| Clone Name | baet03f04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472622.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1836 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 273 tcctctccgactcctacttgggctgcttc 301 ||||||||||||||||| | ||||||||| Sbjct: 272 tcctctccgactcctacctcggctgcttc 300
>ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfamily A (CYP3A) on chromosome 7 Length = 428605 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 cagaagcagagatggagagct 26 ||||||||||||||||||||| Sbjct: 333200 cagaagcagagatggagagct 333220
>gb|AC145881.4| Pan troglodytes BAC clone RP43-7E18 from chromosome 7, complete sequence Length = 199758 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 cagaagcagagatggagagct 26 ||||||||||||||||||||| Sbjct: 98999 cagaagcagagatggagagct 99019
>gb|AC005020.5| Homo sapiens BAC clone GS1-259H13 from 7, complete sequence Length = 177531 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 cagaagcagagatggagagct 26 ||||||||||||||||||||| Sbjct: 95926 cagaagcagagatggagagct 95946
>emb|BX548156.1|OSJN00292 Oryza sativa genomic DNA, chromosome 4, BAC clone: P0076O17, complete sequence Length = 121130 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 273 tcctctccgactcctacttgggctgcttc 301 ||||||||||||||||| | ||||||||| Sbjct: 49427 tcctctccgactcctacctcggctgcttc 49399
>gb|AE012465.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 373 of 460 of the complete genome Length = 12933 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 gcatcgacgcggcgcagatcg 224 ||||||||||||||||||||| Sbjct: 2339 gcatcgacgcggcgcagatcg 2319
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 gcatcgacgcggcgcagatcg 224 ||||||||||||||||||||| Sbjct: 848691 gcatcgacgcggcgcagatcg 848711
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 273 tcctctccgactcctacttgggctgcttc 301 ||||||||||||||||| | ||||||||| Sbjct: 21983505 tcctctccgactcctacctcggctgcttc 21983477
>emb|AL662973.3|OSJN00175 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064D20, complete sequence Length = 99855 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 273 tcctctccgactcctacttgggctgcttc 301 ||||||||||||||||| | ||||||||| Sbjct: 56076 tcctctccgactcctacctcggctgcttc 56048
>dbj|AK064785.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B16, full insert sequence Length = 2110 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 273 tcctctccgactcctacttgggctgcttc 301 ||||||||||||||||| | ||||||||| Sbjct: 381 tcctctccgactcctacctcggctgcttc 409
>ref|XM_468492.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1195 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcagaagcagagatggagag 24 |||||||||||||||||||| Sbjct: 1 gcagaagcagagatggagag 20
>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E01, complete sequence Length = 180426 Score = 40.1 bits (20), Expect = 4.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 260 gtcgccggagccatcctctccgactcctacttgggctgcttccc 303 |||||||| |||||| || ||||| ||| ||| ||||||||||| Sbjct: 123298 gtcgccggcgccatcgtcgccgacgccttcttcggctgcttccc 123341
>ref|XM_500497.1| Yarrowia lipolytica CLIB122, YALI0B04488g predicted mRNA Length = 4104 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gaccaagaagggcaagcgaa 72 |||||||||||||||||||| Sbjct: 3699 gaccaagaagggcaagcgaa 3718
>gb|AC015961.16| Homo sapiens chromosome 18, clone RP11-95O2, complete sequence Length = 163808 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ggcagaagcagagatggaga 23 |||||||||||||||||||| Sbjct: 148119 ggcagaagcagagatggaga 148138
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.3 Identities = 38/44 (86%) Strand = Plus / Plus Query: 260 gtcgccggagccatcctctccgactcctacttgggctgcttccc 303 |||||||| |||||| || ||||| ||| ||| ||||||||||| Sbjct: 15731194 gtcgccggcgccatcgtcgccgacgccttcttcggctgcttccc 15731237
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcagaagcagagatggagag 24 |||||||||||||||||||| Sbjct: 35525692 gcagaagcagagatggagag 35525711
>gb|AC090386.13| Homo sapiens chromosome 18, clone RP11-797E24, complete sequence Length = 185563 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ggcagaagcagagatggaga 23 |||||||||||||||||||| Sbjct: 167516 ggcagaagcagagatggaga 167497
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 gcagaagcagagatggagag 24 |||||||||||||||||||| Sbjct: 42084 gcagaagcagagatggagag 42103
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 acatcgtccgcggctcgctc 247 |||||||||||||||||||| Sbjct: 8174868 acatcgtccgcggctcgctc 8174849 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 211 cgcggcgcagatcgccaacatcgtccgc 238 |||||||||| ||| ||||||||||||| Sbjct: 8023281 cgcggcgcagctcgacaacatcgtccgc 8023308
>gb|AC008372.6|AC008372 Homo sapiens chromosome 14 clones RP11-111O16 and RP11-61F4 containing genes for nuclear receptor coactivator NCoA-62 (nuclear receptor coactivator NCoA-62) gene, complete cds; and unknown gene, complete sequence Length = 268238 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 aggatggatcacccttccct 110 |||||||||||||||||||| Sbjct: 193007 aggatggatcacccttccct 193026
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 cgtggacagcatcgacgcgg 215 |||||||||||||||||||| Sbjct: 4057094 cgtggacagcatcgacgcgg 4057113
>emb|AL731829.10| Mouse DNA sequence from clone RP23-383P24 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and a CpG island, complete sequence Length = 199452 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gactcctacttgggctgctt 300 |||||||||||||||||||| Sbjct: 107706 gactcctacttgggctgctt 107687
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 gaccaagaagggcaagcgaa 72 |||||||||||||||||||| Sbjct: 603522 gaccaagaagggcaagcgaa 603541
>emb|AL662931.10| Mouse DNA sequence from clone RP23-24M17 on chromosome X, complete sequence Length = 175639 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 agaagggcaagcgaagggag 77 |||||||||||||||||||| Sbjct: 146998 agaagggcaagcgaagggag 146979 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,473,971 Number of Sequences: 3902068 Number of extensions: 2473971 Number of successful extensions: 49123 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48884 Number of HSP's gapped (non-prelim): 239 length of query: 327 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 305 effective length of database: 17,147,199,772 effective search space: 5229895930460 effective search space used: 5229895930460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)