| Clone Name | baet03d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135598.4| Oryza sativa chromosome 3 BAC OSJNBb0021K20 genomic sequence, complete sequence Length = 137220 Score = 73.8 bits (37), Expect = 5e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 432 tcagatttctgcgtgtgccggtcggaccagccgacggcggtgctg 476 |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 106310 tcagatttctgcgtgtgccggtcggagcagccgacggcgctgctg 106266
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 5e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 432 tcagatttctgcgtgtgccggtcggaccagccgacggcggtgctg 476 |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 17383933 tcagatttctgcgtgtgccggtcggagcagccgacggcgctgctg 17383889 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgct 412 ||||||||||||||||||||| Sbjct: 12288937 ggcggcggcggcgctcctgct 12288917 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 14282205 tggcggcggcggcgctcctg 14282224
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 5e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 432 tcagatttctgcgtgtgccggtcggaccagccgacggcggtgctg 476 |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 17377474 tcagatttctgcgtgtgccggtcggagcagccgacggcgctgctg 17377430 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgct 412 ||||||||||||||||||||| Sbjct: 12285700 ggcggcggcggcgctcctgct 12285680 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 14277180 tggcggcggcggcgctcctg 14277199
>dbj|AK099491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026N15, full insert sequence Length = 926 Score = 73.8 bits (37), Expect = 5e-10 Identities = 43/45 (95%) Strand = Plus / Plus Query: 432 tcagatttctgcgtgtgccggtcggaccagccgacggcggtgctg 476 |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct: 162 tcagatttctgcgtgtgccggtcggagcagccgacggcgctgctg 206
>gb|BT017148.1| Zea mays clone EL01N0366H12.c mRNA sequence Length = 902 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 453 tcggaccagccgacggcggtgctg 476 |||||||||||||||||||||||| Sbjct: 7 tcggaccagccgacggcggtgctg 30
>ref|XM_390984.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG10808.1) partial mRNA Length = 1584 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Plus Query: 388 tggtggcggcggcggcgctcctgctgtc 415 ||||||||||||||||||| |||||||| Sbjct: 1116 tggtggcggcggcggcgctgctgctgtc 1143
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 371 ggaggcggcgctggttctggtggcggcggcg 401 |||||||||||||| |||||||| ||||||| Sbjct: 2358894 ggaggcggcgctggctctggtgggggcggcg 2358864
>gb|AC107641.11| Mus musculus chromosome 7, clone RP23-54G8, complete sequence Length = 164725 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 252 ggagaatccttactcctgccag 273 |||||||||||||||||||||| Sbjct: 18123 ggagaatccttactcctgccag 18144
>gb|AC131760.4| Mus musculus BAC clone RP24-220M2 from 10, complete sequence Length = 173472 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 293 tcttccttccttccagcatctc 314 |||||||||||||||||||||| Sbjct: 85073 tcttccttccttccagcatctc 85052
>gb|AC134329.3| Mus musculus BAC clone RP24-310D17 from 10, complete sequence Length = 159173 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 293 tcttccttccttccagcatctc 314 |||||||||||||||||||||| Sbjct: 7207 tcttccttccttccagcatctc 7186
>ref|XM_478229.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1266 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ggtggcggcggcggcgctcct 409 ||||||||||||||||||||| Sbjct: 99 ggtggcggcggcggcgctcct 119
>gb|AC127345.4| Mus musculus BAC clone RP23-217K23 from chromosome 5, complete sequence Length = 210748 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 tgcttctcttccttccttcca 307 ||||||||||||||||||||| Sbjct: 136871 tgcttctcttccttccttcca 136891
