Clone Information

BLAST Search Result

Clone Name	baet03d08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_480056.1\| Oryza sativa (japonica cultivar-group), mRNA	121	2e-24
2	dbj\|AK073681.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	121	2e-24
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	113	4e-22
4	dbj\|AP004381.3\| Oryza sativa (japonica cultivar-group) genomic D...	113	4e-22
5	ref\|XM_367246.1\| Magnaporthe grisea 70-15 hypothetical protein (...	44	0.28
6	emb\|BX832663.1\|CNS0A13X Arabidopsis thaliana Full-length cDNA Co...	44	0.28
7	ref\|XM_482406.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.1
8	ref\|XM_507232.1\| PREDICTED Oryza sativa (japonica cultivar-group...	42	1.1
9	ref\|XM_426187.1\| PREDICTED: Gallus gallus similar to PR domain c...	42	1.1
10	gb\|AC124041.3\| Oryctolagus cuniculus clone LB1-44O5, complete se...	42	1.1
11	emb\|BX927150.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	42	1.1
12	emb\|BX572094.1\| Prochlorococcus marinus MED4 complete genome; se...	42	1.1
13	gb\|AC092919.5\| Homo sapiens 3q BAC RP11-185E8 (Roswell Park Canc...	42	1.1
14	gb\|DP000006.1\| Oryctolagus cuniculus target 1 genomic scaffold	42	1.1
15	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	42	1.1
16	dbj\|AP004667.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.1
17	gb\|AF145729.1\|AF145729 Oryza sativa homeodomain leucine zipper p...	42	1.1
18	dbj\|AK110561.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.1
19	dbj\|AK101569.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.1
20	dbj\|AK100634.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.1
21	gb\|AY739096.1\| Takifugu rubripes frRHCE, frSMP1, frNPD014, and f...	40	4.4
22	ref\|NM_187881.1\| Oryza sativa (japonica cultivar-group), Ozsa832...	40	4.4
23	ref\|XM_512183.1\| PREDICTED: Pan troglodytes similar to Potential...	40	4.4
24	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	4.4
25	gb\|AE008947.1\| Agrobacterium tumefaciens str. C58 AT plasmid sec...	40	4.4
26	gb\|AE007894.1\| Agrobacterium tumefaciens str. C58 plasmid AT, se...	40	4.4
27	gb\|CP000115.1\| Nitrobacter winogradskyi Nb-255, complete genome	40	4.4
28	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	40	4.4
29	gb\|AC130467.2\| Homo sapiens chromosome 16 clone CTD-2015G9, comp...	40	4.4
30	ref\|XM_720556.1\| Plasmodium yoelii yoelii str. 17XNL hypothetica...	40	4.4
31	gb\|AY305378.1\| Ralstonia eutropha H16 megaplasmid pHG1, complete...	40	4.4
32	gb\|BC003353.1\| Homo sapiens mediator of RNA polymerase II transc...	40	4.4
33	ref\|NM_032286.2\| Homo sapiens mediator of RNA polymerase II tran...	40	4.4
34	emb\|CR555306.1\| Azoarcus sp. EbN1 complete genome	40	4.4
35	emb\|AL939124.1\|SCO939124 Streptomyces coelicolor A3(2) complete ...	40	4.4
36	gb\|AF056246.2\| Xanthomonas campestris pv. vesicatoria hrp gene c...	40	4.4
37	gb\|AC183495.1\| Brassica oleracea Contig A, complete sequence	40	4.4
38	gb\|CP000254.1\| Methanospirillum hungatei JF-1, complete genome	40	4.4
39	gb\|AE016820.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	4.4
40	gb\|AC093307.5\| Homo sapiens chromosome 5 clone RP11-810C16, comp...	40	4.4
41	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
42	gb\|AC009154.5\| Homo sapiens chromosome 16 clone RP11-58A18, comp...	40	4.4
43	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	4.4
44	gb\|AF269644.1\|AF269644 Staphylococcus epidermidis strain SR1 clo...	40	4.4
45	dbj\|AP000492.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	4.4
46	gb\|AC023090.12\| Homo sapiens chromosome 18, clone RP11-800A18, c...	40	4.4
47	gb\|AY453397.1\| Homo sapiens transformation-related protein 20 (T...	40	4.4
48	gb\|CP000029.1\| Staphylococcus epidermidis RP62A, complete genome	40	4.4
49	emb\|Z23660.1\|HS218YB10 H. sapiens (D16S498) DNA segment containi...	40	4.4
50	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	40	4.4
51	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	4.4
52	gb\|AF158699.1\|AF158699 Burkholderia cepacia D-serine deaminase (...	40	4.4
53	gb\|AE015929.1\| Staphylococcus epidermidis ATCC 12228, complete g...	40	4.4
54	gb\|AC005793.1\|AC005793 Homo sapiens chromosome 19, cosmid F23522...	40	4.4
55	emb\|AL808011.11\| Mouse DNA sequence from clone RP23-32O21 on chr...	40	4.4
56	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	4.4

