| Clone Name | baet04h05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR) Length = 1490 Score = 753 bits (380), Expect = 0.0 Identities = 380/380 (100%) Strand = Plus / Plus Query: 30 gcagcacagtgcactcgagttcgagctcgttgaactcctgcagtgcagtgctagctagcg 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11 gcagcacagtgcactcgagttcgagctcgttgaactcctgcagtgcagtgctagctagcg 70 Query: 90 acagtccaagctcaccgtcatccatggctctccagcttctcccctccaccctctccgtcc 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 acagtccaagctcaccgtcatccatggctctccagcttctcccctccaccctctccgtcc 130 Query: 150 ccaagaagggcagcagcatgggcgcagtggcggtgaaggacacggcggcgttcctgggcg 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 ccaagaagggcagcagcatgggcgcagtggcggtgaaggacacggcggcgttcctgggcg 190 Query: 210 tgagcagcaaggcgaagaaggcgtcgctggcggtgaggacgcaggtggccacggcgcctt 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 tgagcagcaaggcgaagaaggcgtcgctggcggtgaggacgcaggtggccacggcgcctt 250 Query: 270 cgccggtgacgacgagcccgggctcgaccgcgtcgtcgccgagcggcaagaagacgctgc 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 cgccggtgacgacgagcccgggctcgaccgcgtcgtcgccgagcggcaagaagacgctgc 310 Query: 330 ggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctggcggcggccaagg 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 ggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctggcggcggccaagg 370 Query: 390 cgctggccgagacgggcaag 409 |||||||||||||||||||| Sbjct: 371 cgctggccgagacgggcaag 390
>emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlorophyilide reductase Length = 1484 Score = 492 bits (248), Expect = e-136 Identities = 296/312 (94%) Strand = Plus / Plus Query: 98 agctcaccgtcatccatggctctccagcttctcccctccaccctctccgtccccaagaag 157 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 58 agctcaccgtcatccatggctctccagctcctcccctccaccctctccgtccccaagaag 117 Query: 158 ggcagcagcatgggcgcagtggcggtgaaggacacggcggcgttcctgggcgtgagcagc 217 || |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| Sbjct: 118 ggtagcagcatgggcgcggcggcagtgaaggacacggcggcgttcctgggcgtgagcagc 177 Query: 218 aaggcgaagaaggcgtcgctggcggtgaggacgcaggtggccacggcgccttcgccggtg 277 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct: 178 aaggcgaagaaggcgtcgctagcggtgaggacgcaggtggccacggcgccttcgtcggtg 237 Query: 278 acgacgagcccgggctcgaccgcgtcgtcgccgagcggcaagaagacgctgcggcagggc 337 |||||||||||||||||| | || || ||||||||||||||||||||||||||||||| Sbjct: 238 acgacgagcccgggctcggcgacggcgaagccgagcggcaagaagacgctgcggcagggc 297 Query: 338 gtggtggtgatcacgggcgcgtcatccgggctgggcctggcggcggccaaggcgctggcc 397 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct: 298 gtggtggtgatcacgggcgcgtcgtccgggctgggtctggcggcggccaaggcgctggca 357 Query: 398 gagacgggcaag 409 |||||||||||| Sbjct: 358 gagacgggcaag 369
>ref|XM_474360.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 202 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 261 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 262 gcggcggcgaaggcgctggcggagacggg 290
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 4144 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 4203 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 4204 gcggcggcgaaggcgctggcggagacggg 4232
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 34698582 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 34698641 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 34698642 gcggcggcgaaggcgctggcggagacggg 34698670
>dbj|AK104855.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-B11, full insert sequence Length = 1384 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 274 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 333 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 334 gcggcggcgaaggcgctggcggagacggg 362
>dbj|AK103943.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G12, full insert sequence Length = 1384 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 274 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 333 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 334 gcggcggcgaaggcgctggcggagacggg 362
>dbj|AK103940.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-G08, full insert sequence Length = 1384 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 274 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 333 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 334 gcggcggcgaaggcgctggcggagacggg 362
