ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet04e09 |
|---|---|
| Clone Library Name | barley_pub |
>PGLR2_JUNAS (Q9FY19) Polygalacturonase precursor (PG) (EC 3.2.1.15) (Pectinase)| (Major pollen allergen Jun a 2) Length = 507 Score = 30.0 bits (66), Expect = 1.5 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = +1 Query: 13 GPAEPHLSYKIHQHSSSYPQPRDFPSEQLYHAYFAIQRF 129 GP +PH S+K+ ++YP P + + +++ + + F Sbjct: 111 GPCQPHFSFKVDGTIAAYPDPAKWKNSKIWMHFARLTDF 149
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +3 Query: 93 AALPCILRHPAIQEHHHLRPQKRNQHLDRPRH 188 AALP HP HHH P + + H P H Sbjct: 999 AALPPAHHHPPHHHHHHAPPPQPHHHHAHPPH 1030
>YRPE_BACSU (O05410) Hypothetical protein yrpE| Length = 251 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/35 (31%), Positives = 19/35 (54%) Frame = +1 Query: 46 HQHSSSYPQPRDFPSEQLYHAYFAIQRFKNTITSD 150 H+HS + D +E++Y YF + K+ + SD Sbjct: 59 HEHSHDHSHAHDEETEKIYEGYFKNSQVKDRLLSD 93
>3MGH_STAAW (P65416) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 154 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 267 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAS (Q6G6X6) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 154 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 267 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAR (Q6GE90) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 154 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 267 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAN (P65415) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 154 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 267 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAM (P65414) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 154 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 267 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>3MGH_STAAC (Q5HDL2) Putative 3-methyladenine DNA glycosylase (EC 3.2.2.-)| Length = 202 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 154 KNVTSTWTGHDICATTSYLGFNCGAPHGQASNLT--VTSV 267 ++ T T+TG+ I T +YLG N A HG +T VTS+ Sbjct: 23 QDTTQTYTGY-IVETEAYLGLNDRAAHGYGGKITPKVTSL 61
>ZNF92_HUMAN (Q03936) Zinc finger protein 92 (Zinc finger protein HTF12)| Length = 586 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Frame = +1 Query: 157 NVTSTWTGHDICATT--SYLGFNCGAPHGQASNLTVTSVIFDG 279 N +S +T H I T SY CG Q+SNLT +I+ G Sbjct: 491 NQSSIFTKHKIIHTEGKSYKCEKCGNAFNQSSNLTARKIIYTG 533
>CHRA_PSEAE (P14285) Chromate transport protein| Length = 416 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/60 (30%), Positives = 26/60 (43%) Frame = -3 Query: 293 EHRPKPSKMTDVTVRLLACPCGAPQLKPR*LVVAQMSWPVQVLVTFLGSEVMVFLNRWMA 114 E +PSK TD T + P PQL R L ++W V + +V RW++ Sbjct: 6 EESYRPSKATDATTEAVPPPMSYPQLFARFLKFGLLAWGGPVAQIDMLRRELVDEERWIS 65
>VTS1_EMENI (Q5BGC4) Protein vts1| Length = 611 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = +1 Query: 151 PKNVTSTWTGHDICATTSYLGFNCGAPHGQASNLTVTS 264 P NV ++W T+ G GAPH Q S++ + Sbjct: 332 PYNVNASWASMTNTPMTATFGSQLGAPHQQGSDMVANA 369
>CTXA_CHIQU (P58762) Toxin A precursor (CqTX-A)| Length = 462 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%) Frame = +1 Query: 64 YPQPRDFPSEQLYHAYFAIQ-----RFKNTITSDPKNVTSTWTGHDICATTSYLGFNCGA 228 YP+ R+ S++++ + ++ R K +T + W + +C++ YL C Sbjct: 293 YPRERNEQSQKIFKFFDLMKVKYDDRLKQDLTGIQVFSSLHWPNYFLCSSKDYLALICTK 352 Query: 229 PHG 237 P+G Sbjct: 353 PYG 355
