ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet04g06 |
|---|---|
| Clone Library Name | barley_pub |
>PROB_GLUOX (Q5FUL1) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)| (GK) Length = 378 Score = 32.3 bits (72), Expect = 0.32 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 66 HHPSKTKDKAKMGSRYEVEVTVGAARDLKNVNWRNGDLKPYAVLWIDAGAR 218 HHP + + + + + G+AR W G L+P L IDAGAR Sbjct: 249 HHPLRRLQNGGLCTWFMAQTDAGSARK----RWIGGSLQPKGTLTIDAGAR 295
>YLZ5_CAEEL (P34418) Hypothetical protein F42H10.5| Length = 810 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +3 Query: 72 PSKTKDKAKMGSRYEVEVTVGA-ARDLKNVNWRNGDLKPYAVLWIDAGARCSTRVDLDNG 248 P+ T A + + + +T+ A + +++ WRN D K + A A ++ VD + Sbjct: 245 PTPTSSNAGLNALQQAGLTLAANGQIIQSKKWRNDDKKQKELCTKFALALATSHVDFEVV 304 Query: 249 ENPTWDD 269 +NP W + Sbjct: 305 QNPLWKE 311
>TOP1_HAEIN (P43012) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 868 Score = 29.3 bits (64), Expect = 2.7 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%) Frame = +3 Query: 72 PSKTKDKAK-MGSRYEVEVTVGAARDLKNVNWRNGD-LKPYAVLWIDAGARCSTRVD 236 P+K K K +GS+Y V+ +VG RDL V G+ KP + +DA + + + Sbjct: 11 PAKAKTINKYLGSQYVVKSSVGHIRDLPTVGSSTGEKAKPISTKGMDAEEKAKIKAE 67
>Y1099_VIBCH (Q9KT06) UPF0208 membrane protein VC1099| Length = 150 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -3 Query: 175 SPLRQLTFLRSRAAPTVTSTSYREPIFALSLVLLGWWWL 59 S L Q+ F ++A P + +FA+SL L G WWL Sbjct: 54 SVLTQMVFANTQAMPQAIVVA----LFAMSLPLQGIWWL 88
>TOP1_PASMU (Q9CN30) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)| (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase) Length = 868 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 72 PSKTKDKAK-MGSRYEVEVTVGAARDLKNVNWRNGD 176 P+K K K +GS Y V+ +VG RDL V NG+ Sbjct: 11 PAKAKTINKYLGSNYVVKSSVGHIRDLPTVGSSNGE 46
>AKAP1_RAT (O88884) A kinase anchor protein 1, mitochondrial precursor| (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase anchor protein 121 kDa) (AKAP 121) (Dual specificity A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protei Length = 854 Score = 28.1 bits (61), Expect = 6.1 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -3 Query: 85 LVLLGWWWLFS 53 L LLGWWW FS Sbjct: 17 LALLGWWWFFS 27
>AKAP1_HUMAN (Q92667) A kinase anchor protein 1, mitochondrial precursor| (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase anchor protein 149 kDa) (AKAP 149) (Dual specificity A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor prot Length = 903 Score = 28.1 bits (61), Expect = 6.1 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -3 Query: 85 LVLLGWWWLFS 53 L LLGWWW FS Sbjct: 17 LALLGWWWFFS 27
>AKAP1_MOUSE (O08715) A kinase anchor protein 1, mitochondrial precursor| (Protein kinase A-anchoring protein 1) (PRKA1) (Dual-specificity A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protein) (S-AKAP) Length = 857 Score = 28.1 bits (61), Expect = 6.1 Identities = 9/11 (81%), Positives = 9/11 (81%) Frame = -3 Query: 85 LVLLGWWWLFS 53 L LLGWWW FS Sbjct: 17 LALLGWWWFFS 27
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) Length = 4543 Score = 27.7 bits (60), Expect = 8.0 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = +3 Query: 153 NVNWRNG---DLKPYAVLWIDAGARCSTRVDLDNGEN 254 +++W NG D + + W DA R+DL+ GEN Sbjct: 2046 SISWPNGISVDYEDGKLYWCDARTDKIERIDLETGEN 2082
>LRP1B_MOUSE (Q9JI18) Low-density lipoprotein receptor-related protein 1B| precursor (Low-density lipoprotein receptor-related protein-deleted in tumor) (LRP-DIT) Length = 4599 Score = 27.7 bits (60), Expect = 8.0 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%) Frame = +3 Query: 90 KAKM-GSRYEVEVTVGAARDLKNVNWRNG---DLKPYAVLWIDAGARCSTRVDLDNGEN 254 KA++ GS + V+VG + W NG D + + W DA + R+DLD G N Sbjct: 2023 KARLDGSEKVMIVSVG-------ITWPNGISIDYEENKLYWCDARSDKIERIDLDTGAN 2074
>Y2222_VIBVU (Q8DAH7) UPF0208 membrane protein VV1_2222| Length = 150 Score = 27.7 bits (60), Expect = 8.0 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 175 SPLRQLTFLRSRAAPTVTSTSYREPIFALSLVLLGWWWL 59 S L Q+ F +A P + +FALSL L G WWL Sbjct: 54 SVLTQMAFNNYQALPQAIVMA----LFALSLPLQGMWWL 88
>Y2132_VIBVY (Q7MJM9) UPF0208 membrane protein VV2132| Length = 150 Score = 27.7 bits (60), Expect = 8.0 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 175 SPLRQLTFLRSRAAPTVTSTSYREPIFALSLVLLGWWWL 59 S L Q+ F +A P + +FALSL L G WWL Sbjct: 54 SVLTQMAFNNYQALPQAIVMA----LFALSLPLQGMWWL 88
>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E receptor) (APOER) (CD91 antigen) Length = 4544 Score = 27.7 bits (60), Expect = 8.0 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = +3 Query: 153 NVNWRNG---DLKPYAVLWIDAGARCSTRVDLDNGEN 254 +++W NG D + + W DA R+DL+ GEN Sbjct: 2050 SISWPNGISVDYQDGKLYWCDARTDKIERIDLETGEN 2086
>AROK_ARATH (Q9SJ05) Probable shikimate kinase, chloroplast precursor (EC| 2.7.1.71) Length = 292 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +3 Query: 60 NHHHPSKTKDKAKMGSRYEVEVTVGAARDLKNVNWR 167 N +T K+ SRY+V V+ G ++ +NW+ Sbjct: 156 NFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWK 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 24,435,729 Number of Sequences: 219361 Number of extensions: 402469 Number of successful extensions: 1843 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1805 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1843 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