>ref|XM_544493.2| PREDICTED: Canis familiaris similar to Chloride intracellular channel protein 4 (mc3s5/mtCLIC) (LOC487367), mRNA Length = 1500 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgct 412 ||||||||||||||||||||| Sbjct: 139 ggcggcggcggcgctcctgct 119
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 374 ggcggcgctggttctggtggcggcggcggcgct 406 |||||||||||| ||| ||||||||||| |||| Sbjct: 83113 ggcggcgctggtgctgctggcggcggcgacgct 83081
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 374 ggcggcgctggttctggtggcggcggcggcgct 406 |||||||||||| ||| ||||||||||| |||| Sbjct: 154534 ggcggcgctggtgctgctggcggcggcgacgct 154566
>emb|AJ720880.1| Gallus gallus mRNA for hypothetical protein, clone 28l23 Length = 2081 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcggcggcg 404 |||||| |||||||||||||||||| Sbjct: 74 gctggtgctggtggcggcggcggcg 98
>ref|NM_001039316.1| Gallus gallus glucuronidase, beta (GUSB), mRNA Length = 2081 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcggcggcg 404 |||||| |||||||||||||||||| Sbjct: 74 gctggtgctggtggcggcggcggcg 98
>dbj|AK094607.1| Homo sapiens cDNA FLJ37288 fis, clone BRAMY2014205 Length = 2381 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 gttctggtggcggcggcggcg 404 ||||||||||||||||||||| Sbjct: 487 gttctggtggcggcggcggcg 507
>gb|AC099562.2| Homo sapiens chromosome 1 clone RP11-213P13, complete sequence Length = 168767 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 290 ttctcttccttccttccagca 310 ||||||||||||||||||||| Sbjct: 105879 ttctcttccttccttccagca 105899
>gb|AC104453.2| Homo sapiens chromosome 1 clone RP4-672J20, complete sequence Length = 112662 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 gttctggtggcggcggcggcg 404 ||||||||||||||||||||| Sbjct: 57554 gttctggtggcggcggcggcg 57574
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ggtggcggcggcggcgctcct 409 ||||||||||||||||||||| Sbjct: 18712192 ggtggcggcggcggcgctcct 18712212
>gb|AC027691.13|AC027691 Homo sapiens chromosome 1 clone RP11-287O16, complete sequence Length = 175977 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 gttctggtggcggcggcggcg 404 ||||||||||||||||||||| Sbjct: 158662 gttctggtggcggcggcggcg 158682
>gb|AC068669.21| Homo sapiens chromosome 17, clone RP11-749I16, complete sequence Length = 194780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 286 gtgcttctcttccttccttcc 306 ||||||||||||||||||||| Sbjct: 41106 gtgcttctcttccttccttcc 41126
>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0029K10, from chromosome 3, complete sequence Length = 135940 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgct 412 ||||||||||||||||||||| Sbjct: 58470 ggcggcggcggcgctcctgct 58450
>dbj|AP005177.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0055I24 Length = 155872 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ggtggcggcggcggcgctcct 409 ||||||||||||||||||||| Sbjct: 44480 ggtggcggcggcggcgctcct 44500
>dbj|AK108797.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-C03, full insert sequence Length = 1266 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ggtggcggcggcggcgctcct 409 ||||||||||||||||||||| Sbjct: 99 ggtggcggcggcggcgctcct 119
>ref|XM_308046.2| Anopheles gambiae str. PEST ENSANGP00000019335 (ENSANGG00000016846), partial mRNA Length = 471 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 ggcgctggttctggtggcggc 397 ||||||||||||||||||||| Sbjct: 402 ggcgctggttctggtggcggc 382
>emb|AJ335083.1|HSA335083 Homo sapiens genomic sequence surrounding NotI site, clone NL1-YP8C Length = 685 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 gttctggtggcggcggcggcg 404 ||||||||||||||||||||| Sbjct: 194 gttctggtggcggcggcggcg 174
>emb|AJ335312.1|HSA335312 Homo sapiens genomic sequence surrounding NotI site, clone NR1-WD8C Length = 644 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 gttctggtggcggcggcggcg 404 ||||||||||||||||||||| Sbjct: 194 gttctggtggcggcggcggcg 174
