ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet03f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 57 1e-08
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 53 2e-07
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 40 0.002
4EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 34 0.11
5LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglyc... 29 2.7
6IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2 29 3.5
7AROE_NEIMU (P95389) Shikimate dehydrogenase (EC 1.1.1.25) 28 4.5
8SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB s... 28 7.7
9HIS8_METAC (Q8TUE9) Histidinol-phosphate aminotransferase (EC 2.... 28 7.7

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = +1

Query: 85  RLVNAVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLP-GRPTGRFTNGYNLADVISQRL 261
           + + AV+ FGDS+ D GNN+ L        RPYGMD P G  TGRF+NG   +D IS+ L
Sbjct: 121 KTIPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYL 180

Query: 262 G 264
           G
Sbjct: 181 G 181



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +1

Query: 85  RLVNAVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLPGR-PTGRFTNGYNLADVISQRL 261
           + + AV+ FGDS+ D GNN+ L        RPYGMD   R  TGRF+NG   +D +++ +
Sbjct: 200 KTIPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYM 259

Query: 262 GFEMSPKPYL 291
           G +     YL
Sbjct: 260 GVKEIVPAYL 269



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 25/66 (37%), Positives = 34/66 (51%)
 Frame = +1

Query: 97  AVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMS 276
           A++ FGDS  D G    L A   +A  P+G    G P GR+ +G  + D I++ LG    
Sbjct: 30  AIFNFGDSNSDTGG---LSAAFGQAGPPHGSSFFGSPAGRYCDGRLVIDFIAESLGL--- 83

Query: 277 PKPYLS 294
             PYLS
Sbjct: 84  --PYLS 87



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +1

Query: 97  AVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMS 276
           A++ FGDS  D G       P    N PYG     R TGR+++G  + D I++       
Sbjct: 34  AIFNFGDSNSDTGGKAAAFYPL---NPPYGETFFHRSTGRYSDGRLIIDFIAESFNL--- 87

Query: 277 PKPYLS 294
             PYLS
Sbjct: 88  --PYLS 91



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>LIP1_PHOLU (P40601) Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase)|
          Length = 645

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +1

Query: 94  NAVYVFGDSLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNG-----YNLADVISQR 258
           N +YVFGDSL D GNN                   GR T    NG     YN  D I+Q+
Sbjct: 26  NNLYVFGDSLSDGGNN-------------------GRYTVDGINGTESKLYN--DFIAQQ 64

Query: 259 LGFEM 273
           LG E+
Sbjct: 65  LGIEL 69



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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 130 VGNNDYLPAPAPRANRPYGMDLPGRP 207
           VGNN Y   PAP   RP     PG P
Sbjct: 178 VGNNPYSSQPAPERERPAARPGPGGP 203



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>AROE_NEIMU (P95389) Shikimate dehydrogenase (EC 1.1.1.25)|
          Length = 269

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 199 GRPTGRFTNGYNLADVISQRLGFEMSPKPYL 291
           G+  G  T+G  L D IS+RLG E+S K  L
Sbjct: 97  GKIRGDNTDGIGLTDDISKRLGVELSGKTVL 127



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>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB|
            sensitivity-inducing factor large subunit) (DSIF large
            subunit) (Protein foggy)
          Length = 1084

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 145  YLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMSPKP 285
            Y   P+P+ N  Y    PG P    T+ Y+     S +  ++ SP P
Sbjct: 860  YPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQPSPSP 906



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>HIS8_METAC (Q8TUE9) Histidinol-phosphate aminotransferase (EC 2.6.1.9)|
           (Imidazole acetol-phosphate transaminase)
          Length = 367

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +1

Query: 118 SLVDVGNNDYLPAPAPRANRPYGMDLPGRPTGRFTNGYNLADVISQRLGFEMS 276
           S++ +G+N+    P+P+A R      PG       +   L +V+S+  GF +S
Sbjct: 39  SIIKLGSNENPLGPSPKAVRALVETAPGANIYPSADARELREVLSKYTGFPVS 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,089,729
Number of Sequences: 219361
Number of extensions: 366861
Number of successful extensions: 1092
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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