ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet04h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473641.1| Oryza sativa (japonica cultivar-group), predic... 172 4e-40
2dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 4e-40
3dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 4e-40
4emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4,... 101 1e-18
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 1e-18
6ref|NM_197542.1| Oryza sativa (japonica cultivar-group) unknown ... 50 0.004
7dbj|AK061357.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
8gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 geno... 46 0.061
9gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 gen... 46 0.061
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.061
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.061
12gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete seq... 44 0.24
13gb|U49795.1|CEU49795 Caenorhabditis elegans DNA-binding protein ... 44 0.24
14emb|CR684812.2|CNS0FRCO Tetraodon nigroviridis full-length cDNA 40 3.7
15emb|CR657739.2|CNS0F6HD Tetraodon nigroviridis full-length cDNA 40 3.7
16gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 3.7
17ref|XM_342076.2| PREDICTED: Rattus norvegicus dynein, axonemal, ... 40 3.7
18emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 3.7
19emb|Z71670.1|SCYNR055C S.cerevisiae chromosome XIV reading frame... 40 3.7
20gb|U45318.1|REU45318 Rhizobium etli PopQ (popQ) gene, partial cd... 40 3.7
21gb|L42348.1|YSCHOL1G Saccharomyces cerevisiae (clone pMW18) HOL1... 40 3.7
22gb|AC171502.2| Mus musculus BAC clone RP23-242G4 from chromosome... 40 3.7 
>ref|XM_473641.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1023

 Score =  172 bits (87), Expect = 4e-40
 Identities = 204/243 (83%)
 Strand = Plus / Plus

                                                                       
Query: 25  cgaccgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgc 84
           |||||| |||| ||||||||| || |  ||||||| ||||||||| ||||||||||||||
Sbjct: 75  cgaccggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgc 134

                                                                       
Query: 85  gtcgctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggctt 144
            ||||  |||||||   |  ||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 135 ctcgccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggctt 194

                                                                       
Query: 145 cttccagatcgtaaaccatgggatatcagaggagctgctggagaaggtgatggctgtggg 204
           ||||||| ||   ||||| |||||| |||||||||| ||||||||||||||||| |||| 
Sbjct: 195 cttccaggtcaccaaccacgggatagcagaggagctactggagaaggtgatggccgtggc 254

                                                                       
Query: 205 tctggagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatc 264
             ||||||| ||| |||| || ||||| ||||||| |||||| ||||| || ||||||||
Sbjct: 255 gttggagttcttcaggctgccgccggaggagaaggagaagctgtattccgatgagccatc 314

              
Query: 265 caa 267
           |||
Sbjct: 315 caa 317
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>dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E07, full
           insert sequence
          Length = 1361

 Score =  172 bits (87), Expect = 4e-40
 Identities = 204/243 (83%)
 Strand = Plus / Plus

                                                                       
Query: 25  cgaccgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgc 84
           |||||| |||| ||||||||| || |  ||||||| ||||||||| ||||||||||||||
Sbjct: 150 cgaccggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgc 209

                                                                       
Query: 85  gtcgctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggctt 144
            ||||  |||||||   |  ||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 210 ctcgccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggctt 269

                                                                       
Query: 145 cttccagatcgtaaaccatgggatatcagaggagctgctggagaaggtgatggctgtggg 204
           ||||||| ||   ||||| |||||| |||||||||| ||||||||||||||||| |||| 
Sbjct: 270 cttccaggtcaccaaccacgggatagcagaggagctactggagaaggtgatggccgtggc 329

                                                                       
Query: 205 tctggagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatc 264
             ||||||| ||| |||| || ||||| ||||||| |||||| ||||| || ||||||||
Sbjct: 330 gttggagttcttcaggctgccgccggaggagaaggagaagctgtattccgatgagccatc 389

              
Query: 265 caa 267
           |||
Sbjct: 390 caa 392
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>dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C05, full
           insert sequence
          Length = 1361

 Score =  172 bits (87), Expect = 4e-40
 Identities = 204/243 (83%)
 Strand = Plus / Plus

                                                                       
Query: 25  cgaccgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgc 84
           |||||| |||| ||||||||| || |  ||||||| ||||||||| ||||||||||||||
Sbjct: 150 cgaccggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgc 209

                                                                       
Query: 85  gtcgctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggctt 144
            ||||  |||||||   |  ||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 210 ctcgccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggctt 269

                                                                       
Query: 145 cttccagatcgtaaaccatgggatatcagaggagctgctggagaaggtgatggctgtggg 204
           ||||||| ||   ||||| |||||| |||||||||| ||||||||||||||||| |||| 
Sbjct: 270 cttccaggtcaccaaccacgggatagcagaggagctactggagaaggtgatggccgtggc 329

                                                                       
Query: 205 tctggagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatc 264
             ||||||| ||| |||| || ||||| ||||||| |||||| ||||| || ||||||||
Sbjct: 330 gttggagttcttcaggctgccgccggaggagaaggagaagctgtattccgatgagccatc 389

