>gb|AY792974.1| Triticum aestivum meiosis 5 (M5) mRNA, complete cds
          Length = 1248

 Score =  272 bits (137), Expect = 8e-70
 Identities = 205/227 (90%), Gaps = 3/227 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaacttccccggccacggcggcaccaccgtgccgcttccttcgcacggaggctcatccg 60
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct: 206 acaacttccccggccacgggggcaccaccgtgccgcttccctcgcacggaggctcctccg 265

                                                                       
Query: 61  gcaccccgccttaccacggaggctccggcaccacgccgtcgcacggcggctccggctcga 120
           |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 gcacgccgccttaccacggaggctccggcactacgccgtcgcacggcggctccggctcga 325

                                                                       
Query: 121 ctccctcgcacagcggctccgggt---cggtgcctgacccgtcgcacggcggttccggct 177
           |||| |||||||||||||||||||   ||||||||||||||||||| ||||| | |||  
Sbjct: 326 ctccgtcgcacagcggctccgggtcgacggtgcctgacccgtcgcatggcggatacggga 385

                                                          
Query: 178 cgactccctcgcacagtggctccgggtcggtgcctgacccgtcgcac 224
           || | || |||||| | ||||| || ||| |||||||||||||||||
Sbjct: 386 cgccgccttcgcacggcggctctggttcgctgcctgacccgtcgcac 432



 Score =  260 bits (131), Expect = 3e-66
 Identities = 167/179 (93%)
 Strand = Plus / Plus

                                                                       
Query: 219 tcgcacgggggctctggttcgttgcctgacccgtcgcacagcggaggaggttacgggtcc 278
           |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 394 tcgcacggcggctctggttcgctgcctgacccgtcgcacagcggaggaggttacggatcc 453

                                                                       
Query: 279 actccggatgcgccgtcacacagcggaggcgcctacgggagctccccgacgccttccact 338
           |||||||| ||||| || ||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 454 actccggacgcgccatcccacggcggaggcgcgtacgggagctccccgacgccttccact 513

                                                                      
Query: 339 ggcggtgcctacggcagctcacctacgccgtcccacgacggaggcgcatacggcagctc 397
           ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 514 ggcggtgcctacggcagctcacccacgccgtcccacgacgggggcgcctacgggagctc 572



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 289 cgccgtcacacagcggaggcgcctacgggagctccccgacgcc 331
           ||||||| |||  ||| ||||||||||||||||||||||||||
Sbjct: 539 cgccgtcccacgacgggggcgcctacgggagctccccgacgcc 581



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 126 tcgcacagcggctccgggtcggtgcctgacccgtcgcacggcgg 169
           |||||| ||||||| || ||| ||||||||||||||||| ||||
Sbjct: 394 tcgcacggcggctctggttcgctgcctgacccgtcgcacagcgg 437



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 345 gcctacggcagctcacctacgccgtcccacgacggaggc 383
           |||||||| ||||| || |||||| ||||||||||||||
Sbjct: 559 gcctacgggagctccccgacgccggcccacgacggaggc 597

>ref|NM_188299.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1806

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 84   tccggcaccacgccgtcgcacggcggc 110
            ||||| |||||||||||||||||||||
Sbjct: 1153 tccgggaccacgccgtcgcacggcggc 1179



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 6    ttccccggccacggcggcaccac 28
            |||||||||||||||||||||||
Sbjct: 1087 ttccccggccacggcggcaccac 1109



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 288  gcgccgtcacacagcggaggcgcctacgggagctcccc 325
            |||||||| ||| | || ||||||||||||||||||||
Sbjct: 1306 gcgccgtcccacggtggcggcgcctacgggagctcccc 1343

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 6       ttccccggccacggcggcaccac 28
               |||||||||||||||||||||||
Sbjct: 5549718 ttccccggccacggcggcaccac 5549696



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 84      tccggcaccacgccgtcgcacggcggc 110
               ||||| |||||||||||||||||||||
Sbjct: 5549652 tccgggaccacgccgtcgcacggcggc 5549626



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 288     gcgccgtcacacagcggaggcgcctacgggagctcccc 325
               |||||||| ||| | || ||||||||||||||||||||
Sbjct: 5549499 gcgccgtcccacggtggcggcgcctacgggagctcccc 5549462