>emb|AJ322674.1|HSA322674 Homo sapiens genomic sequence surrounding NotI site, clone NR1-PA2C Length = 645 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 gttctggtggcggcggcggcg 404 ||||||||||||||||||||| Sbjct: 194 gttctggtggcggcggcggcg 174
>dbj|AK073228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023N08, full insert sequence Length = 1221 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgct 412 ||||||||||||||||||||| Sbjct: 110 ggcggcggcggcgctcctgct 90
>dbj|AK072674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134J17, full insert sequence Length = 1177 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgct 412 ||||||||||||||||||||| Sbjct: 112 ggcggcggcggcgctcctgct 92
>gb|U62750.1|ZMU62750 Zea mays acidic ribosomal protein P2a-4 (rpp2a-4) mRNA, partial cds Length = 497 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctgc 411 ||||||||||||||||||||| Sbjct: 190 tggcggcggcggcgctcctgc 210
>dbj|AK063858.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D07, full insert sequence Length = 390 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgct 412 ||||||||||||||||||||| Sbjct: 106 ggcggcggcggcgctcctgct 86
>tpe|BN000631.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx102 gene for class III peroxidase 102 precursor, exons 1-3 Length = 1252 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 389 ggtggcggcggcggcgctcct 409 ||||||||||||||||||||| Sbjct: 48 ggtggcggcggcggcgctcct 68
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 377 ggcgctggttctggtggcggcggcg 401 ||||||||| ||||||||||||||| Sbjct: 37292 ggcgctggtgctggtggcggcggcg 37316
>dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT25N16, TM0216, complete sequence Length = 95667 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcggcggcg 404 |||| |||||||||||||||||||| Sbjct: 62781 gctgattctggtggcggcggcggcg 62805
>gb|M11911.1|HS5P67K Human cytomegalovirus 67-kDa phosphorylated protein gene, complete cds Length = 3072 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 388 tggtggcggcggcggcgctcc 408 ||||||||||||||||||||| Sbjct: 2850 tggtggcggcggcggcgctcc 2830
>ref|XM_511432.1| PREDICTED: Pan troglodytes similar to AP1 gamma subunit binding protein 1 isoform 2; gamma-synergin; adaptor-related protein complex 1 gamma subunit-binding protein 1 (LOC454606), mRNA Length = 3708 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcgg 399 |||||||||||||||||||| Sbjct: 49 gctggttctggtggcggcgg 68
>ref|XM_481176.1| Oryza sativa (japonica cultivar-group), mRNA Length = 471 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggcggcggcggcgctcctgc 411 |||||||||||||||||||| Sbjct: 372 ggcggcggcggcgctcctgc 391
>gb|DQ217280.1| Taeniopygia guttata clone 0058P0052G02 S-cyclophilin-like mRNA, complete sequence Length = 928 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ctggtggcggcggcggcgct 406 |||||||||||||||||||| Sbjct: 90 ctggtggcggcggcggcgct 109
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctggtggcggcggcggcgc 405 |||||||||||||||||||| Sbjct: 71129 tctggtggcggcggcggcgc 71110
>gb|BC084536.1| Homo sapiens cDNA clone IMAGE:2819830, containing frame-shift errors Length = 4168 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcgg 399 |||||||||||||||||||| Sbjct: 50 gctggttctggtggcggcgg 69
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 ggcggcggcggcgctcctgc 411 |||||||||||||||||||| Sbjct: 2040938 ggcggcggcggcgctcctgc 2040957
>ref|XM_865837.1| PREDICTED: Bos taurus similar to Laminin gamma-3 chain precursor (Laminin 12 gamma 3 subunit) (LOC614358), partial mRNA Length = 404 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cggcggcggcgctcctgctg 413 |||||||||||||||||||| Sbjct: 8 cggcggcggcgctcctgctg 27
