ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet06a03 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 174 bits (441), Expect = 9e-44 Identities = 91/114 (79%), Positives = 91/114 (79%) Frame = +3 Query: 114 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXX 293 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTF Sbjct: 17 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATSPPPAA 76 Query: 294 XDIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF Sbjct: 77 ADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 130
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 94.7 bits (234), Expect = 1e-19 Identities = 54/104 (51%), Positives = 63/104 (60%), Gaps = 1/104 (0%) Frame = +3 Query: 147 SVSCSASSGDN-NNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 323 S+ CS S+ + NN+ SL A DI+GLTPCK Sbjct: 33 SIVCSGSTDEKINNADGKSSLKA-----LSAALALSSILVSSTVPALPASADISGLTPCK 87 Query: 324 ESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 ESK FAKREKQS+KKL SSLK YAPDSAPALAI+AT++KTKRRF Sbjct: 88 ESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRF 131
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 87.0 bits (214), Expect = 2e-17 Identities = 42/53 (79%), Positives = 49/53 (92%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 DIAGLTPCKESK FAKREKQ++KKL +SLK YA DSAPALAI+AT++KTK+RF Sbjct: 78 DIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRF 130
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 72.0 bits (175), Expect = 7e-13 Identities = 41/104 (39%), Positives = 56/104 (53%) Frame = +3 Query: 144 LSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 323 L V+C A + + T +L+AS DIAGLTPC Sbjct: 24 LRVACQAQKNETASKVGT-ALAAS-----------ALAAAVSLSAPSAAMADIAGLTPCS 71 Query: 324 ESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 ESKA+AK EK+ +K L LK+Y DSAPA+A++AT+++TK RF Sbjct: 72 ESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARF 115
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 64.3 bits (155), Expect = 1e-10 Identities = 30/53 (56%), Positives = 37/53 (69%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 D+AGL PCK SK F +R SVKKL S L KY P++ P LA++ I+KTK RF Sbjct: 23 DVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRF 75
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 63.5 bits (153), Expect = 2e-10 Identities = 29/53 (54%), Positives = 39/53 (73%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 D+AGL PC +S AF +R K + ++L + LKKY P SAPA A+Q IDKT++RF Sbjct: 26 DVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRF 78
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 59.7 bits (143), Expect = 3e-09 Identities = 29/53 (54%), Positives = 37/53 (69%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 ++AGL PCK+S AF KR SVKKL + L KY ++ PALA+ I+KTK RF Sbjct: 25 EVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRF 77
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 59.3 bits (142), Expect = 4e-09 Identities = 30/53 (56%), Positives = 35/53 (66%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 DI GLT C ES AF KR K SVKKL + KY S PALA+Q I++T+ RF Sbjct: 25 DIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARF 77
>PSAF_CUCSA (P42048) Photosystem I reaction center subunit III (Photosystem I| 18.5 kDa protein) (PSI-F) (PS I subunit 7) (Fragment) Length = 26 Score = 42.4 bits (98), Expect = 6e-04 Identities = 19/25 (76%), Positives = 20/25 (80%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSVKKL 371 DI+GLTPCKESK F KREKQ K L Sbjct: 1 DISGLTPCKESKQFXKREKQQXKXL 25
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 40.0 bits (92), Expect = 0.003 Identities = 20/49 (40%), Positives = 28/49 (57%) Frame = +3 Query: 309 LTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRF 455 LTPC+ S F R ++KKL + L Y +S +I+ I+KTK RF Sbjct: 31 LTPCENSAQFQARLNNNIKKLENKLTYYKQNSQEYTSIKQQIEKTKIRF 79
>PSAF_PEA (P20119) Photosystem I reaction center subunit III| (Light-harvesting complex I 17 kDa protein) (PSI-F) (Fragment) Length = 20 Score = 38.9 bits (89), Expect = 0.006 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = +3 Query: 300 IAGLTPCKESKAFAKREKQ 356 I+GLTPCKESK FAKREKQ Sbjct: 2 ISGLTPCKESKQFAKREKQ 20
>PSAF_MAIZE (P13193) Photosystem I reaction center subunit III| (Light-harvesting complex I 17 kDa protein) (PSI-F) (Fragment) Length = 20 Score = 33.1 bits (74), Expect = 0.34 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +3 Query: 300 IAGLTPCKESKAFAKREK 353 IAGLTP KESKAFAK EK Sbjct: 2 IAGLTPPKESKAFAKXEK 19
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 31.6 bits (70), Expect = 0.99 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSV 362 D+AGL PCK+S AF KR +V Sbjct: 24 DVAGLVPCKDSPAFQKRAAAAV 45
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 31.6 bits (70), Expect = 0.99 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKREKQSV 362 D+AGL PCK+S AF KR +V Sbjct: 24 DVAGLVPCKDSPAFQKRAAAAV 45
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Frame = +3 Query: 297 DIAGLTPCKESKAFAKR-EKQSVKKLNSSLKKYA-----PDSAPALAIQATID 437 D+AGLTPC ES F +R E + + + + Y+ D P L + +D Sbjct: 24 DVAGLTPCSESPRFIQRAEAAATPQAKARFENYSQALCGADGLPHLIVDGRLD 76
>MXI1_RAT (O09015) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +3 Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70
>MXI1_MOUSE (P50540) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 29.3 bits (64), Expect = 4.9 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +3 Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70
>MXI1_HUMAN (P50539) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 28.9 bits (63), Expect = 6.4 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +3 Query: 117 PRL--SRPPARLSVSCSASSGDNNNSTATPS 203 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGTSNTSTANRS 70
>AMPH_ECOLI (P0AD70) Penicillin-binding protein ampH| Length = 385 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +3 Query: 300 IAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSA 407 IA LT S+ K Q KLN L KYAP A Sbjct: 85 IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA 120
>AMPH_ECO57 (P0AD71) Penicillin-binding protein ampH| Length = 385 Score = 28.9 bits (63), Expect = 6.4 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +3 Query: 300 IAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSA 407 IA LT S+ K Q KLN L KYAP A Sbjct: 85 IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA 120
>I11RA_PONPY (Q5RF19) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 422 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 120 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 224 +L PPAR VSC A+ +N + T +PS + + T Sbjct: 108 QLGYPPARPVVSCQAADYENFSCTWSPSQISGLPT 142
>I11RA_HUMAN (Q14626) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 422 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 120 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 224 +L PPAR VSC A+ +N + T +PS + + T Sbjct: 108 QLGYPPARPVVSCQAADYENFSCTWSPSQISGLPT 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.118 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,781,984 Number of Sequences: 219361 Number of extensions: 284286 Number of successful extensions: 1690 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1640 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1689 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
