ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet04c09 |
|---|---|
| Clone Library Name | barley_pub |
>SLY1_ARATH (Q9SL48) SEC1-family transport protein SLY1 (AtSLY1)| Length = 627 Score = 126 bits (317), Expect = 1e-29 Identities = 63/90 (70%), Positives = 71/90 (78%), Gaps = 2/90 (2%) Frame = +2 Query: 5 TRAVEALMEGKPNPEVDNYLLFDPRAPKSGTAG--QFRGPFREAIVFMIGGGNYIECRSL 178 TR VEAL EGKPNPE+D+Y DPRAPKS ++G +GPFREAIVFMIGGGNY+E SL Sbjct: 516 TRTVEALTEGKPNPEIDSYRFLDPRAPKSSSSGGSHVKGPFREAIVFMIGGGNYVEYGSL 575 Query: 179 TELTQRSQTTKQVIYGATEILNGVEFIQQL 268 ELTQR T K VIYGATEILNG E ++QL Sbjct: 576 QELTQRQLTVKNVIYGATEILNGGELVEQL 605
>SCFD1_MOUSE (Q8BRF7) Sec1 family domain-containing protein 1 (Syntaxin-binding| protein 1-like 2) Length = 639 Score = 84.3 bits (207), Expect = 7e-17 Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%) Frame = +2 Query: 5 TRAVEALMEGKPNPEVDNYLLFDPRAPKSGTAG--QFRGPFREAIVFMIGGGNYIECRSL 178 TR ++ LME K NPE D+Y FDP+ +S + + + PF+EAIVF++GGGNYIE ++L Sbjct: 545 TRILDNLMEMKSNPETDDYRYFDPKMLRSNDSSVPRNKSPFQEAIVFVVGGGNYIEYQNL 604 Query: 179 TELTQRSQTTKQVIYGATEILNGVEFIQQLSE 274 + + Q K ++YG +EI N +FI+QLS+ Sbjct: 605 VDYIKAKQ-GKHILYGCSEIFNATQFIKQLSQ 635
>SCFD1_RAT (Q62991) Sec1 family domain-containing protein 1 (Syntaxin-binding| protein 1-like 2) (Vesicle transport-related protein Ra410) (Sly1p) Length = 637 Score = 84.0 bits (206), Expect = 9e-17 Identities = 42/92 (45%), Positives = 63/92 (68%), Gaps = 2/92 (2%) Frame = +2 Query: 5 TRAVEALMEGKPNPEVDNYLLFDPRAPKSGTAG--QFRGPFREAIVFMIGGGNYIECRSL 178 TR ++ LME K NPE D+Y FDP+ +S + + + PF+EAIVF++GGGNYIE ++L Sbjct: 543 TRILDNLMEMKSNPETDDYRYFDPKMLRSNDSSVPRNKSPFQEAIVFVVGGGNYIEYQNL 602 Query: 179 TELTQRSQTTKQVIYGATEILNGVEFIQQLSE 274 + + Q K ++YG +EI N +FI+QLS+ Sbjct: 603 VDYIKGKQ-GKHILYGCSEIFNATQFIKQLSQ 633
>SCFD1_HUMAN (Q8WVM8) Sec1 family domain-containing protein 1 (Syntaxin-binding| protein 1-like 2) (Sly1p) Length = 641 Score = 81.6 bits (200), Expect = 5e-16 Identities = 40/92 (43%), Positives = 62/92 (67%), Gaps = 2/92 (2%) Frame = +2 Query: 5 TRAVEALMEGKPNPEVDNYLLFDPRAPKSGTAG--QFRGPFREAIVFMIGGGNYIECRSL 178 TR ++ LME K NPE D+Y FDP+ + + + + PF+EAIVF++GGGNYIE ++L Sbjct: 547 TRILDNLMEMKSNPETDDYRYFDPKMLRGNDSSVPRNKNPFQEAIVFVVGGGNYIEYQNL 606 Query: 179 TELTQRSQTTKQVIYGATEILNGVEFIQQLSE 274 + + Q K ++YG +E+ N +FI+QLS+ Sbjct: 607 VDYIKGKQ-GKHILYGCSELFNATQFIKQLSQ 637
>SLY1_DROME (Q24179) Sly1 protein homolog| Length = 657 Score = 79.0 bits (193), Expect = 3e-15 Identities = 38/93 (40%), Positives = 63/93 (67%), Gaps = 4/93 (4%) Frame = +2 Query: 5 TRAVEALMEGKPNPEVDNYLLFDPRAPKSGTA-GQFRGPFREAIVFMIGGGNYIECRSLT 181 T+ E +ME + N E D+YL DP+ K G + R PF++A+VFM+GGGNYIE ++L Sbjct: 552 TKITEQVMECRSNAETDDYLYLDPKLLKGGEVLPKNRAPFQDAVVFMVGGGNYIEYQNLV 611 Query: 182 ELTQRSQTT---KQVIYGATEILNGVEFIQQLS 271 + ++ QT+ +++IYGA+ + N +F+++LS Sbjct: 612 DFIKQKQTSNVQRRIIYGASTLTNARQFLKELS 644