>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01, complete sequence Length = 156691 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctggtggcggcggcggcgc 405 |||||||||||||||||||| Sbjct: 147110 tctggtggcggcggcggcgc 147091
>ref|XM_370239.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06736.4) partial mRNA Length = 3798 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 ttctggtggcggcggcggcg 404 |||||||||||||||||||| Sbjct: 1026 ttctggtggcggcggcggcg 1007
>gb|AY071866.1| Zea mays cytochrome P450 monooxygenase CYP72A26 gene, complete cds Length = 3467 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 1218 tggcggcggcggcgctcctg 1237
>ref|XM_653507.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0995.2), mRNA Length = 3975 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 cactagctcgcgcagagcaa 99 |||||||||||||||||||| Sbjct: 3873 cactagctcgcgcagagcaa 3854
>gb|BC115965.1| Mus musculus solute carrier family 35, member F3, mRNA (cDNA clone MGC:141263 IMAGE:40057290), complete cds Length = 1615 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cggcggcggcgctcctgctg 413 |||||||||||||||||||| Sbjct: 20 cggcggcggcgctcctgctg 39
>gb|AC131912.6| Mus musculus chromosome 9, clone RP24-164A20, complete sequence Length = 204724 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ctccggtgcttctcttcctt 300 |||||||||||||||||||| Sbjct: 102051 ctccggtgcttctcttcctt 102032
>gb|CP000118.1| Anabaena variabilis ATCC 29413 incision element, complete sequence Length = 37151 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 377 ggcgctggttctggtggcggcggcggcg 404 |||||||| |||||||||||||||||| Sbjct: 706 ggcgctggcactggtggcggcggcggcg 679
>gb|AC093734.3| Homo sapiens BAC clone RP11-16P10 from 7, complete sequence Length = 114085 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ggtggcggcggcggcgctcc 408 |||||||||||||||||||| Sbjct: 10780 ggtggcggcggcggcgctcc 10761
>gb|BC115859.1| Mus musculus solute carrier family 35, member F3, mRNA (cDNA clone MGC:141264 IMAGE:40057292), complete cds Length = 1615 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cggcggcggcgctcctgctg 413 |||||||||||||||||||| Sbjct: 20 cggcggcggcgctcctgctg 39
>emb|CR722567.2|CNS0GKH9 Tetraodon nigroviridis full-length cDNA Length = 1436 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ctggttctggtggcggcggc 400 |||||||||||||||||||| Sbjct: 679 ctggttctggtggcggcggc 660
>emb|CR721822.2|CNS0GJWK Tetraodon nigroviridis full-length cDNA Length = 1441 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ctggttctggtggcggcggc 400 |||||||||||||||||||| Sbjct: 679 ctggttctggtggcggcggc 660
>emb|CR676489.2|CNS0FKXX Tetraodon nigroviridis full-length cDNA Length = 1770 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 ctggttctggtggcggcggc 400 |||||||||||||||||||| Sbjct: 1015 ctggttctggtggcggcggc 996
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 375 gcggcgctggttctggtggcggcg 398 ||||||||||| |||||||||||| Sbjct: 241969 gcggcgctggtgctggtggcggcg 241946
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence Length = 187601 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gtggcggcggcggcgctcct 409 |||||||||||||||||||| Sbjct: 60157 gtggcggcggcggcgctcct 60176
>emb|AL023893.1|DMC132E8 Drosophila melanogaster cosmid clone 132E8 Length = 39910 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 ggaggcggcgctggttctggtggcggcggcgg 402 |||||||||| |||| ||||||||||||||| Sbjct: 10290 ggaggcggcggtggtggtggtggcggcggcgg 10321
>emb|AJ296178.1|DLI296178 Drosophila littoralis mRNA for NONA protein Length = 2097 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 369 atggaggcggcgctggttctggtggcggcggcggcg 404 |||||||||||| ||| ||||||||||||||||| Sbjct: 1814 atggaggcggcggcggtggtggtggcggcggcggcg 1849
>gb|AC130887.4| Homo sapiens 3 BAC RP13-517F19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 106897 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cttctcttccttccttccag 308 |||||||||||||||||||| Sbjct: 37213 cttctcttccttccttccag 37232