>ref|XM_480056.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1410

 Score =  121 bits (61), Expect = 2e-24
 Identities = 114/131 (87%), Gaps = 3/131 (2%)
 Strand = Plus / Plus

                                                                       
Query: 200 gaggggtacggctccgagggcgacgacgacaaaccccacaggaagcgaggtgagtcatgg 259
           ||||||||||||||||| ||  ||||||||||||  |   |||||||||||||| |||||
Sbjct: 270 gaggggtacggctccgatgggaacgacgacaaacggc---ggaagcgaggtgaggcatgg 326

                                                                       
Query: 260 tcagaagaggagcacaaaaattttctacttggattgaataaataaggaaaaggtgattgg 319
           |||||||||||||||||||| |||||||||||  | | ||| | ||||||||||||||||
Sbjct: 327 tcagaagaggagcacaaaaagtttctacttgggcttagtaagttaggaaaaggtgattgg 386

                      
Query: 320 cgtggcatatc 330
           || ||||||||
Sbjct: 387 cgcggcatatc 397



 Score =  113 bits (57), Expect = 4e-22
 Identities = 107/123 (86%), Gaps = 3/123 (2%)
 Strand = Plus / Plus

                                                                       
Query: 13  cggcggcggtgctggggacgggccgaggcgatgcgggcagtgcgggcaccacgggcacaa 72
           ||||||||| || | ||| ||||||||||| |||  ||||||||||||||||||||||||
Sbjct: 44  cggcggcggggcggcggaggggccgaggcggtgctcgcagtgcgggcaccacgggcacaa 103

                                                                       
Query: 73  cgcacgcacgtgcacagc---gcgccccgtgaagctcttcggcgtgcgcatcggcgacaa 129
           ||| || |||||||| ||   | ||||||||||||| ||||||||||| |||||||||||
Sbjct: 104 cgcgcggacgtgcacggcgaggggccccgtgaagctgttcggcgtgcggatcggcgacaa 163

              
Query: 130 gcc 132
           |||
Sbjct: 164 gcc 166

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>dbj|AK073681.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054K18, full
           insert sequence
          Length = 1411

 Score =  121 bits (61), Expect = 2e-24
 Identities = 114/131 (87%), Gaps = 3/131 (2%)
 Strand = Plus / Plus

                                                                       
Query: 200 gaggggtacggctccgagggcgacgacgacaaaccccacaggaagcgaggtgagtcatgg 259
           ||||||||||||||||| ||  ||||||||||||  |   |||||||||||||| |||||
Sbjct: 271 gaggggtacggctccgatgggaacgacgacaaacggc---ggaagcgaggtgaggcatgg 327

