ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet04h04 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 122 bits (305), Expect = 5e-28 Identities = 66/102 (64%), Positives = 66/102 (64%) Frame = +1 Query: 127 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 306 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQVATAPSPVTTSPGSTASSPSG 68 Query: 307 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 KKTLRQGVVVIT ETGKWHVVMACRDFL Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFL 110
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 120 bits (302), Expect = 1e-27 Identities = 65/102 (63%), Positives = 65/102 (63%) Frame = +1 Query: 127 TLSVPKKGSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXX 306 TLSVPKKGSSMGA AVKDTAAFLGVSSKAKKASLAVRTQ Sbjct: 9 TLSVPKKGSSMGAAAVKDTAAFLGVSSKAKKASLAVRTQVATAPSSVTTSPGSATAKPSG 68 Query: 307 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 KKTLRQGVVVIT ETGKWHVVMACRDFL Sbjct: 69 KKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFL 110
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 56.6 bits (135), Expect = 2e-08 Identities = 39/113 (34%), Positives = 53/113 (46%), Gaps = 12/113 (10%) Frame = +1 Query: 130 LSVPKKGSSMGAVAVKDTAAFLGVSS----KAKKASLAVRTQ--------XXXXXXXXXX 273 LS+PK+G S +V +KD++ F G+S K++ +S +R + Sbjct: 13 LSIPKEGKS--SVCLKDSSLF-GISFSDHLKSEFSSSTLRCKRELNQQIGAIRAQTTATE 69 Query: 274 XXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 KKTLR+G VVIT ETGKWHV+MACRDFL Sbjct: 70 SPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFL 122
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 52.4 bits (124), Expect = 5e-07 Identities = 23/42 (54%), Positives = 26/42 (61%) Frame = +1 Query: 307 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 KKTLR+G V+IT ETGKWHV+MACRDFL Sbjct: 80 KKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFL 121
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 52.0 bits (123), Expect = 6e-07 Identities = 23/42 (54%), Positives = 26/42 (61%) Frame = +1 Query: 307 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 KKTLR+G VV+T ETGKWHV+MACRDFL Sbjct: 87 KKTLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFL 128
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 52.0 bits (123), Expect = 6e-07 Identities = 39/114 (34%), Positives = 52/114 (45%), Gaps = 12/114 (10%) Frame = +1 Query: 127 TLSVPKKGSSMGAVAVKDTAAFLGVSS-----KAKKASLAVRTQ-------XXXXXXXXX 270 + S+PK+G +GA ++KD+ F GVSS K S A+R + Sbjct: 12 SFSIPKEGK-IGA-SLKDSTLF-GVSSLSDSLKGDFTSSALRCKELRQKVGAVRAETAAP 68 Query: 271 XXXXXXXXXXXXKKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 KKTLR+G VVIT E+GKWHV+MACRD+L Sbjct: 69 ATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYL 122
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 49.3 bits (116), Expect = 4e-06 Identities = 22/42 (52%), Positives = 26/42 (61%) Frame = +1 Query: 307 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 KKTLR+G VV+T ETGKW+V+MACRDFL Sbjct: 83 KKTLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFL 124
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 48.1 bits (113), Expect = 9e-06 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Frame = +1 Query: 163 AVAVKDTAAFLGVSSK-AKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQGVVVI 339 A +K A LG+ +K +S+A+R Q KKT+R G +I Sbjct: 33 ADGLKLDATSLGLRTKRVNTSSVAIRAQAAAVSAPTATPASPAG-----KKTVRTGNAII 87 Query: 340 TXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 T E+GKWHV+MACRD+L Sbjct: 88 TGASSGLGLATAKALAESGKWHVIMACRDYL 118
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 46.2 bits (108), Expect = 3e-05 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = +1 Query: 307 KKTLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 KKT R+G VIT +TGKWHV+MACR+FL Sbjct: 84 KKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRNFL 125
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/35 (57%), Positives = 20/35 (57%) Frame = +1 Query: 328 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 VVVIT ETGKWHVVMACRDFL Sbjct: 1 VVVITGASSGLGLAAAKALAETGKWHVVMACRDFL 35