              
Query: 265 caa 267
           |||
Sbjct: 390 caa 392
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>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23,
              complete sequence
          Length = 149892

 Score =  101 bits (51), Expect = 1e-18
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                          
Query: 25     cgaccgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgc 84
              |||||| |||| ||||||||| || |  ||||||| ||||||||| ||||||||||||||
Sbjct: 107950 cgaccggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgc 108009

                                                                          
Query: 85     gtcgctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggctt 144
               ||||  |||||||   |  ||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 108010 ctcgccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggctt 108069

                     
Query: 145    cttccag 151
              |||||||
Sbjct: 108070 cttccag 108076



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 94/110 (85%)
 Strand = Plus / Plus

                                                                          
Query: 158    aaccatgggatatcagaggagctgctggagaaggtgatggctgtgggtctggagtttttc 217
              ||||| |||||| |||||||||| ||||||||||||||||| ||||   ||||||| |||
Sbjct: 108348 aaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttggagttcttc 108407

                                                                
Query: 218    cggctccctccggaagagaaggcgaagctctattctgacgagccatccaa 267
               |||| || ||||| ||||||| |||||| ||||| || |||||||||||
Sbjct: 108408 aggctgccgccggaggagaaggagaagctgtattccgatgagccatccaa 108457
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 1e-18
 Identities = 108/127 (85%)
 Strand = Plus / Plus

                                                                            
Query: 25       cgaccgtccgcagctcgccgatgtggtgacggacaccaacatccccctcatcgacctcgc 84
                |||||| |||| ||||||||| || |  ||||||| ||||||||| ||||||||||||||
Sbjct: 29304904 cgaccggccgcggctcgccgaagttgccacggacagcaacatcccgctcatcgacctcgc 29304963

                                                                            
Query: 85       gtcgctagacaagcacagcatcatcgccgagatcgatcaggcctgccgcacctacggctt 144
                 ||||  |||||||   |  ||||||||||||| | ||||||||| ||||||||||||||
Sbjct: 29304964 ctcgccggacaagccgcgggtcatcgccgagattgctcaggcctgtcgcacctacggctt 29305023

                       
Query: 145      cttccag 151
                |||||||
Sbjct: 29305024 cttccag 29305030



 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 94/110 (85%)
 Strand = Plus / Plus

                                                                            
Query: 158      aaccatgggatatcagaggagctgctggagaaggtgatggctgtgggtctggagtttttc 217
                ||||| |||||| |||||||||| ||||||||||||||||| ||||   ||||||| |||
Sbjct: 29305302 aaccacgggatagcagaggagctactggagaaggtgatggccgtggcgttggagttcttc 29305361

                                                                  
Query: 218      cggctccctccggaagagaaggcgaagctctattctgacgagccatccaa 267
                 |||| || ||||| ||||||| |||||| ||||| || |||||||||||
Sbjct: 29305362 aggctgccgccggaggagaaggagaagctgtattccgatgagccatccaa 29305411
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>ref|NM_197542.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0040D23.1), mRNA
          Length = 1494

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 125 gcctgccgcacctacggcttcttccagatcgtaaaccatgg 165
           |||||||||||| |||||||||||||| | || ||||||||
Sbjct: 187 gcctgccgcacccacggcttcttccaggtggtgaaccatgg 227



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 209 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 268
           ||||| |||||||| ||  |||| ||||||||||||||||| || ||||| ||  |||| 
Sbjct: 271 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 330

                      
Query: 269 aagataaggct 279
           |||||| ||||
Sbjct: 331 aagatacggct 341
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>dbj|AK061357.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B08, full
           insert sequence
          Length = 1004

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 125 gcctgccgcacctacggcttcttccagatcgtaaaccatgg 165
           |||||||||||| |||||||||||||| | || ||||||||
Sbjct: 302 gcctgccgcacccacggcttcttccaggtggtgaaccatgg 342



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 209 gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 268
           ||||| |||||||| ||  |||| ||||||||||||||||| || ||||| ||  |||| 
Sbjct: 386 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 445

                      
Query: 269 aagataaggct 279
           |||||| ||||
Sbjct: 446 aagatacggct 456
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>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete
             sequence
          Length = 105841

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                         
Query: 209   gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 268
             ||||| |||||||| ||  |||| ||||||||||||||||| || ||||| ||  |||| 
Sbjct: 83216 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 83275

                        
Query: 269   aagataaggct 279
             |||||| ||||
Sbjct: 83276 aagatacggct 83286



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 125   gcctgccgcacctacggcttcttccag 151
             |||||||||||| ||||||||||||||
Sbjct: 83036 gcctgccgcacccacggcttcttccag 83062
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>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence,
            complete sequence
          Length = 134102

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                        
Query: 209  gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 268
            ||||| |||||||| ||  |||| ||||||||||||||||| || ||||| ||  |||| 
Sbjct: 7862 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 7921

