>VPAP_HHV11 (P10226) DNA polymerase processivity factor (Polymerase accessory|
           protein) (PAP) (DNA-binding protein UL42)
          Length = 488

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 7/112 (6%)
 Frame = +2

Query: 98  PTFLITVVVDNAFRA-------RSVVQWHGFCQGPPTGTSPADGIDGVTSTYYYYVADRS 256
           P+  +T    NA  A       +  + W G  QG P+  S A    G   T     A  +
Sbjct: 297 PSLCVTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDA 356

Query: 257 CSGRDSATMFSAGQGGEAGPIADGHACCRRANTSAGHGIASVPLKDEGRMNG 412
            S  D   +  A + GEAG +   HAC   ++T+        P    GR  G
Sbjct: 357 VSHGDPEDLDGAARAGEAGAL---HACPMPSSTT-----RVTPTTKRGRSGG 400

>LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3|
           subunit)
          Length = 1587

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +2

Query: 218 VTSTYYYYVADRSCSGRDSATMFSAGQGGEAGPIADGHACCRRANTSAG 364
           V  +YYY V+D S  GR        G   E GP   G   CR  + + G
Sbjct: 254 VLQSYYYAVSDFSVGGRCKCN----GHASECGPDVAGQLACRCQHNTTG 298

>MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)|
          Length = 640

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 164 GFCQGPPTGTSPADGIDGVTSTYYYY 241
           GF Q PPT   PA G   V + Y YY
Sbjct: 222 GFAQAPPTAQLPATGQPTVNNDYSYY 247

>UL38_HCMVA (P16779) Protein UL38|
          Length = 331

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 255 HALAETVL--PCSVPAKEERPDPSLTATRAADEPTPPPDMVSP 377
           HA A+ VL  P S+P      DP+  AT ++   T PP  V P
Sbjct: 252 HAPAQRVLSAPPSLPLPVSEEDPAAAATPSSSAATTPPSSVVP 294

>LBD13_ARATH (Q9AT61) LOB domain protein 13|
          Length = 268

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 255 HALAETVL--PCSVPAKEERPDPSLTATRAADEPTPPPDMVSP 377
           HALA  +L  P   P    RP P L +++ A  PTPP  + SP
Sbjct: 184 HALASAILLPPPPPPPPTPRP-PRLLSSQPAPPPTPPVSLPSP 225

>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = +3

Query: 279 PCSVPAKEERPDPSLTAT-----RAADEPTPPPDMVSPVC 383
           P SVP  E  P+P   AT      A +EP  PP+    VC
Sbjct: 240 PRSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRCQVC 279

>SYL_CORDI (Q6NEF5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 960

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 249 IVHALAETVLPCSVPAKEERPDPSLTATRAADEPTPP 359
           + HAL E++LP  +P  E+    S     A  EP PP
Sbjct: 539 LAHALPESMLPVELPEVEDYKPVSFDPDDADSEPHPP 575

>WNT9B_MOUSE (O35468) Protein Wnt-9b precursor (Wnt-15) (Wnt-14b)|
          Length = 359

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -1

Query: 105 KVGPSMAGRLQSGDSSCFATSCGR 34
           K  P  AGR+ S DSSC +  CGR
Sbjct: 297 KYSPGTAGRVCSRDSSCSSLCCGR 320

>VTS1_USTMA (Q4P965) Protein VTS1|
          Length = 728

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +1

Query: 10  GHGGSPRAPATASSK----AAGVPGLQPASHRRPNLPHH 114
           GH G+ R+P+   +     +AG   L+P+S   PN+ HH
Sbjct: 59  GHDGALRSPSIGGNAPMPGSAGPRNLRPSSEMLPNMNHH 97

>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
          Length = 559

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -1

Query: 414 PPFIRPSSFSGTLAIPCPAEVLARRQHAWPSAMGPASPPWPALNMVALSRPEHERS 247
           PP IRPSS     A+  P   L       P    P  PP P   ++  S P+   S
Sbjct: 434 PPGIRPSSPVAVAALAHPPSGLHPAPSTAPGPHAPLMPPSPPSQVLPASEPKRHPS 489

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -1

Query: 216 PSMPSAGEVPVGGP*QKPCHWTTLLARKALSTTTVMRKVGPSMAGRLQSGDSSC 55
           PS+PSAG+VP G     P H  ++  R   +     R       GR  +G ++C
Sbjct: 616 PSVPSAGKVPKGRRDGLPAHIGSMAQRAYWALLNQRRDQSIVALGRSGAGKTTC 669

>YBEM_ECOLI (P39874) Hypothetical UPF0012 protein ybeM (EC 3.5.-.-)|
          Length = 262

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -1

Query: 186 VGGP*QKPCHWTTLLARKALSTTTVMRKVG 97
           V GP  K  HW+TLLA +AL TT  M   G
Sbjct: 174 VRGP-LKEHHWSTLLAARALDTTCYMVAAG 202

>YBEM_ECO57 (P58054) Hypothetical UPF0012 protein ybeM (EC 3.5.-.-)|
          Length = 262

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -1

Query: 186 VGGP*QKPCHWTTLLARKALSTTTVMRKVG 97
           V GP  K  HW+TLLA +AL TT  M   G
Sbjct: 174 VRGP-LKEHHWSTLLAARALDTTCYMVAAG 202

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 PCSVPAKEERPDPSLTATRAADEPTPPPDMVSPVCR*KT 395
           P +    +E+P P  T +   ++PTPP    +P  + KT
Sbjct: 262 PTTTSCTKEKPTPPTTTSCTKEKPTPPHHDTTPCTKKKT 300