                                                                       
Query: 260 tcagaagaggagcacaaaaattttctacttggattgaataaataaggaaaaggtgattgg 319
           |||||||||||||||||||| |||||||||||  | | ||| | ||||||||||||||||
Sbjct: 328 tcagaagaggagcacaaaaagtttctacttgggcttagtaagttaggaaaaggtgattgg 387

                      
Query: 320 cgtggcatatc 330
           || ||||||||
Sbjct: 388 cgcggcatatc 398



 Score =  113 bits (57), Expect = 4e-22
 Identities = 107/123 (86%), Gaps = 3/123 (2%)
 Strand = Plus / Plus

                                                                       
Query: 13  cggcggcggtgctggggacgggccgaggcgatgcgggcagtgcgggcaccacgggcacaa 72
           ||||||||| || | ||| ||||||||||| |||  ||||||||||||||||||||||||
Sbjct: 45  cggcggcggggcggcggaggggccgaggcggtgctcgcagtgcgggcaccacgggcacaa 104

                                                                       
Query: 73  cgcacgcacgtgcacagc---gcgccccgtgaagctcttcggcgtgcgcatcggcgacaa 129
           ||| || |||||||| ||   | ||||||||||||| ||||||||||| |||||||||||
Sbjct: 105 cgcgcggacgtgcacggcgaggggccccgtgaagctgttcggcgtgcggatcggcgacaa 164

              
Query: 130 gcc 132
           |||
Sbjct: 165 gcc 167

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  113 bits (57), Expect = 4e-22
 Identities = 107/123 (86%), Gaps = 3/123 (2%)
 Strand = Plus / Plus

                                                                           
Query: 13      cggcggcggtgctggggacgggccgaggcgatgcgggcagtgcgggcaccacgggcacaa 72
               ||||||||| || | ||| ||||||||||| |||  ||||||||||||||||||||||||
Sbjct: 2427556 cggcggcggggcggcggaggggccgaggcggtgctcgcagtgcgggcaccacgggcacaa 2427615

                                                                           
Query: 73      cgcacgcacgtgcacagc---gcgccccgtgaagctcttcggcgtgcgcatcggcgacaa 129
               ||| || |||||||| ||   | ||||||||||||| ||||||||||| |||||||||||
Sbjct: 2427616 cgcgcggacgtgcacggcgaggggccccgtgaagctgttcggcgtgcggatcggcgacaa 2427675

                  
Query: 130     gcc 132
               |||
Sbjct: 2427676 gcc 2427678



 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                           
Query: 247     aggtgagtcatggtcagaagaggagcacaaaaattttctacttggattgaataaataagg 306
               ||||||| ||||||||||||||||||||||||| |||||||||||  | | ||| | |||
Sbjct: 2429064 aggtgaggcatggtcagaagaggagcacaaaaagtttctacttgggcttagtaagttagg 2429123

                                       
Query: 307     aaaaggtgattggcgtggcatatc 330
               ||||||||||||||| ||||||||
Sbjct: 2429124 aaaaggtgattggcgcggcatatc 2429147



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 200     gaggggtacggctccgagggcgacgacgacaaac 233
               ||||||||||||||||| ||  ||||||||||||
Sbjct: 2427782 gaggggtacggctccgatgggaacgacgacaaac 2427815



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 10       tgccggcggcggtgctgggga 30
                |||||||||||||||||||||
Sbjct: 19880433 tgccggcggcggtgctgggga 19880413



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                    
Query: 137     aggaagagcgtcagcatgggcaacctcgcgcagctcgccgagggcagcggcgg 189
               |||||||||| ||| ||||| | |||||||||||| || |||||  |||||||
Sbjct: 2427713 aggaagagcgccagtatggggagcctcgcgcagctggcggaggggggcggcgg 2427765

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>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0025F03
          Length = 138042

 Score =  113 bits (57), Expect = 4e-22
 Identities = 107/123 (86%), Gaps = 3/123 (2%)
 Strand = Plus / Plus

