ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet03f06 |
|---|---|
| Clone Library Name | barley_pub |
>VGLI_HCMVA (P16778) Immediate early glycoprotein precursor| Length = 487 Score = 31.6 bits (70), Expect = 0.91 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 264 HWLTVDICTSCGGNMALLSIGCI 332 HW + ICT G++ALLS+ CI Sbjct: 432 HWALLSICTVAAGSIALLSLFCI 454
>ESR1_ORYLA (P50241) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 620 Score = 30.4 bits (67), Expect = 2.0 Identities = 30/87 (34%), Positives = 35/87 (40%) Frame = +3 Query: 99 SRMLLSRPNQEVIPVPMDQMIVSFQAFMMIWLKTALPGQADQTTLHSLV*TRNSVHWLTV 278 SR LSRP EV + + + + MI LPG Q +LH V S WL V Sbjct: 333 SRQKLSRPYTEVTMMTLLTSMADKELVHMIAWAKKLPGFL-QLSLHDQVLLLES-SWLEV 390 Query: 279 DICTSCGGNMALLSIGCIWPVA*CPGK 359 L IG IW CPGK Sbjct: 391 ------------LMIGLIWRSIHCPGK 405
>ESR1_MICUN (P57753) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| (Fragment) Length = 525 Score = 30.4 bits (67), Expect = 2.0 Identities = 30/87 (34%), Positives = 35/87 (40%) Frame = +3 Query: 99 SRMLLSRPNQEVIPVPMDQMIVSFQAFMMIWLKTALPGQADQTTLHSLV*TRNSVHWLTV 278 SR LSRP EV + + + + MI LPG Q +LH V S WL V Sbjct: 228 SRQKLSRPYTEVTMMTLLTSMADKELVHMIAWAKKLPGFL-QLSLHDQVQLLES-SWLEV 285 Query: 279 DICTSCGGNMALLSIGCIWPVA*CPGK 359 L IG IW CPGK Sbjct: 286 ------------LMIGLIWRSIHCPGK 300
>COX2_PIG (P50667) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 228 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>COX2_SYNCA (P50675) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>COX2_CERUN (Q37440) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>COX2_BUBDE (P50678) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>COX2_BOSJA (P68294) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>COX2_BOSGA (P68295) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>COX2_BISBO (P68296) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>COX2_BISBI (Q37416) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 30.0 bits (66), Expect = 2.7 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>MOAA_STRCO (Q9RJ47) Molybdenum cofactor biosynthesis protein A| Length = 341 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 167 LPGLHDDLAQDCLAWTSRSDY 229 +PGL+DD A D LAW DY Sbjct: 175 MPGLNDDEAPDLLAWAVEHDY 195
>ESR1_OREAU (P50240) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 583 Score = 29.6 bits (65), Expect = 3.5 Identities = 29/87 (33%), Positives = 35/87 (40%) Frame = +3 Query: 99 SRMLLSRPNQEVIPVPMDQMIVSFQAFMMIWLKTALPGQADQTTLHSLV*TRNSVHWLTV 278 SR +SRP EV + + + + MI LPG Q +LH V S WL V Sbjct: 284 SRQKMSRPYTEVTIMTLLTSMADKELVHMITWAKKLPGFL-QLSLHDQVLLLES-SWLEV 341 Query: 279 DICTSCGGNMALLSIGCIWPVA*CPGK 359 L IG IW CPGK Sbjct: 342 ------------LMIGLIWRSIQCPGK 356
>ESR1_ORENI (Q9YH33) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 585 Score = 29.6 bits (65), Expect = 3.5 Identities = 29/87 (33%), Positives = 35/87 (40%) Frame = +3 Query: 99 SRMLLSRPNQEVIPVPMDQMIVSFQAFMMIWLKTALPGQADQTTLHSLV*TRNSVHWLTV 278 SR +SRP EV + + + + MI LPG Q +LH V S WL V Sbjct: 285 SRQKMSRPYTEVTIMTLLTSMADKELVHMITWAKKLPGFL-QLSLHDQVLLLES-SWLEV 342 Query: 279 DICTSCGGNMALLSIGCIWPVA*CPGK 359 L IG IW CPGK Sbjct: 343 ------------LMIGLIWRSIQCPGK 357
>COX2_MACCA (Q37548) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 29.6 bits (65), Expect = 3.5 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 8/53 (15%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSL 242 LL N+ V+PV M +M++S + + W LKT A+PG+ +QTTL S+ Sbjct: 135 LLEVDNRVVLPVEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLLSI 187