>dbj|AK065236.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H23, full insert sequence Length = 1385 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 275 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 334 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 335 gcggcggcgaaggcgctggcggagacggg 363
>emb|AL732349.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0402C08, complete sequence Length = 100836 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 96506 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 96565 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 96566 gcggcggcgaaggcgctggcggagacggg 96594
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 317 aagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctg 376 |||||||||||||||||||| |||||||||||||| |||||||| || ||||| || || Sbjct: 41602 aagaagacgctgcggcagggggtggtggtgatcaccggcgcgtcgtcggggctcgggctc 41661 Query: 377 gcggcggccaaggcgctggccgagacggg 405 |||||||| ||||||||||| |||||||| Sbjct: 41662 gcggcggcgaaggcgctggcggagacggg 41690
>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase Length = 1146 Score = 99.6 bits (50), Expect = 7e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 336 gcgtggtggtgatcacgggcgcgtcatccgggctgggcctggcggcggccaaggcgctgg 395 ||||||||||||||||||||||||| || || || ||||| ||||||||||||||||||| Sbjct: 1 gcgtggtggtgatcacgggcgcgtcgtcgggcctcggcctcgcggcggccaaggcgctgg 60 Query: 396 ccgagacgggcaag 409 | |||||||||||| Sbjct: 61 cggagacgggcaag 74
>ref|NM_197169.1| Oryza sativa (japonica cultivar-group) putative dehydrogenase (OSJNBa0017E08.8), mRNA Length = 1564 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 314 ggcaagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggc 373 |||||| |||||||||| ||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 306 ggcaagcagacgctgcgcaagggcacggcggtcatcaccggcgcgtcgtccgggcttggc 365 Query: 374 ctggcggcggccaaggcgctggccgagacgggca 407 || ||| |||| ||||||||||| |||||||||| Sbjct: 366 ctcgcgacggcgaaggcgctggcggagacgggca 399
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Minus Query: 314 ggcaagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggc 373 |||||| |||||||||| ||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 120731 ggcaagcagacgctgcgcaagggcacggcggtcatcaccggcgcgtcgtccgggcttggc 120672 Query: 374 ctggcggcggccaaggcgctggccgagacgggca 407 || ||| |||| ||||||||||| |||||||||| Sbjct: 120671 ctcgcgacggcgaaggcgctggcggagacgggca 120638
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 314 ggcaagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggc 373 |||||| |||||||||| ||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 18385962 ggcaagcagacgctgcgcaagggcacggcggtcatcaccggcgcgtcgtccgggcttggc 18386021 Query: 374 ctggcggcggccaaggcgctggccgagacgggca 407 || ||| |||| ||||||||||| |||||||||| Sbjct: 18386022 ctcgcgacggcgaaggcgctggcggagacgggca 18386055
>dbj|AK068143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C06, full insert sequence Length = 2944 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 314 ggcaagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggc 373 |||||| |||||||||| ||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 1506 ggcaagcagacgctgcgcaagggcacggcggtcatcaccggcgcgtcgtccgggcttggc 1565 Query: 374 ctggcggcggccaaggcgctggccgagacgggca 407 || ||| |||| ||||||||||| |||||||||| Sbjct: 1566 ctcgcgacggcgaaggcgctggcggagacgggca 1599
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 75.8 bits (38), Expect = 1e-10 Identities = 80/94 (85%) Strand = Plus / Plus Query: 314 ggcaagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggc 373 |||||| |||||||||| ||||| || ||| ||||| |||||||| |||||||| ||| Sbjct: 18396015 ggcaagcagacgctgcgcaagggcacggcggtcatcaccggcgcgtcgtccgggcttggc 18396074 Query: 374 ctggcggcggccaaggcgctggccgagacgggca 407 || ||| |||| ||||||||||| |||||||||| Sbjct: 18396075 ctcgcgacggcgaaggcgctggcggagacgggca 18396108
>gb|AY862405.1| Musa acuminata NADPH-protochlorophyllide oxidoreductase gene, complete cds Length = 1619 Score = 52.0 bits (26), Expect = 0.001 Identities = 65/78 (83%) Strand = Plus / Plus Query: 325 gctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggcctggcggcggc 384 ||||||| ||||||||||||| ||||| ||||| || || || || ||||| || || || Sbjct: 423 gctgcggaagggcgtggtggtaatcaccggcgcctcctcgggactcggcctcgccgctgc 482 Query: 385 caaggcgctggccgagac 402 |||||| || |||||||| Sbjct: 483 caaggctctcgccgagac 500