                                                                          
Query: 13     cggcggcggtgctggggacgggccgaggcgatgcgggcagtgcgggcaccacgggcacaa 72
              ||||||||| || | ||| ||||||||||| |||  ||||||||||||||||||||||||
Sbjct: 103526 cggcggcggggcggcggaggggccgaggcggtgctcgcagtgcgggcaccacgggcacaa 103585

                                                                          
Query: 73     cgcacgcacgtgcacagc---gcgccccgtgaagctcttcggcgtgcgcatcggcgacaa 129
              ||| || |||||||| ||   | ||||||||||||| ||||||||||| |||||||||||
Sbjct: 103586 cgcgcggacgtgcacggcgaggggccccgtgaagctgttcggcgtgcggatcggcgacaa 103645

                 
Query: 130    gcc 132
              |||
Sbjct: 103646 gcc 103648



 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 75/84 (89%)
 Strand = Plus / Plus

                                                                          
Query: 247    aggtgagtcatggtcagaagaggagcacaaaaattttctacttggattgaataaataagg 306
              ||||||| ||||||||||||||||||||||||| |||||||||||  | | ||| | |||
Sbjct: 105034 aggtgaggcatggtcagaagaggagcacaaaaagtttctacttgggcttagtaagttagg 105093

                                      
Query: 307    aaaaggtgattggcgtggcatatc 330
              ||||||||||||||| ||||||||
Sbjct: 105094 aaaaggtgattggcgcggcatatc 105117



 Score = 44.1 bits (22), Expect = 0.28
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 200    gaggggtacggctccgagggcgacgacgacaaac 233
              ||||||||||||||||| ||  ||||||||||||
Sbjct: 103752 gaggggtacggctccgatgggaacgacgacaaac 103785



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                   
Query: 137    aggaagagcgtcagcatgggcaacctcgcgcagctcgccgagggcagcggcgg 189
              |||||||||| ||| ||||| | |||||||||||| || |||||  |||||||
Sbjct: 103683 aggaagagcgccagtatggggagcctcgcgcagctggcggaggggggcggcgg 103735

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>ref|XM_367246.1| Magnaporthe grisea 70-15 hypothetical protein (MG07171.4) partial
           mRNA
          Length = 1194

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 1   ggcggcgcctgccggcggcggt 22
           ||||||||||||||||||||||
Sbjct: 355 ggcggcgcctgccggcggcggt 334

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>emb|BX832663.1|CNS0A13X Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH87ZF12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1672

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 281 tttctacttggattgaataaataaggaaaaggtgattggcgtggcatatc 330
           ||||| ||||| ||| |||| || || ||||||||||||||| |||||||
Sbjct: 900 tttcttcttggtttggataagtacgggaaaggtgattggcgtagcatatc 949

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>ref|XM_482406.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1837

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 10  tgccggcggcggtgctgggga 30
           |||||||||||||||||||||
Sbjct: 616 tgccggcggcggtgctgggga 636

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>ref|XM_507232.1| PREDICTED Oryza sativa (japonica cultivar-group), P0433E10.14 mRNA
          Length = 1855

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 10  tgccggcggcggtgctgggga 30
           |||||||||||||||||||||
Sbjct: 615 tgccggcggcggtgctgggga 635

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>ref|XM_426187.1| PREDICTED: Gallus gallus similar to PR domain containing 13;
          PR-domain containing protein 13; PR-domain zinc finger
          protein 13 (LOC428629), mRNA
          Length = 618

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 32 gggccgaggcgatgcgggcag 52
          |||||||||||||||||||||
Sbjct: 30 gggccgaggcgatgcgggcag 50

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>gb|AC124041.3| Oryctolagus cuniculus clone LB1-44O5, complete sequence
          Length = 106159

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 289   tggattgaataaataaggaaa 309
             |||||||||||||||||||||
Sbjct: 98159 tggattgaataaataaggaaa 98139

