ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet04h05 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 96.7 bits (239), Expect = 1e-20 Identities = 55/91 (60%), Positives = 55/91 (60%) Frame = +2 Query: 137 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 316 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68 Query: 317 KKTLRQGVVVITXXXXXXXXXXXXXXXETGK 409 KKTLRQGVVVIT ETGK Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGK 99
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 95.5 bits (236), Expect = 3e-20 Identities = 54/91 (59%), Positives = 54/91 (59%) Frame = +2 Query: 137 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 316 TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68 Query: 317 KKTLRQGVVVITXXXXXXXXXXXXXXXETGK 409 KKTLRQGVVVIT ETGK Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGK 99
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 32.0 bits (71), Expect = 0.36 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -2 Query: 195 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 46 AVS L F+G+E VEG S + +D E L L++ +ELEL Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 31.6 bits (70), Expect = 0.47 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 12/102 (11%) Frame = +2 Query: 140 LSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXXXXXXX 283 LS+PK+G S +V +KD++ F G+S K++ +S +R + Sbjct: 13 LSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATE 69 Query: 284 XXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGK 409 KKTLR+G VVIT ETGK Sbjct: 70 SPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGK 111
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.8 bits (68), Expect = 0.80 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 336 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 235 P V+L LGD + P + + G+ VAT TAS Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 1.0 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -2 Query: 303 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 166 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -2 Query: 297 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 175 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 324 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 235 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>SYFB_MYCS5 (Q4A6A2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 726 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/51 (29%), Positives = 32/51 (62%) Frame = -2 Query: 153 LGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTVLLYFTSGFPSR 1 LG ++VE A+ +G+ +SLA+T E ++++L+ + ++ + FPS+ Sbjct: 290 LGNKQVEVSDALAVFNGDKVVSLAATMGLEESKVDLQTSEFIFEMASFPSK 340
>FLR1_YEAST (P38124) Fluconazole resistance protein 1| Length = 548 Score = 28.5 bits (62), Expect = 4.0 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -2 Query: 282 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 103 + TG G VA + S L+L +A AP+L P LG V+ ++WR + Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265 Query: 102 ELGLSLASTALQEFNELELECTVLLY 25 + LS A+ L F E + +LY Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -2 Query: 297 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 175 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123
>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)| Length = 37 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 276 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 172 T A A LTA++A A LT +AA + ATA Sbjct: 2 TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 28.1 bits (61), Expect = 5.2 Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 12/103 (11%) Frame = +2 Query: 137 TLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXXXXXX 280 + S+PK+G +GA ++KD+ F GVSS K S A+R + Sbjct: 12 SFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAETAAP 68 Query: 281 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGK 409 KKTLR+G VVIT E+GK Sbjct: 69 ATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGK 111
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -2 Query: 297 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 175 VEP L+ T E V T V+ + + F + TP AV ++T Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144
>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 909 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 333 CRSVFLPLGDDAVEPGLVVTG 271 CR + LGDD +PGLV+ G Sbjct: 615 CRGTHVYLGDDMPDPGLVLAG 635
>XRP2_CHICK (Q5ZHN4) Protein XRP2| Length = 356 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -2 Query: 333 CRSVFLPLGDDAVEPGLVVTGEGAVATCVLTASDAF 226 C S F+PL + L G+GAV C T +D F Sbjct: 290 CASEFIPLLERGPVVALEFNGDGAVEGCRNTVNDVF 325
>ANPB_PSEAM (Q99013) Ice-structuring protein B precursor (ISP B) (Antifreeze| protein B) (HPLC8) Length = 82 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -2 Query: 276 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 172 T A A LTA++A A LT NAA + ATA Sbjct: 46 TASDAAAAAALTAANAAAAAKLTADNAAAAAAATA 80
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = -2 Query: 210 TPRNAAVSFTATAPMLLPFLGT-ERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 34 TP+ TAT P+ LP G E+ +G+ + +D LG L + L L L C V Sbjct: 605 TPKPGTSQSTATGPISLPSTGAGEQGDGQRFSTVDMAVLGGVLGALLL-----LALICLV 659 Query: 33 LL 28 +L Sbjct: 660 IL 661
>ADA12_MOUSE (Q61824) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 903 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 333 CRSVFLPLGDDAVEPGLVVTG 271 CR + LGDD +PGLV+ G Sbjct: 613 CRGTHVYLGDDMPDPGLVLAG 633
>HAS1_CANAL (Q5AK59) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 565 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Frame = -2 Query: 288 GLVVTGEGAVATCVLTASDAFFALLLTPRN--AAVSFTATAPMLLPFLGTER 139 G TG G ++ A + ++L + PRN A + T T + L G R Sbjct: 150 GAAKTGSGKTLAFLIPAIELLYSLKIKPRNGTAVIIITPTRELALQIFGVAR 201
>ANPA_PSEAM (P04002) Ice-structuring protein A precursor (ISP A) (Antifreeze| protein A) (HPLC6) Length = 82 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -2 Query: 276 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 172 T A A LTA++A A LT NAA + ATA Sbjct: 46 TASDAAAAAALTAANAKAAAELTAANAAAAAAATA 80
>TRAM7_ECOLI (P33787) Protein traM| Length = 127 Score = 27.3 bits (59), Expect = 8.9 Identities = 24/57 (42%), Positives = 29/57 (50%) Frame = -2 Query: 204 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 34 R VSF+ATA MLL LG E + M+ E + A EFN+L LEC V Sbjct: 29 REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75
>TRAM6_ECOLI (P18808) Protein traM| Length = 127 Score = 27.3 bits (59), Expect = 8.9 Identities = 24/57 (42%), Positives = 29/57 (50%) Frame = -2 Query: 204 RNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELELECTV 34 R VSF+ATA MLL LG E + M+ E + A EFN+L LEC V Sbjct: 29 REKDVSFSATASMLLE-LGLRVYEAQ----MERKESAFNQA-----EFNKLLLECVV 75
>RBL_ARCFU (O28635) Ribulose bisphosphate carboxylase (EC 4.1.1.39) (RuBisCO)| Length = 441 Score = 27.3 bits (59), Expect = 8.9 Identities = 26/74 (35%), Positives = 32/74 (43%) Frame = -2 Query: 315 PLGDDAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERV 136 P DD V + EG T DA A+ AA S T T L P+ ERV Sbjct: 17 PQKDDIVAVFRITPAEG------FTIEDAAGAV------AAESSTGTWTSLHPWYDEERV 64 Query: 135 EGRSWRAMDDGELG 94 +G S +A D +LG Sbjct: 65 KGLSAKAYDFVDLG 78
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +2 Query: 317 KKTLRQGVVVITXXXXXXXXXXXXXXXETGK 409 KKTLR+G V+IT ETGK Sbjct: 80 KKTLRKGSVIITGASSGLGLATAKALAETGK 110
>CASK_UNCUN (Q29150) Kappa-casein (Fragment)| Length = 146 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -2 Query: 294 EPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 175 EP L T E V T V T + + F + TP V T+T Sbjct: 105 EPTLTPTTEPIVNTVVTTEASSEFTITSTPETTTVPVTST 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,501,296 Number of Sequences: 219361 Number of extensions: 350988 Number of successful extensions: 1300 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1289 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1296 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