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 375 tggcggcggccaaggcgctggccg 398 |||||||||||||||||||||||| Sbjct: 5142952 tggcggcggccaaggcgctggccg 5142975
>gb|AF223646.1| Uncultured bacterium plasmid pAH115 esterase gene, complete cds Length = 2142 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 290 ggctcgaccgcgtcgtcgccga 311 |||||||||||||||||||||| Sbjct: 140 ggctcgaccgcgtcgtcgccga 119
>ref|XM_957279.1| Neurospora crassa OR74A hypothetical protein (NCU06338.1) partial mRNA Length = 5772 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 ggcgtgagcagcaaggcgaagaagg 230 ||||||||||||||||| ||||||| Sbjct: 5698 ggcgtgagcagcaaggcaaagaagg 5722
>ref|XM_326192.1| Neurospora crassa OR74A hypothetical protein (NCU06338.1) partial mRNA Length = 5772 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 206 ggcgtgagcagcaaggcgaagaagg 230 ||||||||||||||||| ||||||| Sbjct: 5698 ggcgtgagcagcaaggcaaagaagg 5722
>gb|BT011387.1| Drosophila melanogaster GH10077 full insert cDNA Length = 6412 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tggggaacccactggtgaagt 26 ||||||||||||||||||||| Sbjct: 994 tggggaacccactggtgaagt 1014
>gb|AC124697.3| Mus musculus BAC clone RP24-177N20 from chromosome 1, complete sequence Length = 164612 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 cttctcccctccaccctctcc 145 ||||||||||||||||||||| Sbjct: 42019 cttctcccctccaccctctcc 41999
>gb|AE005920.1| Caulobacter crescentus CB15 section 246 of 359 of the complete genome Length = 10062 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 370 gggcctggcggcggccaaggcgctg 394 |||||||||||||| |||||||||| Sbjct: 7333 gggcctggcggcggtcaaggcgctg 7309
>gb|AC009373.7| Drosophila melanogaster 3L BAC RP98-22B18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167630 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tggggaacccactggtgaagt 26 ||||||||||||||||||||| Sbjct: 131259 tggggaacccactggtgaagt 131279
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 375 tggcggcggccaaggcgctggccga 399 ||||||| ||||||||||||||||| Sbjct: 4597581 tggcggcagccaaggcgctggccga 4597605
>ref|NM_140725.1| Drosophila melanogaster CG18265-RA (CG18265), mRNA Length = 6394 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tggggaacccactggtgaagt 26 ||||||||||||||||||||| Sbjct: 994 tggggaacccactggtgaagt 1014
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 382 ggccaaggcgctggccgagac 402 ||||||||||||||||||||| Sbjct: 3414909 ggccaaggcgctggccgagac 3414929
>gb|AE003524.5| Drosophila melanogaster chromosome 3L, section 61 of 83 of the complete sequence Length = 425677 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tggggaacccactggtgaagt 26 ||||||||||||||||||||| Sbjct: 388462 tggggaacccactggtgaagt 388482
>gb|AY260760.3| Streptomyces hygroscopicus subsp. yingchengensis Shy1 (shy1), CvhE (cvhE), CvhD (cvhD), CvhC (cvhC), CvhB (cvhB), CvhA (cvhA), Shy26 (shy26), Shy4 (shy4), Shy5 (shy5), Shy6 (shy6), Shy7 (shy7), Shy8 (shy8), Shy9 (shy9), Shy10 (shy10), Shy11 (shy11), Shy12 (shy12), Shy13 (shy13), Shy14 (shy14), Shy15 (shy15), Shy16 (shy16), Shy17 (shy17), Shy18 (shy18), Hmr19 (hmr19), Shy20 (shy20), Shy21 (shy21), Shy22 (shy22), Shy23 (shy23), Shy24 (shy24), and Shy25 (shy25) genes, complete cds Length = 36687 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 gctgggcctggcggcggccaa 387 ||||||||||||||||||||| Sbjct: 2550 gctgggcctggcggcggccaa 2530
>gb|DQ138898.1| Drosophila simulans strain Ky-b CG18265 gene, partial cds Length = 3927 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tggggaacccactggtgaagt 26 ||||||||||||||||||||| Sbjct: 456 tggggaacccactggtgaagt 476
>gb|DQ138896.1| Drosophila melanogaster strain Ral1 CG18265 gene, partial cds Length = 3927 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tggggaacccactggtgaagt 26 ||||||||||||||||||||| Sbjct: 456 tggggaacccactggtgaagt 476
>ref|XM_479797.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2387 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 212 agcagcaaggcgaagaaggcgtcgctgg 239 |||||||||||||| |||||| |||||| Sbjct: 1676 agcagcaaggcgaacaaggcggcgctgg 1703
