>CCD27_MOUSE (Q3V036) Coiled-coil domain-containing protein 27|
          Length = 639

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 193 DLPTFQGGGGKEEESHLMGLRKRLSSFSGKIQPISSASAEWAIRRTRSAPS 345
           DLP    G  K  E H +G     SS  G++ P S ++ E    R RS PS
Sbjct: 112 DLPRTCSGVWKLTEDHPLGRLGSASSVDGRVFPFSKSACELNYPRKRSEPS 162

>PDYN_CAVPO (Q60478) Beta-neoendorphin-dynorphin precursor (Proenkephalin B)|
           (Preprodynorphin) [Contains: Beta-neoendorphin;
           Dynorphin A; Leu-enkephalin; Rimorphin; Dynorphin B]
          Length = 245

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 142 LENIQKARFLPTRPLRDDLPTFQGGGGKEEESHLMG 249
           L+ ++K+RFLP+ P  D      GG G+   S  MG
Sbjct: 102 LQELEKSRFLPSTPAEDKFRGLLGGLGEGLGSEAMG 137

>YNU1_SHIFL (P29770) Hypothetical 23.2 kDa protein in nuc 5'region|
          Length = 209

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 241 LMGLRKRLSSFSGKIQPISSASAEWAIRRTRSAPS 345
           L  +RK+L S  G    IS A AEW  R+T + PS
Sbjct: 24  LAAVRKKLGS--GSFTTISDAMAEWKNRKTATLPS 56

>RPOA_CHLVU (P56298) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase alpha subunit) (RNA
           polymerase alpha subunit)
          Length = 278

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 88  APHHLFFLPSRLVAMATILENIQKARFLPTRPLRDDLPTFQGGG 219
           A H    LP     +  IL N++K  F+P  P      TFQG G
Sbjct: 64  ATHEFAVLPDVEETVLEILLNLKKTVFVPRIPKNQKFETFQGFG 107

>CRSP7_HUMAN (O95402) CRSP complex subunit 7 (Cofactor required for Sp1|
           transcriptional activation subunit 7) (Transcriptional
           coactivator CRSP70) (Activator-recruited cofactor 70 kDa
           component) (ARC70)
          Length = 600

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 395 PQSHQRLSGPAANSAASDGAERVRRIAHSADAEE 294
           P+SHQRL+GP   +  S     + R   S D+ +
Sbjct: 345 PESHQRLAGPGCKAGLSPAEPLLSRAGFSPDSSK 378

>ADA32_MOUSE (Q8K410) ADAM 32 precursor (A disintegrin and metalloprotease|
           domain 32)
          Length = 750

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = -3

Query: 170 RNLAFWMFSRMVAMATKREGRKKRWCGASYQWPPLLSSSDLVGALWRGEEGVGEEE 3
           R+ + W     + M    + ++K+W  + Y    +L+S  L+G  W+G +  G +E
Sbjct: 662 RSASLWSGKHDLPMERASKNQEKKWLLSLYIVLIILASVFLIGTGWKGLKQCGSKE 717

>Y4GI_RHISN (P55465) Hypothetical protein y4gI|
          Length = 909

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +1

Query: 181 PLRDDLPTFQGGGGKEEESHLMGLRKRLSSFSGKIQPISSASAEWAIRRTRSAPSLA 351
           P+RDDL T  G G    E+ + G  K+  + +G++  +        +RR ++ P ++
Sbjct: 321 PMRDDLQTLSGQGFMTYEAVVRGWGKQRQALAGRLSEL--------VRRLQNGPLIS 369

>CINA_SYMTH (Q67NW5) CinA-like protein|
          Length = 426

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 226 EEESHLMGLRKRLSSFSGKI-QPISSASAEWAIRRTRSAPSLAAEFAAGP 372
           E +  L+G+ + L S  G + +P++ A AE A++R+ +  ++A    AGP
Sbjct: 311 EAKVSLLGVPEELLSAHGAVSEPVARAMAEGALQRSGADVAVAVSGIAGP 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,699,554
Number of Sequences: 219361
Number of extensions: 700895
Number of successful extensions: 2868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2868
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)