>K502_ACTCH (P43394) Fruit protein PKIWI502| Length = 317 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +3 Query: 9 SRPR*ATPVL*DTPAFFLVPTAT*LPKRAALPCILRHPAIQEHHHLR 149 SRP + P L P+ L + + P LRHP ++ HHH R Sbjct: 6 SRPSLSRPSLSRHPSLTLHSSLSHAPPHHRPVAFLRHPTLRYHHHGR 52
>RDRP_ORSVS (Q84133) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -2 Query: 258 HREVTRLSMRCPA 220 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961
>RDRP_ORSVC (P89659) RNA-directed RNA polymerase (EC 2.7.7.48) (183 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (126 kDa protein)] Length = 1612 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/13 (84%), Positives = 12/13 (92%) Frame = -2 Query: 258 HREVTRLSMRCPA 220 HREV RLS+RCPA Sbjct: 949 HREVRRLSLRCPA 961
>YD3M_HERAU (P25280) Hypothetical 68.4 kDa protein in HgiDIIM 3'region (ORF68)| Length = 611 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +1 Query: 70 QPRDFPSEQLYHAYFA 117 +P D P+EQ YH YFA Sbjct: 259 RPSDIPNEQPYHIYFA 274
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/27 (37%), Positives = 11/27 (40%) Frame = +3 Query: 117 HPAIQEHHHLRPQKRNQHLDRPRHLRH 197 HP HHH P + HL H H Sbjct: 97 HPHPHHHHHHHPPHHHHHLGHHHHHHH 123 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +3 Query: 120 PAIQEHHHLRPQKRNQHLDRPRHLRH 197 P +EHHH P + H P H H Sbjct: 88 PHHEEHHHHHPHPHHHHHHHPPHHHH 113
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = +3 Query: 114 RHPAIQEHHH---LRPQKRNQHLDRPRHLRHDE 203 +HP Q+HHH L PQ+ +Q P L H + Sbjct: 297 QHPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQ 329
>PHLA1_RAT (Q9QZA1) Pleckstrin homology-like domain family A member 1| (Proline- and glutamine-rich protein) (PQR protein) Length = 263 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +1 Query: 25 PHLSYKIHQHSSSYPQPRDFP-SEQLYHAY 111 PHL H H+ S+P P P QL HA+ Sbjct: 214 PHLYPHPHPHAHSHPHPHPHPHPHQLQHAH 243
>PPA1_ASPNG (P20584) Phosphate-repressible acid phosphatase precursor (EC| 3.1.3.2) (Acid phosphatase PII) Length = 436 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 81 LPKRAALPCILRHPAIQEHHHLRPQKRNQHLDRPRHLRH 197 L RA P IL P ++ H L PQ++ H P H RH Sbjct: 399 LSSRATAPSIL--PPCEQQHLLCPQRQVHH---PHHQRH 432
>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)| (dPAS1) Length = 1027 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/37 (35%), Positives = 25/37 (67%) Frame = +3 Query: 129 QEHHHLRPQKRNQHLDRPRHLRHDELPRLQLRGTAWT 239 Q HHH++ Q+++Q+ + +H +H +L + QL+ T T Sbjct: 546 QSHHHMQQQQQHQN-QQQQHQQHQQLQQ-QLQHTVGT 580
>DPOD2_XENLA (O93610) DNA polymerase delta subunit 2 (EC 2.7.7.7) (XlCDC1)| Length = 463 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = +3 Query: 102 PCILRHPAIQEHHHLRPQKRNQHL--DRPRHLRHDELPRLQLRG 227 P ILR I E H+L PQ Q D + DEL R++L G Sbjct: 105 PSILRE--ISEEHNLLPQPARQKYISDSDELILEDELQRIKLEG 146 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,717,298 Number of Sequences: 219361 Number of extensions: 940602 Number of successful extensions: 2775 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2767 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
