ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet03d04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 131 bits (66), Expect = 1e-27 Identities = 114/130 (87%) Strand = Plus / Plus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||||||||| ||| |||| || || ||| ||||||| |||||||||||| ||| |||| Sbjct: 43542 cccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcctac 43601 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 |||||| ||||| ||||||||||||||| | | |||||| ||||||| |||||||||||| Sbjct: 43602 ctcacggccatggcgctccgctgcgccgccaagctcggcatccccaccgccatccaccgc 43661 Query: 223 ctcggcggcg 232 |||||||||| Sbjct: 43662 ctcggcggcg 43671
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 131 bits (66), Expect = 1e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||||||||| ||| |||| || || ||| ||||||| |||||||||||| ||| |||| Sbjct: 52233 cccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcctac 52174 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 |||||| ||||| ||||||||||||||| | | |||||| ||||||| |||||||||||| Sbjct: 52173 ctcacggccatggcgctccgctgcgccgccaagctcggcatccccaccgccatccaccgc 52114 Query: 223 ctcggcggcg 232 |||||||||| Sbjct: 52113 ctcggcggcg 52104
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 131 bits (66), Expect = 1e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||||||||| ||| |||| || || ||| ||||||| |||||||||||| ||| |||| Sbjct: 7139013 cccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcctac 7138954 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 |||||| ||||| ||||||||||||||| | | |||||| ||||||| |||||||||||| Sbjct: 7138953 ctcacggccatggcgctccgctgcgccgccaagctcggcatccccaccgccatccaccgc 7138894 Query: 223 ctcggcggcg 232 |||||||||| Sbjct: 7138893 ctcggcggcg 7138884 Score = 127 bits (64), Expect = 2e-26 Identities = 166/200 (83%) Strand = Plus / Minus Query: 95 tgttcgtccccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcc 154 |||| ||||| ||||||| ||| |||| || ||||| |||| ||||||||||||| || Sbjct: 11303067 tgttggtcccgaccgacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccc 11303008 Query: 155 tctgctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggcca 214 ||| ||||||||| ||||| | ||||| ||||||||| |||||||| ||||||| |||| Sbjct: 11303007 tctcctacctcacctccatgactctccggtgcgccgtccacctcggcatccccaccgcca 11302948 Query: 215 tccaccgcctcggcggcgccgcgtccccgtccgaactggtcgccgccctgtccctgcccg 274 ||||||||| |||||||||||| || | | |||| || ||| |||| |||||||| ||| Sbjct: 11302947 tccaccgccacggcggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctcccca 11302888 Query: 275 cgtccaagctgccgttcctc 294 || ||||||| || |||||| Sbjct: 11302887 cggccaagctccccttcctc 11302868 Score = 119 bits (60), Expect = 5e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 124 caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183 ||||||||| || ||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 11482291 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11482350 Query: 184 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggc 231 ||||||||| | |||||| ||||||| | ||||||||||||||||||| Sbjct: 11482351 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggc 11482398 Score = 115 bits (58), Expect = 9e-23 Identities = 118/138 (85%) Strand = Plus / Minus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||| ||||| ||| |||| || |||||| |||| ||||||||||||||||||| |||| Sbjct: 11494867 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 11494808 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 ||||| ||| | |||||||||||| || | || ||| ||||||| |||||||||||| Sbjct: 11494807 ctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatccaccgc 11494748 Query: 223 ctcggcggcgccgcgtcc 240 |||||||||||||||||| Sbjct: 11494747 ctcggcggcgccgcgtcc 11494730 Score = 101 bits (51), Expect = 1e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 134 ccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgctgcgccgtcg 193 |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| Sbjct: 11550532 ccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcg 11550473 Query: 194 acctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 | |||||| |||| || | ||||| |||||||||||||||| Sbjct: 11550472 agctcggcatcccgaccacgatccatggcctcggcggcgccgc 11550430 Score = 95.6 bits (48), Expect = 8e-17 Identities = 135/164 (82%) Strand = Plus / Minus Query: 106 accgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165 ||||||| ||| |||| || |||||| |||||||||||||||||||||||| || | || Sbjct: 11331664 accgacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtc 11331605 Query: 166 acgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctc 225 ||| ||||| || ||| ||||||||| | |||||| ||||||| |||||||||||| Sbjct: 11331604 acgtccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgct 11331545 Query: 226 ggcggcgccgcgtccccgtccgaactggtcgccgccctgtccct 269 || ||| |||| || | | |||| || ||||||||||||||||| Sbjct: 11331544 ggtggcaccgcctcgctgcccgaccttgtcgccgccctgtccct 11331501 Score = 81.8 bits (41), Expect = 1e-12 Identities = 152/189 (80%) Strand = Plus / Minus Query: 106 accgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165 ||||||| ||| |||| || |||||| ||||| ||| |||||||||||||| || | || Sbjct: 11355312 accgacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtc 11355253 Query: 166 acgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctc 225 ||| ||||| || | | ||||||||| | |||||| ||||||| |||||||||||| | Sbjct: 11355252 acgtccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgcc 11355193 Query: 226 ggcggcgccgcgtccccgtccgaactggtcgccgccctgtccctgcccgcgtccaagctg 285 |||||| |||| || | | |||| || ||||||||||| ||||| || | ||||||| Sbjct: 11355192 ggcggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctc 11355133 Query: 286 ccgttcctc 294 ||||||||| Sbjct: 11355132 ccgttcctc 11355124 Score = 71.9 bits (36), Expect = 1e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 203 tccccacggccatccaccgcctcggcggcgccgcgtccccgtccgaactggtcgccgccc 262 ||||||| |||||||||||| ||||||||||||||| | | |||| ||||| |||| | Sbjct: 11439513 tccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgctc 11439454 Query: 263 tgtccctgcccgcgtccaagctgccgttcctc 294 ||||||| || |||||||||| ||||||||| Sbjct: 11439453 tgtccctcccgccgtccaagctaccgttcctc 11439422 Score = 46.1 bits (23), Expect = 0.066 Identities = 65/79 (82%) Strand = Plus / Minus Query: 158 gctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatcc 217 ||||| ||| ||||||| ||||| |||||||| || |||||| ||||| || |||| Sbjct: 19031109 gctacatcaagcccatggcgctcaagtgcgccgtggagctcggcatccccgacgcgatcc 19031050 Query: 218 accgcctcggcggcgccgc 236 |||||| |||||||||||| Sbjct: 19031049 accgccgcggcggcgccgc 19031031 Score = 46.1 bits (23), Expect = 0.066 Identities = 26/27 (96%) Strand = Plus / Minus Query: 142 tggcgccacagcctctgctacctcacg 168 ||||||||||||||||||||| ||||| Sbjct: 11439574 tggcgccacagcctctgctacatcacg 11439548
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 131 bits (66), Expect = 1e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||||||||| ||| |||| || || ||| ||||||| |||||||||||| ||| |||| Sbjct: 7204984 cccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcctac 7204925 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 |||||| ||||| ||||||||||||||| | | |||||| ||||||| |||||||||||| Sbjct: 7204924 ctcacggccatggcgctccgctgcgccgccaagctcggcatccccaccgccatccaccgc 7204865 Query: 223 ctcggcggcg 232 |||||||||| Sbjct: 7204864 ctcggcggcg 7204855 Score = 127 bits (64), Expect = 2e-26 Identities = 166/200 (83%) Strand = Plus / Minus Query: 95 tgttcgtccccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcc 154 |||| ||||| ||||||| ||| |||| || ||||| |||| ||||||||||||| || Sbjct: 11382256 tgttggtcccgaccgacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccc 11382197 Query: 155 tctgctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggcca 214 ||| ||||||||| ||||| | ||||| ||||||||| |||||||| ||||||| |||| Sbjct: 11382196 tctcctacctcacctccatgactctccggtgcgccgtccacctcggcatccccaccgcca 11382137 Query: 215 tccaccgcctcggcggcgccgcgtccccgtccgaactggtcgccgccctgtccctgcccg 274 ||||||||| |||||||||||| || | | |||| || ||| |||| |||||||| ||| Sbjct: 11382136 tccaccgccacggcggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctcccca 11382077 Query: 275 cgtccaagctgccgttcctc 294 || ||||||| || |||||| Sbjct: 11382076 cggccaagctccccttcctc 11382057 Score = 119 bits (60), Expect = 5e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 124 caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183 ||||||||| || ||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 11561480 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11561539 Query: 184 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggc 231 ||||||||| | |||||| ||||||| | ||||||||||||||||||| Sbjct: 