>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12, complete sequence Length = 145517 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 tggcggcggccaaggcgctggccg 398 ||||||||||||||||| |||||| Sbjct: 62502 tggcggcggccaaggcggtggccg 62525
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10, complete sequence Length = 134183 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ctcgaccgcgtcgtcgccga 311 |||||||||||||||||||| Sbjct: 50427 ctcgaccgcgtcgtcgccga 50446
>gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, complete sequence Length = 197906 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 gctgcggcagggcgtggtgg 344 |||||||||||||||||||| Sbjct: 132507 gctgcggcagggcgtggtgg 132526
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gcggccaaggcgctggccga 399 |||||||||||||||||||| Sbjct: 2105778 gcggccaaggcgctggccga 2105797
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 aaggcgaagaaggcgtcgctggcg 241 |||| ||||||||||||||||||| Sbjct: 3274483 aaggggaagaaggcgtcgctggcg 3274506
>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence Length = 211910 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ctctccagcttctcccctcc 136 |||||||||||||||||||| Sbjct: 118208 ctctccagcttctcccctcc 118189
>ref|XM_982866.1| PREDICTED: Mus musculus microtubule associated serine/threonine kinase 3, transcript variant 2 (Mast3), mRNA Length = 4425 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgcggcagggcgtggtgg 344 |||||||||||||||||||| Sbjct: 3427 gctgcggcagggcgtggtgg 3408
>ref|XM_888290.2| PREDICTED: Mus musculus microtubule associated serine/threonine kinase 3, transcript variant 2 (Mast3), mRNA Length = 4425 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgcggcagggcgtggtgg 344 |||||||||||||||||||| Sbjct: 3427 gctgcggcagggcgtggtgg 3408
>ref|XM_979773.1| PREDICTED: Mus musculus microtubule associated serine/threonine kinase 3 (Mast3), mRNA Length = 4425 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgcggcagggcgtggtgg 344 |||||||||||||||||||| Sbjct: 3427 gctgcggcagggcgtggtgg 3408
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gcagggcgtggtggtgatca 350 |||||||||||||||||||| Sbjct: 4141015 gcagggcgtggtggtgatca 4141034
>gb|AC126798.3| Mus musculus BAC clone RP24-229N7 from chromosome 1, complete sequence Length = 172452 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccccaagaagggcagcagca 167 |||||||||||||||||||| Sbjct: 124088 ccccaagaagggcagcagca 124069
>gb|AC098882.3| Mus musculus BAC clone RP23-122D13 from 12, complete sequence Length = 223130 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gcagtgcagtgctagctagc 88 |||||||||||||||||||| Sbjct: 181503 gcagtgcagtgctagctagc 181484
>emb|CR666827.2|CNS0FDHT Tetraodon nigroviridis full-length cDNA Length = 555 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 ggtgaaggacacggcggcgt 200 |||||||||||||||||||| Sbjct: 224 ggtgaaggacacggcggcgt 205
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ggctgggcctggcggcggcc 385 |||||||||||||||||||| Sbjct: 1077017 ggctgggcctggcggcggcc 1077036
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ggcggcggccaaggcgctgg 395 |||||||||||||||||||| Sbjct: 1942139 ggcggcggccaaggcgctgg 1942158
>emb|X99258.1|MTMOB M.tuberculosis genomic sequence containing 4 ORF's Length = 4082 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gcggccaaggcgctggccga 399 |||||||||||||||||||| Sbjct: 3778 gcggccaaggcgctggccga 3797
>emb|BX842578.1| Mycobacterium tuberculosis H37Rv complete genome; segment 7/13 Length = 346186 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gcggccaaggcgctggccga 399 |||||||||||||||||||| Sbjct: 29855 gcggccaaggcgctggccga 29874
>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 7/14 Length = 291050 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gcggccaaggcgctggccga 399 |||||||||||||||||||| Sbjct: 184766 gcggccaaggcgctggccga 184785
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 ctggcggcggccaaggcgctggcc 397 |||||||||||| ||||||||||| Sbjct: 40231 ctggcggcggccgaggcgctggcc 40254
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29 Length = 276800 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 gctgggcctggcggcggcca 386 |||||||||||||||||||| Sbjct: 107449 gctgggcctggcggcggcca 107468
