ||||||||||||||||| Sbjct: 127513 cctcgtcgaggccgtcggcaacac 127490
>emb|BX005105.6| Zebrafish DNA sequence from clone DKEY-37M8 in linkage group 22, complete sequence Length = 171403 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 gaagatcatcgaggaggctc 362 |||||||||||||||||||| Sbjct: 76974 gaagatcatcgaggaggctc 76955
>gb|AC007292.1|AC007292 Homo sapiens chromosome 19, cosmid R31167, complete sequence Length = 39670 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tctgaacccgggaggcagcg 323 |||||||||||||||||||| Sbjct: 2300 tctgaacccgggaggcagcg 2281 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,144,871 Number of Sequences: 3902068 Number of extensions: 3144871 Number of successful extensions: 206272 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 205563 Number of HSP's gapped (non-prelim): 709 length of query: 419 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 397 effective length of database: 17,147,199,772 effective search space: 6807438309484 effective search space used: 6807438309484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)