ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet04g12 |
|---|---|
| Clone Library Name | barley_pub |
>YSM1_CAEEL (Q10122) Hypothetical WD-repeat protein F52C9.1| Length = 1336 Score = 31.2 bits (69), Expect = 0.61 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 207 LVAAVTRFPHLAGRFAADDHGRKCFHL 287 ++A + PHLAGRF DH R+C L Sbjct: 571 VMAQIVLAPHLAGRFDDPDHIRRCIQL 597
>SMA1_LOXIN (P83045) Sphingomyelinase P1 precursor (EC 3.1.4.41) (SMase P1)| (Dermonecrotic protein 1) (LiD1) Length = 315 Score = 31.2 bits (69), Expect = 0.61 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +3 Query: 93 GGKKVPLTVFDRASTDGYIPAVFAWNAP--APTNDALKAGLVAAVTRFP 233 G +V V +R S +G+I V+ W + T DAL AG+ +T +P Sbjct: 236 GLSRVNAAVANRDSANGFINKVYYWTVDKRSTTRDALDAGVDGIMTNYP 284
>SAT_CHRVI (O66036) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 397 Score = 30.8 bits (68), Expect = 0.80 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 4/95 (4%) Frame = -3 Query: 280 KHFRPWSSAANLPARCGNLVTAATRPALSASLVGAGAFHAKTAGM*PS---VEARSKTVR 110 +H R S A +LP+ V +++ A +A ++GAG F M + A+S T+ Sbjct: 20 QHHRLSSEAESLPS-----VIVSSQAAGNAVMLGAGYFSPLDGFMNLADALSSAQSMTLT 74 Query: 109 -GTFFPPPPADSCEGSSTVLCVISTVTAIAGAGKV 8 G FFP P +LC++ + AIAGA ++ Sbjct: 75 DGRFFPVP----------LLCLLESADAIAGATRI 99
>SLIK5_HUMAN (O94991) SLIT and NTRK-like protein 5 precursor (Leucine-rich| repeat-containing protein 11) Length = 958 Score = 30.4 bits (67), Expect = 1.0 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +3 Query: 6 VTLPAPAMAVTVEITQSTVLEPSQESAGGGGKKVPLTVFDRASTDGYIPAVF 161 + +PA AVT + ++ P+ AGGG VPL+V + +I +VF Sbjct: 628 IQVPARTSAVTPAVRLNSTGAPASLGAGGGASSVPLSVLILSLLLVFIMSVF 679
>SURE_SYNSC (Q3AL65) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 269 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = +3 Query: 24 AMAVTVEITQSTVLEPSQE-SAGGGGKKVPLTVFDRASTDGYIPAVFAWNAPAPTNDALK 200 A A Q TV+ P QE SA G G + + + + + P V AW D +K Sbjct: 23 AAAAAARGHQVTVVCPDQERSATGHGLTLQTPIRAERADELFAPGVTAWACSGTPADCMK 82 Query: 201 AGLVAAVTRFPHL 239 L V P+L Sbjct: 83 LALFELVKEKPNL 95
>SURE_SYNPX (Q7U5U4) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 266 Score = 29.3 bits (64), Expect = 2.3 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +3 Query: 9 TLPAPAMAVTVEITQSTVLEPSQE-SAGGGGKKVPLTVFDRASTDGYIPAVFAWNAPAPT 185 TL A A+A ++T V+ P QE SA G G + + + + ++P V AW Sbjct: 18 TLAAAAVARGHDVT---VVCPDQERSATGHGLTLQTPIRAERADELFVPGVTAWACSGTP 74 Query: 186 NDALKAGLVAAVTRFPHL 239 D +K L V P L Sbjct: 75 ADCMKLALFELVKDKPDL 92
>SAP47_DROME (Q960T2) Synapse-associated protein of 47 kDa| Length = 551 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 14/74 (18%) Frame = +3 Query: 18 APAMAVTVEITQSTVLEPSQESAGGG--------GKKVP--LTVFDR--ASTDGYIPAVF 161 APA + +VE T S+ ++P +A GG GK++P ++ D + G++ + Sbjct: 36 APAASTSVEATASSAVDPEAAAAAGGEGLEGEEAGKRLPKSASLVDSLVSEATGWLGSAK 95 Query: 162 AW--NAPAPTNDAL 197 W NA P+ A+ Sbjct: 96 GWLGNASIPSMPAM 109
>FADA_PSEAE (Q9HZJ3) 3-ketoacyl-CoA thiolase (EC 2.3.1.16) (Fatty oxidation| complex beta subunit) (Beta-ketothiolase) (Acetyl-CoA acyltransferase) Length = 391 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = +3 Query: 108 PLTVFDRASTDGYIPAVFAWNAPAPTNDALK-AGLVAAVTRFPHLAGRFAA 257 P+ V + G PA+ + TN ALK AGL A F L FAA Sbjct: 267 PMAVIRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAA 317
>GLNA_SHIFL (P0A9C8) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 468 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -3 Query: 115 VRGTFFPPPPADSCEGSSTVLCVI 44 V+G +FP PP DS + + +C++ Sbjct: 175 VKGGYFPVPPVDSAQDIRSEMCLV 198
>GLNA_SALTY (P0A1P6) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 468 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -3 Query: 115 VRGTFFPPPPADSCEGSSTVLCVI 44 V+G +FP PP DS + + +C++ Sbjct: 175 VKGGYFPVPPVDSAQDIRSEMCLV 198