>gb|AF498106.1| Aedes aegypti relish R7 isoform mRNA, complete cds; alternatively spliced Length = 2730 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 agctcgttgaactcctgcag 72 |||||||||||||||||||| Sbjct: 1390 agctcgttgaactcctgcag 1409
>gb|AF498105.1| Aedes aegypti relish R6 isoform mRNA, complete cds; alternatively spliced Length = 3280 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 agctcgttgaactcctgcag 72 |||||||||||||||||||| Sbjct: 1941 agctcgttgaactcctgcag 1960
>gb|AC159211.2| Mus musculus BAC clone RP23-33F21 from chromosome 12, complete sequence Length = 201550 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 gcagtgcagtgctagctagc 88 |||||||||||||||||||| Sbjct: 2135 gcagtgcagtgctagctagc 2154
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 385 caaggcgctggccgagacgggcaa 408 |||||||||||||||||| ||||| Sbjct: 171756 caaggcgctggccgagaccggcaa 171779
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gcagggcgtggtggtgatca 350 |||||||||||||||||||| Sbjct: 1108145 gcagggcgtggtggtgatca 1108126
>gb|AE011995.1| Xanthomonas axonopodis pv. citri str. 306, section 373 of 469 of the complete genome Length = 11692 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gcagggcgtggtggtgatca 350 |||||||||||||||||||| Sbjct: 3837 gcagggcgtggtggtgatca 3856
>gb|AE012533.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 441 of 460 of the complete genome Length = 6066 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gcggcggccaaggcgctggc 396 |||||||||||||||||||| Sbjct: 5752 gcggcggccaaggcgctggc 5771
>gb|AE012453.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 361 of 460 of the complete genome Length = 10452 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gcagggcgtggtggtgatca 350 |||||||||||||||||||| Sbjct: 3550 gcagggcgtggtggtgatca 3569
>dbj|AK140821.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130034L06 product:weakly similar to Sast-pending protein [Mus musculus], full insert sequence Length = 4263 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgcggcagggcgtggtgg 344 |||||||||||||||||||| Sbjct: 3507 gctgcggcagggcgtggtgg 3488
>gb|AC091729.4| Homo sapiens BAC clone RP13-580H13 from 7, complete sequence Length = 104285 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ccagcttctcccctccaccc 140 |||||||||||||||||||| Sbjct: 51908 ccagcttctcccctccaccc 51927
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 gcaaggcgaagaaggcgtcg 235 |||||||||||||||||||| Sbjct: 1457481 gcaaggcgaagaaggcgtcg 1457500
>gb|DQ384244.1| Olyra latifolia tasselseed2-like short-chain dehydrogenase/reductase gene, partial cds Length = 759 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 256 ggccacggcgccttcgccggtgacgacg 283 ||||||| ||||||||||| |||||||| Sbjct: 565 ggccacgacgccttcgccgctgacgacg 592
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gcggcggccaaggcgctggc 396 |||||||||||||||||||| Sbjct: 4949256 gcggcggccaaggcgctggc 4949275 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gcagggcgtggtggtgatca 350 |||||||||||||||||||| Sbjct: 978778 gcagggcgtggtggtgatca 978759
>emb|AJ567760.1|ZMA567760 Zea mays partial mRNA for NADPH-protochlorophyllide oxidoreductase (por gene) Length = 1116 Score = 40.1 bits (20), Expect = 5.5 Identities = 77/96 (80%) Strand = Plus / Plus Query: 314 ggcaagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggc 373 ||||||||||| || || ||||| || ||| ||||| |||||||| ||||| || ||| Sbjct: 154 ggcaagaagaccctccgcaagggcacggcggtcatcaccggcgcgtcgtccggcctcggc 213 Query: 374 ctggcggcggccaaggcgctggccgagacgggcaag 409 || || |||| ||||| ||||| ||||| |||||| Sbjct: 214 ctcgccacggcgaaggccctggcggagacaggcaag 249
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 212 agcagcaaggcgaagaaggcgtcgctgg 239 |||||||||||||| |||||| |||||| Sbjct: 971854 agcagcaaggcgaacaaggcggcgctgg 971881
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 tggcggcggccaaggcgctggccg 398 ||||||||||||||||| |||||| Sbjct: 5664502 tggcggcggccaaggcggtggccg 5664479
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 tggcggcggccaaggcgctggccg 398 ||||||||||||||||| |||||| Sbjct: 16738392 tggcggcggccaaggcggtggccg 16738415 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ctcgaccgcgtcgtcgccga 311 |||||||||||||||||||| Sbjct: 16551688 ctcgaccgcgtcgtcgccga 16551707
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 cgccttcgccggtgacgacg 283 |||||||||||||||||||| Sbjct: 2286225 cgccttcgccggtgacgacg 2286244