                       
Query: 269  aagataaggct 279
            |||||| ||||
Sbjct: 7922 aagatacggct 7932



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 125  gcctgccgcacctacggcttcttccag 151
            |||||||||||| ||||||||||||||
Sbjct: 7682 gcctgccgcacccacggcttcttccag 7708
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                            
Query: 209      gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 268
                ||||| |||||||| ||  |||| ||||||||||||||||| || ||||| ||  |||| 
Sbjct: 20367714 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 20367773

                           
Query: 269      aagataaggct 279
                |||||| ||||
Sbjct: 20367774 aagatacggct 20367784



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 125      gcctgccgcacctacggcttcttccag 151
                |||||||||||| ||||||||||||||
Sbjct: 20367534 gcctgccgcacccacggcttcttccag 20367560
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.061
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                            
Query: 209      gagtttttccggctccctccggaagagaaggcgaagctctattctgacgagccatccaaa 268
                ||||| |||||||| ||  |||| ||||||||||||||||| || ||||| ||  |||| 
Sbjct: 20378986 gagttcttccggctgccggcggaggagaaggcgaagctctactccgacgatccggccaag 20379045

                           
Query: 269      aagataaggct 279
                |||||| ||||
Sbjct: 20379046 aagatacggct 20379056



 Score = 46.1 bits (23), Expect = 0.061
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 125      gcctgccgcacctacggcttcttccag 151
                |||||||||||| ||||||||||||||
Sbjct: 20378806 gcctgccgcacccacggcttcttccag 20378832
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>gb|AF100663.2| Caenorhabditis elegans cosmid K08B4, complete sequence
          Length = 34919

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 172   agaggagctgctggagaaggtg 193
             ||||||||||||||||||||||
Sbjct: 23701 agaggagctgctggagaaggtg 23680
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>gb|U49795.1|CEU49795 Caenorhabditis elegans DNA-binding protein LAG-1 (lag-1) gene,
            complete cds
          Length = 16512

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 172  agaggagctgctggagaaggtg 193
            ||||||||||||||||||||||
Sbjct: 4679 agaggagctgctggagaaggtg 4658
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>emb|CR684812.2|CNS0FRCO Tetraodon nigroviridis full-length cDNA
          Length = 1265

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 172 agaggagctgctggagaagg 191
           ||||||||||||||||||||
Sbjct: 960 agaggagctgctggagaagg 979
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>emb|CR657739.2|CNS0F6HD Tetraodon nigroviridis full-length cDNA
          Length = 887

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 172 agaggagctgctggagaagg 191
           ||||||||||||||||||||
Sbjct: 578 agaggagctgctggagaagg 597
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 220     gctccctccggaagagaaggcgaagctc 247
               |||| ||||||||||| |||||||||||
Sbjct: 1339386 gctcactccggaagagcaggcgaagctc 1339413
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>ref|XM_342076.2| PREDICTED: Rattus norvegicus dynein, axonemal, heavy chain 3
            (Dnahc3), mRNA
          Length = 4911

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 172  agaggagctgctggagaagg 191
            ||||||||||||||||||||
Sbjct: 1917 agaggagctgctggagaagg 1936
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 37      gctcgccgatgtggtgacgg 56
               ||||||||||||||||||||
Sbjct: 3398608 gctcgccgatgtggtgacgg 3398589
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>emb|Z71670.1|SCYNR055C S.cerevisiae chromosome XIV reading frame ORF YNR055c
          Length = 7310

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 245  ctctattctgacgagccatccaaa 268
            ||||||| ||||||||||||||||
Sbjct: 4560 ctctattgtgacgagccatccaaa 4583
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>gb|U45318.1|REU45318 Rhizobium etli PopQ (popQ) gene, partial cds; and LipA (lipA), CycH
            (cycH), CycJ (cycJ), CycK (cycK), and CycL (cycL) genes,
            complete cds
          Length = 5130

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 220  gctccctccggaagagaaggcgaagctc 247
            |||| ||||||||||| |||||||||||
Sbjct: 5023 gctcactccggaagagcaggcgaagctc 5050
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>gb|L42348.1|YSCHOL1G Saccharomyces cerevisiae (clone pMW18) HOL1 gene, complete cds
          Length = 2751

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 245  ctctattctgacgagccatccaaa 268
            ||||||| ||||||||||||||||
Sbjct: 1949 ctctattgtgacgagccatccaaa 1926
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>gb|AC171502.2| Mus musculus BAC clone RP23-242G4 from chromosome 6, complete sequence
          Length = 209147

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    tggagaaggtgatggctgtg 202
              ||||||||||||||||||||
Sbjct: 122656 tggagaaggtgatggctgtg 122675


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,083,400
Number of Sequences: 3902068
Number of extensions: 2083400
Number of successful extensions: 42994
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42838
Number of HSP's gapped (non-prelim): 151
length of query: 286
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 264
effective length of database: 17,147,199,772
effective search space: 4526860739808
effective search space used: 4526860739808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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