>SLY1_DROVI (O18637) Sly1 protein homolog| Length = 656 Score = 74.3 bits (181), Expect = 7e-14 Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 4/93 (4%) Frame = +2 Query: 5 TRAVEALMEGKPNPEVDNYLLFDPRAPKSGTA-GQFRGPFREAIVFMIGGGNYIECRSLT 181 T+ E +ME + N E D+YL P+ K G + R PF++A+VFM+GGGNYIE ++L Sbjct: 552 TKITEQVMECRSNAETDDYLYLAPKLLKGGDVLPKNRAPFQDAVVFMVGGGNYIEYQNLV 611 Query: 182 ELTQRSQTT---KQVIYGATEILNGVEFIQQLS 271 + ++ QT+ +++IYG + + N +F+++LS Sbjct: 612 DFIKQKQTSNVHRRIIYGGSTLTNARQFLKELS 644
>SLY1_YEAST (P22213) Protein SLY1 (Suppressor of loss of YPT1 protein 1)| Length = 666 Score = 54.3 bits (129), Expect = 8e-08 Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 7/96 (7%) Frame = +2 Query: 5 TRAVEALME----GKPNPEV-DNYLLFDPRAPK-SGTAGQFRGPFREAIVFMIGGGNYIE 166 T V+A+M+ + N E D+YL DP+ + S T R + +++VF++GGGNY+E Sbjct: 559 TNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLE 618 Query: 167 CRSLTELT-QRSQTTKQVIYGATEILNGVEFIQQLS 271 ++L E + K+V+YG+T I EF+ ++S Sbjct: 619 YQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEIS 654
>VPS45_ARATH (O49048) Vacuolar protein-sorting protein 45 homolog (AtVPS45)| Length = 569 Score = 37.4 bits (85), Expect = 0.010 Identities = 19/55 (34%), Positives = 31/55 (56%) Frame = +2 Query: 110 RGPFREAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQQLSE 274 +G +E ++FM+GG Y E RS+ L + + + I G T +LN F++ L E Sbjct: 504 QGRPQEVVIFMVGGTTYEESRSVA-LQNATNSGVRFILGGTAVLNSKRFLKDLEE 557
>VP33A_HUMAN (Q96AX1) Vacuolar protein sorting 33A (hVPS33A)| Length = 596 Score = 35.4 bits (80), Expect = 0.038 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Frame = +2 Query: 8 RAVEALMEGKPNPEVDNYLLFDPRAPKSGTAGQFRGPF--REAIVFMIGGGNYIECRSLT 181 R++E ++ P P F+ R P + R P R ++F +GG + E +L Sbjct: 509 RSIEEVLRILPGPH------FEERQPLPTGLQKKRQPGENRVTLIFFLGGVTFAEIAALR 562 Query: 182 ELTQRSQTTKQVIYGATEILNGVEFIQQLSE 274 L+Q + + T+++NG +I+ L E Sbjct: 563 FLSQLEDGGTEYVIATTKLMNGTSWIEALME 593
>VP33A_RAT (Q63615) Vacuolar protein sorting 33A (r-vps33a)| Length = 597 Score = 34.7 bits (78), Expect = 0.065 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Frame = +2 Query: 8 RAVEALMEGKPNPEVDNYLLFDPRAPKSGTAGQFRGPF--REAIVFMIGGGNYIECRSLT 181 R++E ++ P P F+ R P + R P R +VF +GG + E +L Sbjct: 510 RSIEEVLRILPGPH------FEERQPLPTGVQKKRQPGENRVTLVFFLGGVTFAEIAALR 563 Query: 182 ELTQRSQTTKQVIYGATEILNGVEFIQQLSE 274 L+Q + + T+++NG +++ L E Sbjct: 564 FLSQLEDGGTEYVIATTKLINGSSWLEALME 594
>VP33A_MOUSE (Q9D2N9) Vacuolar protein sorting 33A| Length = 598 Score = 34.7 bits (78), Expect = 0.065 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Frame = +2 Query: 8 RAVEALMEGKPNPEVDNYLLFDPRAPKSGTAGQFRGPF--REAIVFMIGGGNYIECRSLT 181 R++E ++ P P F+ R P + R P R +VF +GG + E +L Sbjct: 511 RSIEEVLRILPGPH------FEERQPLPTGLQKKRQPGENRVTLVFFLGGVTFAEIAALR 564 Query: 182 ELTQRSQTTKQVIYGATEILNGVEFIQQLSE 274 L+Q + + T+++NG +I+ L E Sbjct: 565 FLSQLEDGGTEYVIATTKLMNGNSWIEALME 595