>gb|AC068547.7| Homo sapiens BAC clone RP11-458J7 from 2, complete sequence Length = 185555 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 tctccagcttctcccctccaccct 141 ||||||||||||| |||||||||| Sbjct: 85347 tctccagcttctctcctccaccct 85370
>gb|AE004696.1| Pseudomonas aeruginosa PAO1, section 257 of 529 of the complete genome Length = 14449 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ggcgtcgctggcggtgagga 248 |||||||||||||||||||| Sbjct: 4846 ggcgtcgctggcggtgagga 4865
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cgaccgcgtcgtcgccgagc 313 |||||||||||||||||||| Sbjct: 1012168 cgaccgcgtcgtcgccgagc 1012187
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ctcgaccgcgtcgtcgccga 311 |||||||||||||||||||| Sbjct: 2286263 ctcgaccgcgtcgtcgccga 2286282 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 ctcgaccgcgtcgtcgccga 311 |||||||||||||||||||| Sbjct: 1600910 ctcgaccgcgtcgtcgccga 1600929
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 tggcggcggccaaggcgctggccg 398 ||||||||||||||||| |||||| Sbjct: 56649 tggcggcggccaaggcggtggccg 56626
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 212 agcagcaaggcgaagaaggcgtcgctgg 239 |||||||||||||| |||||| |||||| Sbjct: 134592 agcagcaaggcgaacaaggcggcgctgg 134619
>dbj|AK172971.1| Mus musculus mRNA for mKIAA0561 protein Length = 1425 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgcggcagggcgtggtgg 344 |||||||||||||||||||| Sbjct: 703 gctgcggcagggcgtggtgg 684
>gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the complete genome Length = 12204 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cgaccgcgtcgtcgccgagc 313 |||||||||||||||||||| Sbjct: 5711 cgaccgcgtcgtcgccgagc 5692
>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_B05 Length = 144799 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 212 agcagcaaggcgaagaaggcgtcgctgg 239 |||||||||||||| |||||| |||||| Sbjct: 381 agcagcaaggcgaacaaggcggcgctgg 408
>emb|X80268.1|MY4547 M.tuberculosis 45/47 gene Length = 2061 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gcggccaaggcgctggccga 399 |||||||||||||||||||| Sbjct: 1904 gcggccaaggcgctggccga 1923
>gb|AF013569.1|AF013569 Mycobacterium bovis fibronectin attachment protein (FAP-B) gene, complete cds Length = 1123 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gcggccaaggcgctggccga 399 |||||||||||||||||||| Sbjct: 901 gcggccaaggcgctggccga 920
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 gctcgaccgcgtcgtcgccgagcg 314 ||||||||| |||||||||||||| Sbjct: 1756600 gctcgaccgggtcgtcgccgagcg 1756623
>dbj|AK067392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104G24, full insert sequence Length = 2387 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 212 agcagcaaggcgaagaaggcgtcgctgg 239 |||||||||||||| |||||| |||||| Sbjct: 1676 agcagcaaggcgaacaaggcggcgctgg 1703
>gb|AY103784.1| Zea mays PCO066646 mRNA sequence Length = 1664 Score = 40.1 bits (20), Expect = 5.5 Identities = 77/96 (80%) Strand = Plus / Plus Query: 314 ggcaagaagacgctgcggcagggcgtggtggtgatcacgggcgcgtcatccgggctgggc 373 |||||||||||||| || ||||| || | | || || |||||||| ||||| || ||| Sbjct: 336 ggcaagaagacgctccgcaagggcacggcgatcataaccggcgcgtcgtccggcctcggc 395 Query: 374 ctggcggcggccaaggcgctggccgagacgggcaag 409 ||||| |||| ||||| ||||| ||||| |||||| Sbjct: 396 ctggccacggcgaaggccctggcggagaccggcaag 431
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gcagggcgtggtggtgatca 350 |||||||||||||||||||| Sbjct: 1141678 gcagggcgtggtggtgatca 1141659
>gb|BC024265.1| Mus musculus microtubule associated serine/threonine kinase 3, mRNA (cDNA clone IMAGE:5137303), complete cds Length = 3042 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 gctgcggcagggcgtggtgg 344 |||||||||||||||||||| Sbjct: 1139 gctgcggcagggcgtggtgg 1120
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 371 ggcctggcggcggccaaggcgctg 394 ||||||| |||||||||||||||| Sbjct: 4462203 ggcctggtggcggccaaggcgctg 4462180 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,599,245 Number of Sequences: 3902068 Number of extensions: 3599245 Number of successful extensions: 85410 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 82387 Number of HSP's gapped (non-prelim): 3024 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)