>HUNB_DROVI (P13361) Protein hunchback|
          Length = 816

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
 Frame = -1

Query: 333 AWPSAMGPASPPWPALNMVALSRPEHERSAT***YVDVTPSMPSAGEVPVGGP*QK---- 166
           A P+A+ P SPP PA ++ +               V+  PS+PSA   P+    Q+    
Sbjct: 459 AAPAAVAPVSPPSPAKSVAS---------------VEQAPSLPSALLPPLASLLQQNRNM 503

Query: 165 ---PCHWTTLLARKALSTTTVMRKVGPSMAGRLQ 73
              P     L    A     V+ ++ P MA +LQ
Sbjct: 504 AFFPYWNLNLQVLAAQQQAAVLAQLSPRMADQLQ 537

>CDC2C_ANTMA (Q38774) Cell division control protein 2 homolog C (EC 2.7.11.22)|
           (EC 2.7.11.23)
          Length = 305

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = +2

Query: 146 SVVQWHGFCQGPPTGTSPA------DGIDGVTSTYYYYVADR 253
           S+  WH + Q  P  ++PA      DG+D +T T  Y  ADR
Sbjct: 244 SLRDWHVYPQWEPQNSAPAVPSLGPDGLDLLTKTLKYDPADR 285

>SYL_COREF (Q8FLM0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 957

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 249 IVHALAETVLPCSVPAKEERPDPSLTATRAADEPTPP 359
           + +AL E++LP  +P  E+    S     A  EP+PP
Sbjct: 533 VAYALPESMLPVELPEVEDYKPVSFDPEDADSEPSPP 569

>SYL_CORGL (Q8NLC4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 952

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 255 HALAETVLPCSVPAKEERPDPSLTATRAADEPTPP 359
           HAL +++LP  +P  E+    S     A  EP+PP
Sbjct: 530 HALPDSMLPVELPEVEDYKPVSFDPEDADSEPSPP 564

>WASF1_HUMAN (Q92558) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
           (Verprolin homology domain-containing protein 1)
          Length = 559

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -1

Query: 414 PPFIRPSSFSGTLAIPCPAEVLARRQHAWPSAMGPASPPWPALNMVALSRPEHERS 247
           PP IRPSS     A+  P   L       P    P  PP P   ++  S P+   S
Sbjct: 434 PPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEPKRHPS 489

>HAGA1_PORGI (P59915) Hemagglutinin A precursor|
          Length = 2164

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 151  DAPGAESVVDHDGDEEGW-----AVDGWPVAVRGLQLLCY*LWPEPGVNP 17
            +AP   + +D DGD +GW        GW  A  G  ++    W    +NP
Sbjct: 1602 EAPAEWTTIDADGDGQGWLCLSSGQLGWLTAHGGTNVVASFSWNGMALNP 1651



 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 151 DAPGAESVVDHDGDEEGW-----AVDGWPVAVRGLQLLCY*LWPEPGVNP 17
           +AP   + +D DGD +GW        GW  A  G  ++    W    +NP
Sbjct: 698 EAPAEWTTIDADGDGQGWLCLSSGQLGWLTAHGGTNVVASFSWNGMALNP 747

>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4|
           (Trithorax homolog 2)
          Length = 2715

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 258 ALAETVLPCSVPAKEERPDPSLTATRAADEPTPPPDMVSP 377
           A+AE ++P +   + + P P LT    +  P  PP   SP
Sbjct: 385 AVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPPSTSP 424

>HAGA2_PORGI (Q51845) Hemagglutinin A precursor|
          Length = 2628

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 151  DAPGAESVVDHDGDEEGW-----AVDGWPVAVRGLQLLCY*LWPEPGVNP 17
            +AP   + +D DGD +GW        GW  A  G  ++    W    +NP
Sbjct: 1610 EAPAEWTTIDADGDGQGWLCLSSGQLGWLTAHGGTNVVASFSWNGMALNP 1659



 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = -3

Query: 151  DAPGAESVVDHDGDEEGW-----AVDGWPVAVRGLQLLCY*LWPEPGVNP 17
            +AP   + +D DGD +GW        GW  A  G  ++    W    +NP
Sbjct: 1154 EAPAEWTTIDADGDGQGWLCLSSGQLGWLTAHGGTNVVASFSWNGMALNP 1203

>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)|
          Length = 203

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 25  PRAPATASSKAAGVPGLQPASHRRPNLP 108
           PR P  A     G   + P  H +PNLP
Sbjct: 108 PRVPQQAMMPVPGQQSMTPTQHHQPNLP 135

>FOXB2_MOUSE (Q64733) Forkhead box protein B2 (Transcription factor FKH-4)|
          Length = 428

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 46  SSKAAGVPGLQPASHRRPNLPHH 114
           S  + G PG  P  H  P+ PHH
Sbjct: 121 SGSSKGAPGTGPGGHLHPHHPHH 143

>DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2030

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 179  PPTGTSPADGIDGVTSTYYYYVADRSCSGRDSATMFSAGQGGEAGPIAD 325
            P + TSP  G+DG  ST    ++  + SG  S +  + G   EA P  D
Sbjct: 1868 PASPTSPQSGLDGSNST----LSGSASSGVSSLSESNFGHSSEAPPRTD 1912

>DOCK3_MOUSE (Q8CIQ7) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2027

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 179  PPTGTSPADGIDGVTSTYYYYVADRSCSGRDSATMFSAGQGGEAGPIAD 325
            P + TSP  G+DG  ST    ++  + SG  S +  + G   EA P  D
Sbjct: 1865 PASPTSPQSGLDGSNST----LSGSASSGVSSLSESNFGHSSEAPPRTD 1909


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,920,525
Number of Sequences: 219361
Number of extensions: 1350507
Number of successful extensions: 5533
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 4971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5522
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)