>SEC1A_ARATH (Q9C5P7) Protein transport Sec1a (AtSec1a)| Length = 611 Score = 32.0 bits (71), Expect = 0.42 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = +2 Query: 107 FRGPFREAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFI 259 F GPF VF+IGG E R +LT S ++V+ G+T + ++I Sbjct: 552 FFGPFERIFVFIIGGATRSELRVCHKLT--SSLRREVVLGSTSFDDPPQYI 600
>VPS33_ARATH (Q94KJ7) Vacuolar protein-sorting protein 33 homolog (AtVPS33)| Length = 592 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Frame = +2 Query: 8 RAVEALMEGKPNPEVDNYLLFDPRAPK-----SGTAGQFRGPFREAIVFMIGGGNYIECR 172 R +E +++ P P ++ P +P + G G +V IGG + E Sbjct: 496 RPMEDILKLLPGPHLETKRSGFPSSPSVDSLHGASNGVADGRRSIVLVVFIGGVTFAEIS 555 Query: 173 SLTELTQRSQTTKQVIYGATEILNGVEFIQQLSE 274 +L L + +I T+I+NG I+ E Sbjct: 556 ALRYLASKEGMAYDLIVATTKIVNGATLIETFME 589
>STXB3_HUMAN (O00186) Syntaxin-binding protein 3 (UNC-18 homolog 3) (UNC-18C)| (UNC-18-3) (Platelet Sec1 protein) (PSP) Length = 592 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/46 (34%), Positives = 27/46 (58%) Frame = +2 Query: 131 IVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQQL 268 IVF+IGG Y E R E++Q ++ +VI G+T +L + + + Sbjct: 532 IVFVIGGITYSEVRGAYEVSQAHKSC-EVIIGSTHVLTPKKLLDDI 576
>STXB3_MOUSE (Q60770) Syntaxin-binding protein 3 (UNC-18 homolog 3) (UNC-18C)| (MUNC-18-3) Length = 592 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +2 Query: 131 IVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEIL 241 I+F+IGG Y E R E++Q ++ +VI G+T IL Sbjct: 533 IIFVIGGITYSEMRCAYEVSQAHKSC-EVIIGSTHIL 568
>VPS45_RAT (O08700) Vacuolar protein sorting-associated protein 45 (rvps45)| Length = 570 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +2 Query: 122 REAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQQL 268 ++ IVF+IGG Y E ++ L R+ +++ G T I N F++++ Sbjct: 500 QDIIVFVIGGATYEEALTVYNL-NRTTPGVRIVLGGTTIHNTKSFLEEV 547
>VPS45_MOUSE (P97390) Vacuolar protein sorting-associated protein 45 (mVps45)| Length = 570 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +2 Query: 122 REAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQQL 268 ++ IVF+IGG Y E ++ L R+ +++ G T I N F++++ Sbjct: 500 QDIIVFIIGGATYEEALTVYNL-NRTTPGVRIVLGGTTIHNTKSFLEEV 547
>VPS45_HUMAN (Q9NRW7) Vacuolar protein sorting-associated protein 45 (h-VPS45)| (hlVps45) Length = 570 Score = 28.9 bits (63), Expect = 3.6 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +2 Query: 122 REAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQQL 268 ++ IVF+IGG Y E ++ L R+ +++ G T + N F++++ Sbjct: 500 QDIIVFVIGGATYEEALTVYNL-NRTTPGVRIVLGGTTVHNTKSFLEEV 547