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 42.4 bits (98), Expect = 5e-04 Identities = 28/95 (29%), Positives = 38/95 (40%) Frame = +1 Query: 148 GSSMGAVAVKDTAAFLGVSSKAKKASLAVRTQXXXXXXXXXXXXXXXXXXXXXKKTLRQG 327 G MG VA K A L VS+ A ++++ KKT + Sbjct: 92 GLRMGEVA-KFGGALLSVSTVAAN----LKSKPGVLSVNAVTAPAETMNKPSSKKTATKS 146 Query: 328 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 +IT +TG+WHV+MACRDFL Sbjct: 147 TCIITGASSGLGLATAKALADTGEWHVIMACRDFL 181
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 37.0 bits (84), Expect = 0.020 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +1 Query: 313 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFL 432 T ++ +IT TG+WHVVMACRDFL Sbjct: 82 TQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFL 121
>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 366 Score = 32.0 bits (71), Expect = 0.65 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = -2 Query: 185 AVSFTATAPMLLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 36 AVS L F+G+E VEG S + +D E L L++ +ELEL Sbjct: 243 AVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292
>ICAM5_MOUSE (Q60625) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 917 Score = 30.8 bits (68), Expect = 1.5 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 326 PCRSVFLPLGDDAVEPGLVVTGEGAVATCVLTAS 225 P V+L LGD + P + + G+ VAT TAS Sbjct: 258 PEAGVYLSLGDQRLNPNVTLDGDSLVATATATAS 291
>YHIM_ECOLI (P37630) Inner membrane protein yhiM| Length = 364 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -2 Query: 293 DAVEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPM 156 D G V+ G G +A CV T + + LL P+NAA S + P+ Sbjct: 117 DEFVAGHVIFGVGMIAACVSTVAASSGHFLLIPKNAAGSKSDGTPV 162
>CASK_CAMDR (P79139) Kappa-casein precursor| Length = 182 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -2 Query: 287 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 165 VEP ++ T E AV T V+ + + F TP V T+T Sbjct: 140 VEPPVIPTAEPAVNTVVIAEASSEFITTSTPETTTVQITST 180
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 28.9 bits (63), Expect = 5.5 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 314 VFLPLGDDAVEPGLVVTGEGAVATCVLTAS 225 V+L LGD + P + + G+ VAT TAS Sbjct: 262 VYLALGDQNLSPDVTLEGDAFVATATATAS 291
>FLR1_YEAST (P38124) Fluconazole resistance protein 1| Length = 548 Score = 28.5 bits (62), Expect = 7.2 Identities = 26/86 (30%), Positives = 39/86 (45%) Frame = -2 Query: 272 VVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTATAPMLLPFLGTERVEGRSWRAMDDG 93 + TG G VA + S L+L +A AP+L P LG V+ ++WR + Sbjct: 212 LATGGGTVADII---SPEMVPLVLGMWSAGA---VAAPVLAPLLGAAMVDAKNWRFIFWL 265 Query: 92 ELGLSLASTALQEFNELELECTVLLY 15 + LS A+ L F E + +LY Sbjct: 266 LMWLSAATFILLAFFFPETQHHNILY 291
>CASK_LAMGU (Q28451) Kappa-casein (Fragment)| Length = 125 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -2 Query: 287 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 165 VEP ++ T E V T V+ + + F TP V T+T Sbjct: 83 VEPPVIPTAEPVVNTVVIAEASSEFITTSTPETTTVQITST 123
>CASK_TAYTA (Q28794) Kappa-casein (Fragment)| Length = 146 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -2 Query: 287 VEPGLVVTGEGAVATCVLTASDAFFALLLTPRNAAVSFTAT 165 VEP L+ T E V T V+ + + F + TP AV ++T Sbjct: 104 VEPTLIPTTEPVVNTVVIPEAASEFLITNTPETTAVQVSST 144
>ANP3_PSEAM (P02733) Ice-structuring protein 3 (ISP 3) (Antifreeze peptide 3)| Length = 37 Score = 28.1 bits (61), Expect = 9.4 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -2 Query: 266 TGEGAVATCVLTASDAFFALLLTPRNAAVSFTATA 162 T A A LTA++A A LT +AA + ATA Sbjct: 2 TASDAAAAAALTAABAAAAAKLTABBAAAAAAATA 36 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.128 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,493,857 Number of Sequences: 219361 Number of extensions: 317018 Number of successful extensions: 1244 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1235 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1240 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