>gb|AC151908.8| Mus musculus BAC clone RP23-109A22 from chromosome 8, complete sequence Length = 233606 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 cggcggcggcgctcctgctg 413 |||||||||||||||||||| Sbjct: 179143 cggcggcggcgctcctgctg 179124
>gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181360 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 ggaggcggcgctggttctggtggcggcggcgg 402 |||||||||| |||| ||||||||||||||| Sbjct: 49711 ggaggcggcggtggtggtggtggcggcggcgg 49742
>dbj|AK093809.1| Homo sapiens cDNA FLJ36490 fis, clone THYMU2018189 Length = 2462 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 389 ggtggcggcggcggcgctcc 408 |||||||||||||||||||| Sbjct: 23 ggtggcggcggcggcgctcc 42
>ref|NM_206603.1| Drosophila melanogaster CG3056-RB, transcript variant B (CG3056), mRNA Length = 3075 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 ggaggcggcgctggttctggtggcggcggcgg 402 |||||||||| |||| ||||||||||||||| Sbjct: 1367 ggaggcggcggtggtggtggtggcggcggcgg 1398
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 380 gctggttctggtggcggcggcggcgctc 407 |||||| | ||||||||||||||||||| Sbjct: 3000659 gctggtgccggtggcggcggcggcgctc 3000632
>ref|NM_130552.2| Drosophila melanogaster CG3056-RA, transcript variant A (CG3056), mRNA Length = 3022 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 ggaggcggcgctggttctggtggcggcggcgg 402 |||||||||| |||| ||||||||||||||| Sbjct: 1367 ggaggcggcggtggtggtggtggcggcggcgg 1398
>gb|AF195122.1| Rhodobacter sphaeroides photosynthetic gene cluster, partial sequence Length = 66280 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgc 411 |||||||||||||||||||| Sbjct: 5283 ggcggcggcggcgctcctgc 5264
>gb|AC091199.6| Homo sapiens chromosome 17, clone RP11-697E22, complete sequence Length = 189572 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcgg 399 |||||||||||||||||||| Sbjct: 107418 gctggttctggtggcggcgg 107437
>gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164252 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 ggaggcggcgctggttctggtggcggcggcgg 402 |||||||||| |||| ||||||||||||||| Sbjct: 109226 ggaggcggcggtggtggtggtggcggcggcgg 109257
>ref|NM_175434.2| Mus musculus solute carrier family 35, member F3 (Slc35f3), mRNA Length = 2270 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cggcggcggcgctcctgctg 413 |||||||||||||||||||| Sbjct: 154 cggcggcggcgctcctgctg 173
>gb|AF169548.1|AF169548 Homo sapiens gamma-synergin mRNA, complete cds Length = 4022 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcgg 399 |||||||||||||||||||| Sbjct: 62 gctggttctggtggcggcgg 81
>ref|NM_007247.3| Homo sapiens AP1 gamma subunit binding protein 1 (AP1GBP1), transcript variant 1, mRNA Length = 5114 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcgg 399 |||||||||||||||||||| Sbjct: 62 gctggttctggtggcggcgg 81
>ref|NM_080550.2| Homo sapiens AP1 gamma subunit binding protein 1 (AP1GBP1), transcript variant 2, mRNA Length = 5078 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcgg 399 |||||||||||||||||||| Sbjct: 62 gctggttctggtggcggcgg 81
>emb|CR523029.1| Gallus gallus finished cDNA, clone ChEST898a18 Length = 1000 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 ccagctgagctctccggtgcttct 293 ||||||||||||||| |||||||| Sbjct: 717 ccagctgagctctcctgtgcttct 694
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete sequence Length = 158714 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 31434 tggcggcggcggcgctcctg 31453
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gcgcaggcgcagaaccgtgc 34 |||||||||||||||||||| Sbjct: 3055728 gcgcaggcgcagaaccgtgc 3055747
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18, complete sequence Length = 122159 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 93593 tggcggcggcggcgctcctg 93612
