ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet03f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_472622.1| Oryza sativa (japonica cultivar-group), predic... 42 1.1
2ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfami... 42 1.1
3gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromoso... 42 1.1
4gb|AC005020.5| Homo sapiens BAC clone GS1-259H13 from 7, complet... 42 1.1
5emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
6gb|AE012465.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.1
7gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.1
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
9emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
10dbj|AK064785.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
11ref|XM_468492.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.3
12gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
13ref|XM_500497.1| Yarrowia lipolytica CLIB122, YALI0B04488g predi... 40 4.3
14gb|AC015961.16| Homo sapiens chromosome 18, clone RP11-95O2, com... 40 4.3
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
17gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, c... 40 4.3
18dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
19dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 4.3
20gb|AC008372.6|AC008372 Homo sapiens chromosome 14 clones RP11-11... 40 4.3
21gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 4.3
22emb|AL731829.10| Mouse DNA sequence from clone RP23-383P24 on ch... 40 4.3
23emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 40 4.3
24emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chr... 40 4.3

>ref|XM_472622.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1836

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 273 tcctctccgactcctacttgggctgcttc 301
           ||||||||||||||||| | |||||||||
Sbjct: 272 tcctctccgactcctacctcggctgcttc 300



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>ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfamily A (CYP3A) on chromosome
              7
          Length = 428605

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      cagaagcagagatggagagct 26
              |||||||||||||||||||||
Sbjct: 333200 cagaagcagagatggagagct 333220



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>gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromosome 7, complete
             sequence
          Length = 199758

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     cagaagcagagatggagagct 26
             |||||||||||||||||||||
Sbjct: 98999 cagaagcagagatggagagct 99019



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>gb|AC005020.5| Homo sapiens BAC clone GS1-259H13 from 7, complete sequence
          Length = 177531

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     cagaagcagagatggagagct 26
             |||||||||||||||||||||
Sbjct: 95926 cagaagcagagatggagagct 95946



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>emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0076O17, complete
             sequence
          Length = 121130

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 273   tcctctccgactcctacttgggctgcttc 301
             ||||||||||||||||| | |||||||||
Sbjct: 49427 tcctctccgactcctacctcggctgcttc 49399



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>gb|AE012465.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 373
            of 460 of the complete genome
          Length = 12933

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 204  gcatcgacgcggcgcagatcg 224
            |||||||||||||||||||||
Sbjct: 2339 gcatcgacgcggcgcagatcg 2319



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 204    gcatcgacgcggcgcagatcg 224
              |||||||||||||||||||||
Sbjct: 848691 gcatcgacgcggcgcagatcg 848711



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 273      tcctctccgactcctacttgggctgcttc 301
                ||||||||||||||||| | |||||||||
Sbjct: 21983505 tcctctccgactcctacctcggctgcttc 21983477



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>emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064D20,
             complete sequence
          Length = 99855

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 273   tcctctccgactcctacttgggctgcttc 301
             ||||||||||||||||| | |||||||||
Sbjct: 56076 tcctctccgactcctacctcggctgcttc 56048



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>dbj|AK064785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B16, full
           insert sequence
          Length = 2110

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 273 tcctctccgactcctacttgggctgcttc 301
           ||||||||||||||||| | |||||||||
Sbjct: 381 tcctctccgactcctacctcggctgcttc 409



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>ref|XM_468492.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1195

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 5  gcagaagcagagatggagag 24
          ||||||||||||||||||||
Sbjct: 1  gcagaagcagagatggagag 20



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>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E01,
              complete sequence
          Length = 180426

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                          
Query: 260    gtcgccggagccatcctctccgactcctacttgggctgcttccc 303
              |||||||| |||||| || ||||| ||| ||| |||||||||||
Sbjct: 123298 gtcgccggcgccatcgtcgccgacgccttcttcggctgcttccc 123341



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>ref|XM_500497.1| Yarrowia lipolytica CLIB122, YALI0B04488g predicted mRNA
          Length = 4104

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   gaccaagaagggcaagcgaa 72
            ||||||||||||||||||||
Sbjct: 3699 gaccaagaagggcaagcgaa 3718



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>gb|AC015961.16| Homo sapiens chromosome 18, clone RP11-95O2, complete sequence
          Length = 163808

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      ggcagaagcagagatggaga 23
              ||||||||||||||||||||
Sbjct: 148119 ggcagaagcagagatggaga 148138



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                            
Query: 260      gtcgccggagccatcctctccgactcctacttgggctgcttccc 303
                |||||||| |||||| || ||||| ||| ||| |||||||||||
Sbjct: 15731194 gtcgccggcgccatcgtcgccgacgccttcttcggctgcttccc 15731237



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        gcagaagcagagatggagag 24
                ||||||||||||||||||||
Sbjct: 35525692 gcagaagcagagatggagag 35525711



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>gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, complete sequence
          Length = 185563

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ggcagaagcagagatggaga 23
              ||||||||||||||||||||
Sbjct: 167516 ggcagaagcagagatggaga 167497



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>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0452F04
          Length = 171421

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     gcagaagcagagatggagag 24
             ||||||||||||||||||||
Sbjct: 42084 gcagaagcagagatggagag 42103



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     acatcgtccgcggctcgctc 247
               ||||||||||||||||||||
Sbjct: 8174868 acatcgtccgcggctcgctc 8174849



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 211     cgcggcgcagatcgccaacatcgtccgc 238
               |||||||||| ||| |||||||||||||
Sbjct: 8023281 cgcggcgcagctcgacaacatcgtccgc 8023308



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>gb|AC008372.6|AC008372 Homo sapiens chromosome 14 clones RP11-111O16 and RP11-61F4 containing
              genes for nuclear receptor coactivator NCoA-62 (nuclear
              receptor coactivator NCoA-62) gene, complete cds; and
              unknown gene, complete sequence
          Length = 268238

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     aggatggatcacccttccct 110
              ||||||||||||||||||||
Sbjct: 193007 aggatggatcacccttccct 193026



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     cgtggacagcatcgacgcgg 215
               ||||||||||||||||||||
Sbjct: 4057094 cgtggacagcatcgacgcgg 4057113



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>emb|AL731829.10| Mouse DNA sequence from clone RP23-383P24 on chromosome 4 Contains part
              of the Astn2 gene for astrotactin 2 and a CpG island,
              complete sequence
          Length = 199452

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    gactcctacttgggctgctt 300
              ||||||||||||||||||||
Sbjct: 107706 gactcctacttgggctgctt 107687



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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 53     gaccaagaagggcaagcgaa 72
              ||||||||||||||||||||
Sbjct: 603522 gaccaagaagggcaagcgaa 603541



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>emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chromosome X, complete
              sequence
          Length = 175639

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     agaagggcaagcgaagggag 77
              ||||||||||||||||||||
Sbjct: 146998 agaagggcaagcgaagggag 146979


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,473,971
Number of Sequences: 3902068
Number of extensions: 2473971
Number of successful extensions: 49123
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48884
Number of HSP's gapped (non-prelim): 239
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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