>GLNA_SALTI (P0A1P7) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 468 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -3 Query: 115 VRGTFFPPPPADSCEGSSTVLCVI 44 V+G +FP PP DS + + +C++ Sbjct: 175 VKGGYFPVPPVDSAQDIRSEMCLV 198
>GLNA_ECOLI (P0A9C5) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 468 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -3 Query: 115 VRGTFFPPPPADSCEGSSTVLCVI 44 V+G +FP PP DS + + +C++ Sbjct: 175 VKGGYFPVPPVDSAQDIRSEMCLV 198
>GLNA_ECOL6 (P0A9C6) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 468 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -3 Query: 115 VRGTFFPPPPADSCEGSSTVLCVI 44 V+G +FP PP DS + + +C++ Sbjct: 175 VKGGYFPVPPVDSAQDIRSEMCLV 198
>GLNA_ECO57 (P0A9C7) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 468 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -3 Query: 115 VRGTFFPPPPADSCEGSSTVLCVI 44 V+G +FP PP DS + + +C++ Sbjct: 175 VKGGYFPVPPVDSAQDIRSEMCLV 198
>YM14_YEAST (Q04223) Hypothetical 35.3 kDa protein in POM152-REC114 intergenic| region Length = 302 Score = 27.7 bits (60), Expect = 6.8 Identities = 12/51 (23%), Positives = 24/51 (47%) Frame = +3 Query: 141 GYIPAVFAWNAPAPTNDALKAGLVAAVTRFPHLAGRFAADDHGRKCFHLND 293 G+I + N P + L +++ PHL ++ ++ + CFH+ D Sbjct: 167 GHIYLSYELNLAKPDRAIFQYALDDIISKQPHLLEKYTREEILQHCFHIGD 217
>SMAD_LOXAR (Q7Z1Y7) Sphingomyelinase D precursor (EC 3.1.4.41) (SMase D)| (Dermonecrotic enzyme) Length = 320 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +3 Query: 93 GGKKVPLTVFDRASTDGYIPAVFAWNAP--APTNDALKAGLVAAVTRFP 233 G +V V +R S++GYI V+ W T +AL AG+ + +P Sbjct: 241 GLDRVRKAVANRDSSNGYINKVYYWTVDKRQSTKNALDAGVDGIMPNYP 289
>KAC6_RABIT (P03984) Ig kappa chain b5 variant C region| Length = 104 Score = 27.3 bits (59), Expect = 8.8 Identities = 9/18 (50%), Positives = 14/18 (77%) Frame = -3 Query: 100 FPPPPADSCEGSSTVLCV 47 FPP PA+ G++T++CV Sbjct: 10 FPPSPAELATGTATIVCV 27
>GLNA_THIFE (P07804) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) Length = 468 Score = 27.3 bits (59), Expect = 8.8 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -3 Query: 115 VRGTFFPPPPADSCEGSSTVLCV 47 V+G +FP PP DS + + +C+ Sbjct: 176 VKGGYFPVPPVDSAQDLRSAMCL 198
>TAF9_DROME (Q27272) Transcription initiation factor TFIID subunit 9| (Transcription initiation factor TFIID 42 kDa subunit) (TAFII-42) (TAFII40) (p42) (Protein enhancer of yellow 1) Length = 278 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 3 LVTLPAPAMAVTVEITQSTVLEPSQESAGGGGKKV 107 +VT+P P + T T TV S S GGGG++V Sbjct: 179 VVTIPKPVIKFTTTTTTKTV-GSSGGSGGGGGQEV 212
>PLK1_HUMAN (P53350) Serine/threonine-protein kinase PLK1 (EC 2.7.11.21)| (Polo-like kinase 1) (PLK-1) (Serine/threonine-protein kinase 13) (STPK13) Length = 603 Score = 27.3 bits (59), Expect = 8.8 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +3 Query: 147 IPAVFAWNAPA--PTNDALKAGLVAAVTRFPHLAGRFAADDHGRKCFHLNDA 296 +P V A APA P + LV +R ++ GRF KCF ++DA Sbjct: 22 VPGVAAPGAPAAAPPAKEIPEVLVDPRSRRRYVRGRFLGKGGFAKCFEISDA 73
>AGLU_HORVU (Q43763) Alpha-glucosidase precursor (EC 3.2.1.20) (Maltase)| Length = 877 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = +3 Query: 6 VTLPAPAMAVTVEITQSTVLEPSQESA 86 V LPAPA V V +T T+L P Q+SA Sbjct: 707 VRLPAPADTVNVHLTGGTIL-PLQQSA 732
>PHYK_WHEAT (Q2N2K3) Probable phytol kinase, chloroplast precursor (EC 2.7.-.-)| Length = 300 Score = 27.3 bits (59), Expect = 8.8 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 259 SAANLPARCGNLVTAATRPALSASLVGAGAFHAKTAG 149 +AA +PA G L +A+ PA S L GA TAG Sbjct: 37 AAAGVPAVAGALAASASTPAASMLLRDGGATLLVTAG 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,532,431 Number of Sequences: 219361 Number of extensions: 558288 Number of successful extensions: 2472 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2471 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