>dbj|AK046359.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230375D17 product:weakly similar to BRAIN CDNA, CLONE MNCB-0335 [Mus musculus], full insert sequence Length = 2270 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cggcggcggcgctcctgctg 413 |||||||||||||||||||| Sbjct: 154 cggcggcggcgctcctgctg 173
>gb|AC155827.10| Mus musculus 10 BAC RP24-408N5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 149754 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tctcttccttccttccagca 310 |||||||||||||||||||| Sbjct: 122332 tctcttccttccttccagca 122313
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 gcgctggttctggtggcggc 397 |||||||||||||||||||| Sbjct: 921006 gcgctggttctggtggcggc 920987
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gtggcggcggcggcgctcct 409 |||||||||||||||||||| Sbjct: 31726887 gtggcggcggcggcgctcct 31726906
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gctcatggaggcggcgctgg 384 |||||||||||||||||||| Sbjct: 22489828 gctcatggaggcggcgctgg 22489847
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgc 411 |||||||||||||||||||| Sbjct: 10373939 ggcggcggcggcgctcctgc 10373920
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 tggtggcggcggcggcgctcctgc 411 ||||||||| |||||||||||||| Sbjct: 24323293 tggtggcggtggcggcgctcctgc 24323270 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 2061000 tggcggcggcggcgctcctg 2061019 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 2047144 tggcggcggcggcgctcctg 2047163
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 tctggtggcggcggcggcgc 405 |||||||||||||||||||| Sbjct: 8738687 tctggtggcggcggcggcgc 8738668
>gb|BT003171.1| Drosophila melanogaster SD07604 full insert cDNA Length = 3080 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 ggaggcggcgctggttctggtggcggcggcgg 402 |||||||||| |||| ||||||||||||||| Sbjct: 1338 ggaggcggcggtggtggtggtggcggcggcgg 1369
>gb|BC090930.1| Homo sapiens AP1 gamma subunit binding protein 1, mRNA (cDNA clone MGC:104959 IMAGE:3077104), complete cds Length = 4207 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 gctggttctggtggcggcgg 399 |||||||||||||||||||| Sbjct: 53 gctggttctggtggcggcgg 72
>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13 Length = 163230 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 81862 tggcggcggcggcgctcctg 81881 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 68006 tggcggcggcggcgctcctg 68025
>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1331F11 Length = 132205 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gctcatggaggcggcgctgg 384 |||||||||||||||||||| Sbjct: 5029 gctcatggaggcggcgctgg 5048
>dbj|AP004615.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0414C05 Length = 123105 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 tggtggcggcggcggcgctcctgc 411 ||||||||| |||||||||||||| Sbjct: 47923 tggtggcggtggcggcgctcctgc 47900
>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091D16 Length = 174222 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 ggcggcggcggcgctcctgc 411 |||||||||||||||||||| Sbjct: 74897 ggcggcggcggcgctcctgc 74878
>dbj|AK119470.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-134-A09, full insert sequence Length = 1513 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 168 tggcggcggcggcgctcctg 149
>dbj|AK107912.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G07, full insert sequence Length = 735 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 388 tggtggcggcggcggcgctcctgc 411 ||||||||| |||||||||||||| Sbjct: 139 tggtggcggtggcggcgctcctgc 116
>dbj|AK073027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148M09, full insert sequence Length = 2043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tggcggcggcggcgctcctg 410 |||||||||||||||||||| Sbjct: 217 tggcggcggcggcgctcctg 198