>COX2_BOSTR (Q37419) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 29.6 bits (65), Expect = 3.5 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M++S + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLISSEDVLHSWTVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 ++ C+ CG N + + I Sbjct: 192 YY---GQCSEICGSNHSFMPI 209
>ESR1_PAGMA (O42132) Estrogen receptor (ER) (Estradiol receptor) (ER-alpha)| Length = 581 Score = 29.3 bits (64), Expect = 4.5 Identities = 29/87 (33%), Positives = 35/87 (40%) Frame = +3 Query: 99 SRMLLSRPNQEVIPVPMDQMIVSFQAFMMIWLKTALPGQADQTTLHSLV*TRNSVHWLTV 278 SR L+RP EV + + + + MI LPG Q +LH V S WL V Sbjct: 291 SRQKLNRPYTEVTMMTLLTSMADKELVHMIAWAKKLPGFL-QLSLHDQVQLLES-SWLEV 348 Query: 279 DICTSCGGNMALLSIGCIWPVA*CPGK 359 L IG IW CPGK Sbjct: 349 ------------LMIGLIWRSIHCPGK 363
>UVRC_METMA (Q8PRZ8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 523 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +3 Query: 120 PNQEVIPVPMDQMIVSFQAFMM-IWLKTALPGQADQTTLHSLV 245 P + ++P P+D+ +V F A + +K A+P Q D+ L LV Sbjct: 299 PEELIVPEPLDESLVEFLAHVKGKKVKVAVPKQGDKKELLDLV 341
>COX2_BALPH (P24986) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.9 bits (63), Expect = 5.9 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 + C+ CG N + + I Sbjct: 192 FY---GQCSEICGSNHSFMPI 209
>COX2_BALMU (P41294) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.9 bits (63), Expect = 5.9 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 + C+ CG N + + I Sbjct: 192 FY---GQCSEICGSNHSFMPI 209
>PYRB_SERMA (P19910) Aspartate carbamoyltransferase catalytic chain (EC| 2.1.3.2) (Aspartate transcarbamylase) (ATCase) Length = 305 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = -3 Query: 408 MASLGASSIGFRDGSNASQG 349 M LGAS +GF DGSN S G Sbjct: 63 MHRLGASVVGFADGSNTSLG 82
>COX2_SHEEP (O78750) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.5 bits (62), Expect = 7.7 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M++S + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTVRMLISSEDVLPSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 + C+ CG N + + I Sbjct: 192 FY---GQCSEICGSNHSFMPI 209
>COX2_CAPHI (Q37430) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.5 bits (62), Expect = 7.7 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHSLV*TRNSV 263 LL N+ V+P+ M +M++S + + W LKT A+PG+ +QTTL S TR + Sbjct: 135 LLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS---TRPGL 191 Query: 264 HWLTVDICTS-CGGNMALLSI 323 + C+ CG N + + I Sbjct: 192 FY---GQCSEICGSNHSFMPI 209
>COX2_BOVIN (P68530) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 8/52 (15%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHS 239 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS 186
>COX2_BOSMU (P68554) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 8/52 (15%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHS 239 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS 186
>COX2_BOSIN (P68553) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 227 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 8/52 (15%) Frame = +3 Query: 108 LLSRPNQEVIPVPMD-QMIVSFQAFMMIW------LKT-ALPGQADQTTLHS 239 LL N+ V+P+ M +M+VS + + W LKT A+PG+ +QTTL S Sbjct: 135 LLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMS 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,176,726 Number of Sequences: 219361 Number of extensions: 1273905 Number of successful extensions: 3496 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3495 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