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>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 3/10
          Length = 348475

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 11     gccggcggcggtgctggggacgggc 35
              ||||||||||||||||||| |||||
Sbjct: 306413 gccggcggcggtgctggggtcgggc 306437

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>emb|BX572094.1| Prochlorococcus marinus MED4 complete genome; segment 5/5
          Length = 262202

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 277    aaattttctacttggattgaataaa 301
              ||||||||||||||| |||||||||
Sbjct: 233400 aaattttctacttggcttgaataaa 233376

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>gb|AC092919.5| Homo sapiens 3q BAC RP11-185E8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 101121

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 296   aataaataaggaaaaggtgat 316
             |||||||||||||||||||||
Sbjct: 54154 aataaataaggaaaaggtgat 54134

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>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold
          Length = 1889755

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 289    tggattgaataaataaggaaa 309
              |||||||||||||||||||||
Sbjct: 828907 tggattgaataaataaggaaa 828887

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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 11      gccggcggcggtgctggggacgggc 35
               ||||||||||||||||||| |||||
Sbjct: 1002801 gccggcggcggtgctggggtcgggc 1002825

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>dbj|AP004667.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0433E10
          Length = 144643

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    tgccggcggcggtgctgggga 30
             |||||||||||||||||||||
Sbjct: 48611 tgccggcggcggtgctgggga 48591

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>gb|AF145729.1|AF145729 Oryza sativa homeodomain leucine zipper protein (Oshox5) mRNA,
           complete cds
          Length = 1538

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 10  tgccggcggcggtgctgggga 30
           |||||||||||||||||||||
Sbjct: 332 tgccggcggcggtgctgggga 352

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>dbj|AK110561.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-C12, full
           insert sequence
          Length = 1269

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 10  tgccggcggcggtgctgggga 30
           |||||||||||||||||||||
Sbjct: 225 tgccggcggcggtgctgggga 245

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>dbj|AK101569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050G15, full
           insert sequence
          Length = 1836

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 10  tgccggcggcggtgctgggga 30
           |||||||||||||||||||||
Sbjct: 615 tgccggcggcggtgctgggga 635

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>dbj|AK100634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110A12, full
           insert sequence
          Length = 1854

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 10  tgccggcggcggtgctgggga 30
           |||||||||||||||||||||
Sbjct: 615 tgccggcggcggtgctgggga 635

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>gb|AY739096.1| Takifugu rubripes frRHCE, frSMP1, frNPD014, and frP29 genes, complete
              sequence; frRUNX3 (frRUNX3) gene, complete cds; and
              frCLIC4, frSRRM1, frMTMR9L, frLCK, frHD, and frKCP3 genes,
              complete sequence
          Length = 271832

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     acaacgcacgcacgtgcaca 88
              ||||||||||||||||||||
Sbjct: 243855 acaacgcacgcacgtgcaca 243836

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>ref|NM_187881.1| Oryza sativa (japonica cultivar-group), Ozsa8323 predicted mRNA
          Length = 723

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 catggtcagaagaggagcac 274
           ||||||||||||||||||||
Sbjct: 313 catggtcagaagaggagcac 332

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>ref|XM_512183.1| PREDICTED: Pan troglodytes similar to Potential
            phospholipid-transporting ATPase IIB (HUSSY-20)
            (LOC455484), mRNA
          Length = 11769

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   cggcggtgctggggacgggc 35
            ||||||||||||||||||||
Sbjct: 4964 cggcggtgctggggacgggc 4945

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 4       ggcgcctgccggcggcggtgctgg 27
               ||||||||| ||||||||||||||
Sbjct: 2594338 ggcgcctgcaggcggcggtgctgg 2594361

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>gb|AE008947.1| Agrobacterium tumefaciens str. C58 AT plasmid section 22 of 49 of the
            complete sequence
          Length = 11182