11561540 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggc 11561587 Score = 115 bits (58), Expect = 9e-23 Identities = 118/138 (85%) Strand = Plus / Minus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||| ||||| ||| |||| || |||||| |||| ||||||||||||||||||| |||| Sbjct: 11574056 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 11573997 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 ||||| ||| | |||||||||||| || | || ||| ||||||| |||||||||||| Sbjct: 11573996 ctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatccaccgc 11573937 Query: 223 ctcggcggcgccgcgtcc 240 |||||||||||||||||| Sbjct: 11573936 ctcggcggcgccgcgtcc 11573919 Score = 101 bits (51), Expect = 1e-18 Identities = 90/103 (87%) Strand = Plus / Minus Query: 134 ccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgctgcgccgtcg 193 |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| Sbjct: 11629721 ccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcg 11629662 Query: 194 acctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 | |||||| |||| || | ||||| |||||||||||||||| Sbjct: 11629661 agctcggcatcccgaccacgatccatggcctcggcggcgccgc 11629619 Score = 95.6 bits (48), Expect = 8e-17 Identities = 135/164 (82%) Strand = Plus / Minus Query: 106 accgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165 ||||||| ||| |||| || |||||| |||||||||||||||||||||||| || | || Sbjct: 11410853 accgacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtc 11410794 Query: 166 acgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctc 225 ||| ||||| || ||| ||||||||| | |||||| ||||||| |||||||||||| Sbjct: 11410793 acgtccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgct 11410734 Query: 226 ggcggcgccgcgtccccgtccgaactggtcgccgccctgtccct 269 || ||| |||| || | | |||| || ||||||||||||||||| Sbjct: 11410733 ggtggcaccgcctcgctgcccgaccttgtcgccgccctgtccct 11410690 Score = 81.8 bits (41), Expect = 1e-12 Identities = 152/189 (80%) Strand = Plus / Minus Query: 106 accgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165 ||||||| ||| |||| || |||||| ||||| ||| |||||||||||||| || | || Sbjct: 11434501 accgacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtc 11434442 Query: 166 acgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctc 225 ||| ||||| || | | ||||||||| | |||||| ||||||| |||||||||||| | Sbjct: 11434441 acgtccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgcc 11434382 Query: 226 ggcggcgccgcgtccccgtccgaactggtcgccgccctgtccctgcccgcgtccaagctg 285 |||||| |||| || | | |||| || ||||||||||| ||||| || | ||||||| Sbjct: 11434381 ggcggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctc 11434322 Query: 286 ccgttcctc 294 ||||||||| Sbjct: 11434321 ccgttcctc 11434313 Score = 71.9 bits (36), Expect = 1e-09 Identities = 78/92 (84%) Strand = Plus / Minus Query: 203 tccccacggccatccaccgcctcggcggcgccgcgtccccgtccgaactggtcgccgccc 262 ||||||| |||||||||||| ||||||||||||||| | | |||| ||||| |||| | Sbjct: 11518702 tccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgctc 11518643 Query: 263 tgtccctgcccgcgtccaagctgccgttcctc 294 ||||||| || |||||||||| ||||||||| Sbjct: 11518642 tgtccctcccgccgtccaagctaccgttcctc 11518611 Score = 46.1 bits (23), Expect = 0.066 Identities = 65/79 (82%) Strand = Plus / Minus Query: 158 gctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatcc 217 ||||| ||| ||||||| ||||| |||||||| || |||||| ||||| || |||| Sbjct: 19189758 gctacatcaagcccatggcgctcaagtgcgccgtggagctcggcatccccgacgcgatcc 19189699 Query: 218 accgcctcggcggcgccgc 236 |||||| |||||||||||| Sbjct: 19189698 accgccgcggcggcgccgc 19189680 Score = 46.1 bits (23), Expect = 0.066 Identities = 26/27 (96%) Strand = Plus / Minus Query: 142 tggcgccacagcctctgctacctcacg 168 ||||||||||||||||||||| ||||| Sbjct: 11518763 tggcgccacagcctctgctacatcacg 11518737