>STXB1_RAT (P61765) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (rbSec1) (p67) Length = 594 Score = 28.5 bits (62), Expect = 4.7 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +2 Query: 86 KSGTAGQFR-GPFREAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQ 262 K+ G++R GP I+F++GG + E R E+TQ + +V+ G+T IL + + Sbjct: 524 KNKAPGEYRSGP--RLIIFILGGVSLNEMRCAYEVTQ-ANGKWEVLIGSTHILTPQKLLD 580 Query: 263 QLSE 274 L + Sbjct: 581 TLKK 584
>STXB1_MOUSE (O08599) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) Length = 594 Score = 28.5 bits (62), Expect = 4.7 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +2 Query: 86 KSGTAGQFR-GPFREAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQ 262 K+ G++R GP I+F++GG + E R E+TQ + +V+ G+T IL + + Sbjct: 524 KNKAPGEYRSGP--RLIIFILGGVSLNEMRCAYEVTQ-ANGKWEVLIGSTHILTPQKLLD 580 Query: 263 QLSE 274 L + Sbjct: 581 TLKK 584
>STXB1_HUMAN (P61764) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (p67) Length = 594 Score = 28.5 bits (62), Expect = 4.7 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +2 Query: 86 KSGTAGQFR-GPFREAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQ 262 K+ G++R GP I+F++GG + E R E+TQ + +V+ G+T IL + + Sbjct: 524 KNKAPGEYRSGP--RLIIFILGGVSLNEMRCAYEVTQ-ANGKWEVLIGSTHILTPQKLLD 580 Query: 263 QLSE 274 L + Sbjct: 581 TLKK 584
>STXB1_BOVIN (P61763) Syntaxin-binding protein 1 (Unc-18 homolog) (Unc-18A)| (Unc-18-1) (N-Sec1) (p67) Length = 594 Score = 28.5 bits (62), Expect = 4.7 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +2 Query: 86 KSGTAGQFR-GPFREAIVFMIGGGNYIECRSLTELTQRSQTTKQVIYGATEILNGVEFIQ 262 K+ G++R GP I+F++GG + E R E+TQ + +V+ G+T IL + + Sbjct: 524 KNKAPGEYRSGP--RLIIFILGGVSLNEMRCAYEVTQ-ANGKWEVLIGSTHILTPQKLLD 580 Query: 263 QLSE 274 L + Sbjct: 581 TLKK 584
>MFD_MYCTU (P64326) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1234 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +2 Query: 2 ATRAVEALMEGKPNPEVDNYLLFDPRAPKSGTAGQFRGPFREAIVFMIGGGNYI 163 A R VE L E + +L +APK G G +GP R+ ++ I G N + Sbjct: 438 AHRVVERLSES----DTPAGMLDPGQAPKPGVVGVLQGPLRDGVI--IPGANLV 485
>MFD_MYCBO (P64327) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1234 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/54 (33%), Positives = 26/54 (48%) Frame = +2 Query: 2 ATRAVEALMEGKPNPEVDNYLLFDPRAPKSGTAGQFRGPFREAIVFMIGGGNYI 163 A R VE L E + +L +APK G G +GP R+ ++ I G N + Sbjct: 438 AHRVVERLSES----DTPAGMLDPGQAPKPGVVGVLQGPLRDGVI--IPGANLV 485 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,243,737 Number of Sequences: 219361 Number of extensions: 654580 Number of successful extensions: 1685 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1675 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