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   ccgtgaagctcttcggcgtg 115
            ||||||||||||||||||||
Sbjct: 4855 ccgtgaagctcttcggcgtg 4874

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>gb|AE007894.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 22 of 50 of
            the complete sequence
          Length = 10197

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 96   ccgtgaagctcttcggcgtg 115
            ||||||||||||||||||||
Sbjct: 7546 ccgtgaagctcttcggcgtg 7565

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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 7       gcctgccggcggcggtgctg 26
               ||||||||||||||||||||
Sbjct: 2217954 gcctgccggcggcggtgctg 2217935

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     gccggcggcggtgctgggga 30
              ||||||||||||||||||||
Sbjct: 470597 gccggcggcggtgctgggga 470616

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>gb|AC130467.2| Homo sapiens chromosome 16 clone CTD-2015G9, complete sequence
          Length = 117601

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    cagaagaggagcacaaaaat 280
              ||||||||||||||||||||
Sbjct: 100490 cagaagaggagcacaaaaat 100471

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>ref|XM_720556.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05217)
            partial mRNA
          Length = 2559

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  tcagaagaggagcacaaaaa 279
            ||||||||||||||||||||
Sbjct: 1057 tcagaagaggagcacaaaaa 1076

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>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence
          Length = 452156

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 161   ctcgcgcagctcgccgagggcagcggcg 188
             ||||||||||||| ||||||| ||||||
Sbjct: 87007 ctcgcgcagctcgacgagggccgcggcg 86980

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>gb|BC003353.1| Homo sapiens mediator of RNA polymerase II transcription, subunit
          10 homolog (NUT2, S. cerevisiae), mRNA (cDNA clone
          MGC:5309 IMAGE:2899986), complete cds
          Length = 805

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 ggggacgggccgaggcgatg 45
          ||||||||||||||||||||
Sbjct: 27 ggggacgggccgaggcgatg 46

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>ref|NM_032286.2| Homo sapiens mediator of RNA polymerase II transcription, subunit
          10 homolog (NUT2, S. cerevisiae) (MED10), mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 ggggacgggccgaggcgatg 45
          ||||||||||||||||||||
Sbjct: 27 ggggacgggccgaggcgatg 46

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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 5       gcgcctgccggcggcggtgctggg 28
               ||||||||||| ||||||||||||
Sbjct: 3382012 gcgcctgccggaggcggtgctggg 3382035

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>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   cggctccgagggcgacgacgacaa 231
             |||| |||||||||||||||||||
Sbjct: 40129 cggcgccgagggcgacgacgacaa 40152

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>gb|AF056246.2| Xanthomonas campestris pv. vesicatoria hrp gene cluster, partial
            sequence
          Length = 14542

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 11   gccggcggcggtgctgggga 30
            ||||||||||||||||||||
Sbjct: 3264 gccggcggcggtgctgggga 3245

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>gb|AC183495.1| Brassica oleracea Contig A, complete sequence
          Length = 356505

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 308    aaaggtgattggcgtggcat 327
              ||||||||||||||||||||
Sbjct: 126057 aaaggtgattggcgtggcat 126038

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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 253     gtcatggtcagaagaggagc 272
               ||||||||||||||||||||
Sbjct: 2735620 gtcatggtcagaagaggagc 2735639

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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     cgggcacaacgcacgcacgt 83
              ||||||||||||||||||||
Sbjct: 214363 cgggcacaacgcacgcacgt 214382

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>gb|AC093307.5| Homo sapiens chromosome 5 clone RP11-810C16, complete sequence
          Length = 176199

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    ggggacgggccgaggcgatg 45
             ||||||||||||||||||||
Sbjct: 50104 ggggacgggccgaggcgatg 50085

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     catggtcagaagaggagcac 274
               ||||||||||||||||||||
Sbjct: 8401117 catggtcagaagaggagcac 8401098

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>gb|AC009154.5| Homo sapiens chromosome 16 clone RP11-58A18, complete sequence
          Length = 181914