>gb|AC122236.5| Mus musculus BAC clone RP23-141I22 from 8, complete sequence Length = 214447 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 cggcggcggcgctcctgctg 413 |||||||||||||||||||| Sbjct: 108909 cggcggcggcgctcctgctg 108928
>emb|CT572989.7| Mouse DNA sequence from clone RP24-176J14 on chromosome 9, complete sequence Length = 168760 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 ctccggtgcttctcttcctt 300 |||||||||||||||||||| Sbjct: 166950 ctccggtgcttctcttcctt 166931
>dbj|AK064211.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E12, full insert sequence Length = 1331 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 gctcatggaggcggcgctgg 384 |||||||||||||||||||| Sbjct: 553 gctcatggaggcggcgctgg 572
>gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complete sequence Length = 45702 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 tctggtggcggcggcggcgc 405 |||||||||||||||||||| Sbjct: 9409 tctggtggcggcggcggcgc 9428
>gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 of 74 of the complete sequence Length = 308311 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 ggaggcggcgctggttctggtggcggcggcgg 402 |||||||||| |||| ||||||||||||||| Sbjct: 220546 ggaggcggcggtggtggtggtggcggcggcgg 220577
>gb|BT001477.1| Drosophila melanogaster LD21345 full insert cDNA Length = 3052 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 371 ggaggcggcgctggttctggtggcggcggcgg 402 |||||||||| |||| ||||||||||||||| Sbjct: 1318 ggaggcggcggtggtggtggtggcggcggcgg 1349
>gb|AC139382.3| Mus musculus BAC clone RP23-30B24 from 12, complete sequence Length = 180698 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 tgcttctcttccttccttcc 306 |||||||||||||||||||| Sbjct: 128940 tgcttctcttccttccttcc 128921
>gb|AC140324.3| Mus musculus BAC clone RP23-402K14 from 6, complete sequence Length = 200190 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 tgcttctcttccttccttcc 306 |||||||||||||||||||| Sbjct: 136998 tgcttctcttccttccttcc 137017
>emb|AJ304360.1|DLI304360 Drosophila littoralis partial nonA gene, exons 3-4, strain Ala1 Length = 450 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 369 atggaggcggcgctggttctggtggcggcggcggcg 404 |||||||||||| ||| ||||||||||||||||| Sbjct: 216 atggaggcggcggcggtggtggtggcggcggcggcg 251
>emb|AJ304357.1|DLI304357 Drosophila littoralis partial nonA gene, exons 3-4, strain Sa6 Length = 453 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 369 atggaggcggcgctggttctggtggcggcggcggcg 404 |||||||||||| ||| ||||||||||||||||| Sbjct: 216 atggaggcggcggcggtggtggtggcggcggcggcg 251
>emb|AJ304324.1|DLI304324 Drosophila littoralis partial nonA gene, exons 3-4, strain Ku1 Length = 450 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 369 atggaggcggcgctggttctggtggcggcggcggcg 404 |||||||||||| ||| ||||||||||||||||| Sbjct: 216 atggaggcggcggcggtggtggtggcggcggcggcg 251
>emb|AJ304312.1|DLI304312 Drosophila littoralis partial nonA gene, exons 3-4, strain Ou3 Length = 453 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 369 atggaggcggcgctggttctggtggcggcggcggcg 404 |||||||||||| ||| ||||||||||||||||| Sbjct: 216 atggaggcggcggcggtggtggtggcggcggcggcg 251
>emb|AJ304309.1|DLI304309 Drosophila littoralis partial nonA gene, exons 3-4, strain Ou2 Length = 450 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 369 atggaggcggcgctggttctggtggcggcggcggcg 404 |||||||||||| ||| ||||||||||||||||| Sbjct: 216 atggaggcggcggcggtggtggtggcggcggcggcg 251 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,602,413 Number of Sequences: 3902068 Number of extensions: 4602413 Number of successful extensions: 178410 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 175762 Number of HSP's gapped (non-prelim): 2642 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)