>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1015E06
          Length = 164583

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 6      ttccccggccacggcggcaccac 28
              |||||||||||||||||||||||
Sbjct: 146558 ttccccggccacggcggcaccac 146536



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 84     tccggcaccacgccgtcgcacggcggc 110
              ||||| |||||||||||||||||||||
Sbjct: 146492 tccgggaccacgccgtcgcacggcggc 146466



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 288    gcgccgtcacacagcggaggcgcctacgggagctcccc 325
              |||||||| ||| | || ||||||||||||||||||||
Sbjct: 146339 gcgccgtcccacggtggcggcgcctacgggagctcccc 146302

>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0489A05
          Length = 158815

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 6     ttccccggccacggcggcaccac 28
             |||||||||||||||||||||||
Sbjct: 15191 ttccccggccacggcggcaccac 15169



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 84    tccggcaccacgccgtcgcacggcggc 110
             ||||| |||||||||||||||||||||
Sbjct: 15125 tccgggaccacgccgtcgcacggcggc 15099



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 288   gcgccgtcacacagcggaggcgcctacgggagctcccc 325
             |||||||| ||| | || ||||||||||||||||||||
Sbjct: 14972 gcgccgtcccacggtggcggcgcctacgggagctcccc 14935

>dbj|AK073568.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042J01, full
           insert sequence
          Length = 1185

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 84  tccggcaccacgccgtcgcacggcggc 110
           ||||| |||||||||||||||||||||
Sbjct: 275 tccgggaccacgccgtcgcacggcggc 301



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 6   ttccccggccacggcggcaccac 28
           |||||||||||||||||||||||
Sbjct: 209 ttccccggccacggcggcaccac 231



 Score = 44.1 bits (22), Expect = 0.35
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 288 gcgccgtcacacagcggaggcgcctacgggagctcccc 325
           |||||||| ||| | || ||||||||||||||||||||
Sbjct: 428 gcgccgtcccacggtggcggcgcctacgggagctcccc 465

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 98      gtcgcacggcggctccggctcg 119
               ||||||||||||||||||||||
Sbjct: 1202065 gtcgcacggcggctccggctcg 1202086

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 17      cggcggcaccaccgtgccgct 37
               |||||||||||||||||||||
Sbjct: 6573287 cggcggcaccaccgtgccgct 6573307

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      acttccccggccacggcggc 23
              ||||||||||||||||||||
Sbjct: 386930 acttccccggccacggcggc 386949

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      caacttccccggccacggcg 21
              ||||||||||||||||||||
Sbjct: 234694 caacttccccggccacggcg 234713

>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence
          Length = 357655

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     cacgccgtcgcacggcggct 111
              ||||||||||||||||||||
Sbjct: 140066 cacgccgtcgcacggcggct 140085

>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     acttccccggccacggcggc 23
             ||||||||||||||||||||
Sbjct: 44963 acttccccggccacggcggc 44982

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             2/14
          Length = 324050

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     acttccccggccacggcggc 23
             ||||||||||||||||||||
Sbjct: 44900 acttccccggccacggcggc 44919

>gb|U91845.1|MBU91845 Mycobacterium bovis tRNA-Gly gene, complete sequence, and
           pyrrolidone carboxyl peptidase (pcp) gene, complete cds
          Length = 1810

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 4   acttccccggccacggcggc 23
           ||||||||||||||||||||
Sbjct: 714 acttccccggccacggcggc 733

>gb|DQ354110.1| Streptomyces violaceusniger strain DSM 4137 polyether nigericin
             biosynthetic gene cluster, complete sequence
          Length = 95700

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     tccccggccacggcggcaccaccg 30
             ||||||||||| ||||||||||||
Sbjct: 53886 tccccggccaccgcggcaccaccg 53863


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,526,587
Number of Sequences: 3902068
Number of extensions: 1526587
Number of successful extensions: 27613
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27277
Number of HSP's gapped (non-prelim): 331
length of query: 405
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 383
effective length of database: 17,147,199,772
effective search space: 6567377512676
effective search space used: 6567377512676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)