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 261    cagaagaggagcacaaaaat 280
              ||||||||||||||||||||
Sbjct: 100607 cagaagaggagcacaaaaat 100626

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 169     gctcgccgagggcagcggcg 188
               ||||||||||||||||||||
Sbjct: 6856218 gctcgccgagggcagcggcg 6856199

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>gb|AF269644.1|AF269644 Staphylococcus epidermidis strain SR1 clone step.1015c10 genomic
            sequence
          Length = 4136

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 298  taaataaggaaaaggtgatt 317
            ||||||||||||||||||||
Sbjct: 1687 taaataaggaaaaggtgatt 1668

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>dbj|AP000492.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0705D01
          Length = 147174

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   catggtcagaagaggagcac 274
             ||||||||||||||||||||
Sbjct: 16072 catggtcagaagaggagcac 16053

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>gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, complete sequence
          Length = 180016

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    cggcggtgctggggacgggc 35
             ||||||||||||||||||||
Sbjct: 79643 cggcggtgctggggacgggc 79662



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    cggcggtgctggggacgggc 35
             ||||||||||||||||||||
Sbjct: 79581 cggcggtgctggggacgggc 79600



 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    cggcggtgctggggacgggc 35
             ||||||||||||||||||||
Sbjct: 79519 cggcggtgctggggacgggc 79538

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>gb|AY453397.1| Homo sapiens transformation-related protein 20 (TRG20) mRNA,
          complete cds
          Length = 449

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 26 ggggacgggccgaggcgatg 45
          ||||||||||||||||||||
Sbjct: 25 ggggacgggccgaggcgatg 44

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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     taaataaggaaaaggtgatt 317
               ||||||||||||||||||||
Sbjct: 1419302 taaataaggaaaaggtgatt 1419321

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>emb|Z23660.1|HS218YB10 H. sapiens (D16S498) DNA segment containing (CA) repeat; clone
           AFM218yb10; single read
          Length = 332

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 cagaagaggagcacaaaaat 280
           ||||||||||||||||||||
Sbjct: 73  cagaagaggagcacaaaaat 92

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 7       gcctgccggcggcggtgctg 26
               ||||||||||||||||||||
Sbjct: 1507730 gcctgccggcggcggtgctg 1507711

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 2       gcggcgcctgccggcggcgg 21
               ||||||||||||||||||||
Sbjct: 1957472 gcggcgcctgccggcggcgg 1957491

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>gb|AF158699.1|AF158699 Burkholderia cepacia D-serine deaminase (dsd), marR homolog, and
           major facilitator superfamily  transporter homolog
           (ORFD) genes, complete cds; and unknown gene
          Length = 5527

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 7   gcctgccggcggcggtgctg 26
           ||||||||||||||||||||
Sbjct: 656 gcctgccggcggcggtgctg 675

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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     taaataaggaaaaggtgatt 317
               ||||||||||||||||||||
Sbjct: 1518190 taaataaggaaaaggtgatt 1518209

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>gb|AC005793.1|AC005793 Homo sapiens chromosome 19, cosmid F23522, complete sequence
          Length = 38968

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    cagtgcgggcaccacgggca 69
             ||||||||||||||||||||
Sbjct: 25169 cagtgcgggcaccacgggca 25188

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>emb|AL808011.11| Mouse DNA sequence from clone RP23-32O21 on chromosome 4, complete
             sequence
          Length = 147327

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   aataaataaggaaaaggtga 315
             ||||||||||||||||||||
Sbjct: 64392 aataaataaggaaaaggtga 64411

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 13      cggcggcggtgctggggacg 32
               ||||||||||||||||||||
Sbjct: 1805195 cggcggcggtgctggggacg 1805214


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,660,411
Number of Sequences: 3902068
Number of extensions: 2660411
Number of successful extensions: 62345
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61359
Number of HSP's gapped (non-prelim): 978
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result