ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet03h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-relate... 29 4.1
2PUM_DROME (P25822) Maternal protein pumilio 29 4.1
3CHHB2_BOMMO (P20730) Chorion class high-cysteine HCB protein 13 ... 29 4.1
4CHHB1_BOMMO (P05688) Chorion class high-cysteine HCB protein 12 ... 29 4.1
5BCHE_RHOS4 (Q9RFD3) Anaerobic magnesium-protoporphyrin IX monome... 29 5.4
6VNUA_PRVKA (P33485) Probable nuclear antigen 28 7.1
7KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-ass... 28 9.2

>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible|
           leucine zipper protein 4)
          Length = 780

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 153 AKPGEHLGLGPLGQRLPEANLVLAQ 79
           A+P +  G GP GQ LP  N+ LAQ
Sbjct: 309 AQPSQPQGAGPGGQTLPPTNVTLAQ 333



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>PUM_DROME (P25822) Maternal protein pumilio|
          Length = 1533

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 348 GPGGKGVCQAGHSGGRGCCGCLHHQ 422
           G GG G    G++GG G  G LHHQ
Sbjct: 154 GGGGGGGAGGGNNGGSGTNGGLHHQ 178



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>CHHB2_BOMMO (P20730) Chorion class high-cysteine HCB protein 13 precursor|
           (HC-B.13)
          Length = 178

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 348 GPGGKGVCQAGHSGGRGCCG 407
           G GG G C  G  GG GCCG
Sbjct: 125 GCGGCGGCGCGGCGGCGCCG 144



 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +3

Query: 348 GPGGKGVCQAGHSGGRGCCGC 410
           G GG G C  G  GG GC GC
Sbjct: 117 GCGGCGGCGCGGCGGCGCGGC 137



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>CHHB1_BOMMO (P05688) Chorion class high-cysteine HCB protein 12 precursor|
           (HC-B.12)
          Length = 131

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 239 TRRLGGCAAGSDGSICGCAG 180
           TR  GGC  G  G  CGC G
Sbjct: 108 TRSCGGCGCGCGGCGCGCGG 127



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>BCHE_RHOS4 (Q9RFD3) Anaerobic magnesium-protoporphyrin IX monomethyl ester|
           [oxidative] cyclase (EC 1.14.13.-) (Anaerobic
           Mg-protoporphyrin IX monomethyl ester oxidative cyclase)
          Length = 612

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 227 GGCAAGSDGSICGCAG 180
           GGC   +DGS CGC G
Sbjct: 545 GGCGGHADGSDCGCGG 560



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>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 330  RAVPRQGPGGKGVCQAGHSGGRGCCGC 410
            R  PR GP  +G   AG +GG G  GC
Sbjct: 1639 RVPPRGGPSPRGCRGAGRAGGGGRGGC 1665



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>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +3

Query: 354 GGKGVC--QAGHSGGRGCCGC 410
           G KGVC  + G  GG G CGC
Sbjct: 106 GSKGVCGFRGGSKGGCGSCGC 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,158,347
Number of Sequences: 219361
Number of extensions: 430110
Number of successful extensions: 2027
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2022
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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