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 127 bits (64), Expect = 2e-26 Identities = 166/200 (83%) Strand = Plus / Minus Query: 95 tgttcgtccccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcc 154 |||| ||||| ||||||| ||| |||| || ||||| |||| ||||||||||||| || Sbjct: 89425 tgttggtcccgaccgacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccc 89366 Query: 155 tctgctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggcca 214 ||| ||||||||| ||||| | ||||| ||||||||| |||||||| ||||||| |||| Sbjct: 89365 tctcctacctcacctccatgactctccggtgcgccgtccacctcggcatccccaccgcca 89306 Query: 215 tccaccgcctcggcggcgccgcgtccccgtccgaactggtcgccgccctgtccctgcccg 274 ||||||||| |||||||||||| || | | |||| || ||| |||| |||||||| ||| Sbjct: 89305 tccaccgccacggcggcgccgcctcgctgcccgacctcgtcaccgcgctgtccctcccca 89246 Query: 275 cgtccaagctgccgttcctc 294 || ||||||| || |||||| Sbjct: 89245 cggccaagctccccttcctc 89226 Score = 95.6 bits (48), Expect = 8e-17 Identities = 135/164 (82%) Strand = Plus / Minus Query: 106 accgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165 ||||||| ||| |||| || |||||| |||||||||||||||||||||||| || | || Sbjct: 118022 accgacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtc 117963 Query: 166 acgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctc 225 ||| ||||| || ||| ||||||||| | |||||| ||||||| |||||||||||| Sbjct: 117962 acgtccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgct 117903 Query: 226 ggcggcgccgcgtccccgtccgaactggtcgccgccctgtccct 269 || ||| |||| || | | |||| || ||||||||||||||||| Sbjct: 117902 ggtggcaccgcctcgctgcccgaccttgtcgccgccctgtccct 117859 Score = 81.8 bits (41), Expect = 1e-12 Identities = 152/189 (80%) Strand = Plus / Minus Query: 106 accgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165 ||||||| ||| |||| || |||||| ||||| ||| |||||||||||||| || | || Sbjct: 141670 accgacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtc 141611 Query: 166 acgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctc 225 ||| ||||| || | | ||||||||| | |||||| ||||||| |||||||||||| | Sbjct: 141610 acgtccatggcgtttcagtgcgccgtcaagctcggcatccccaccgccatccaccgcgcc 141551 Query: 226 ggcggcgccgcgtccccgtccgaactggtcgccgccctgtccctgcccgcgtccaagctg 285 |||||| |||| || | | |||| || ||||||||||| ||||| || | ||||||| Sbjct: 141550 ggcggcaccgcctcgctgcccgaccttgtcgccgccctctccctcccgcccgccaagctc 141491 Query: 286 ccgttcctc 294 ||||||||| Sbjct: 141490 ccgttcctc 141482
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 119 bits (60), Expect = 5e-24 Identities = 96/108 (88%) Strand = Plus / Minus Query: 124 caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183 ||||||||| || ||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 131497 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 131438 Query: 184 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggc 231 ||||||||| | |||||| ||||||| | ||||||||||||||||||| Sbjct: 131437 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggc 131390 Score = 115 bits (58), Expect = 9e-23 Identities = 118/138 (85%) Strand = Plus / Plus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||| ||||| ||| |||| || |||||| |||| ||||||||||||||||||| |||| Sbjct: 118921 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 118980 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 ||||| ||| | |||||||||||| || | || ||| ||||||| |||||||||||| Sbjct: 118981 ctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatccaccgc 119040 Query: 223 ctcggcggcgccgcgtcc 240 |||||||||||||||||| Sbjct: 119041 ctcggcggcgccgcgtcc 119058 Score = 101 bits (51), Expect = 1e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 134 ccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgctgcgccgtcg 193 |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| Sbjct: 63256 ccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcg 63315 Query: 194 acctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 | |||||| |||| || | ||||| |||||||||||||||| Sbjct: 63316 agctcggcatcccgaccacgatccatggcctcggcggcgccgc 63358
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 119 bits (60), Expect = 5e-24 Identities = 96/108 (88%) Strand = Plus / Minus Query: 124 caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183 ||||||||| || ||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 17246 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 17187 Query: 184 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggc 231 ||||||||| | |||||| ||||||| | ||||||||||||||||||| Sbjct: 17186 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggc 17139 Score = 115 bits (58), Expect = 9e-23 Identities = 118/138 (85%) Strand = Plus / Plus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||| ||||| ||| |||| || |||||| |||| ||||||||||||||||||| |||| Sbjct: 4670 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 4729 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 ||||| ||| | |||||||||||| || | || ||| ||||||| |||||||||||| Sbjct: 4730 ctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatccaccgc 4789 Query: 223 ctcggcggcgccgcgtcc 240 |||||||||||||||||| Sbjct: 4790 ctcggcggcgccgcgtcc 4807 Score = 71.9 bits (36), Expect = 1e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 203 tccccacggccatccaccgcctcggcggcgccgcgtccccgtccgaactggtcgccgccc 262 ||||||| |||||||||||| ||||||||||||||| | | |||| ||||| |||| | Sbjct: 60024 tccccaccgccatccaccgcgccggcggcgccgcgtcgctgcccgacctggttaccgctc 60083 Query: 263 tgtccctgcccgcgtccaagctgccgttcctc 294 ||||||| || |||||||||| ||||||||| Sbjct: 60084 tgtccctcccgccgtccaagctaccgttcctc 60115 Score = 46.1 bits (23), Expect = 0.066 Identities = 26/27 (96%) Strand = Plus / Plus Query: 142 tggcgccacagcctctgctacctcacg 168 ||||||||||||||||||||| ||||| Sbjct: 59963 tggcgccacagcctctgctacatcacg 59989
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full insert sequence Length = 1300 Score = 119 bits (60), Expect = 5e-24 Identities = 96/108 (88%) Strand = Plus / Plus Query: 124 caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183 ||||||||| || ||||||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 118 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 177 Query: 184 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggc 231 ||||||||| | |||||| ||||||| | ||||||||||||||||||| Sbjct: 178 tgcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggc 225
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 115 bits (58), Expect = 9e-23 Identities = 118/138 (85%) Strand = Plus / Plus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||| ||||| ||| |||| || |||||| |||| ||||||||||||||||||| |||| Sbjct: 81 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 140 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 ||||| ||| | |||||||||||| || | || ||| ||||||| |||||||||||| Sbjct: 141 ctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatccaccgc 200 Query: 223 ctcggcggcgccgcgtcc 240 |||||||||||||||||| Sbjct: 201 ctcggcggcgccgcgtcc 218
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 115 bits (58), Expect = 9e-23 Identities = 118/138 (85%) Strand = Plus / Plus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||| ||||| ||| |||| || |||||| |||| ||||||||||||||||||| |||| Sbjct: 86 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 145 Query: 163 ctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgc 222 ||||| ||| | |||||||||||| || | || ||| ||||||| |||||||||||| Sbjct: 146 ctcacctccacgggactccgctgcgccatcaagctgggcatccccaccgccatccaccgc 205 Query: 223 ctcggcggcgccgcgtcc 240 |||||||||||||||||| Sbjct: 206 ctcggcggcgccgcgtcc 223
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 95.6 bits (48), Expect = 8e-17 Identities = 135/164 (82%) Strand = Plus / Plus Query: 106 accgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165 ||||||| ||| |||| || |||||| |||||||||||||||||||||||| || | || Sbjct: 83 accgacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtc 142 Query: 166 acgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctc 225 ||| ||||| || ||| ||||||||| | |||||| ||||||| |||||||||||| Sbjct: 143 acgtccatggcgttccagtgcgccgtcaagctcggcatccccaccgccatccaccgcgct 202 Query: 226 ggcggcgccgcgtccccgtccgaactggtcgccgccctgtccct 269 || ||| |||| || | | |||| || ||||||||||||||||| Sbjct: 203 ggtggcaccgcctcgctgcccgaccttgtcgccgccctgtccct 246
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 85.7 bits (43), Expect = 8e-14 Identities = 85/99 (85%) Strand = Plus / Plus Query: 134 ccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgctgcgccgtcg 193 |||||||||||||||||| ||| | |||||||||| ||||| |||||||||||||||| Sbjct: 94 ccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctgcgccgtca 153 Query: 194 acctcggcgtccccacggccatccaccgcctcggcggcg 232 | |||||| |||| ||||| |||||| |||||| |||| Sbjct: 154 agctcggcatcccgacggcgatccacaacctcggtggcg 192
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 75.8 bits (38), Expect = 7e-11 Identities = 56/62 (90%) Strand = Plus / Plus Query: 103 cccaccgacgcggagttgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162 ||||| ||||| ||| |||| ||||||||| |||||||||||||||||||||||| |||| Sbjct: 63 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 122 Query: 163 ct 164 || Sbjct: 123 ct 124 Score = 48.1 bits (24), Expect = 0.017 Identities = 36/40 (90%) Strand = Plus / Plus Query: 256 gccgccctgtccctgcccgcgtccaagctgccgttcctcg 295 ||||| ||||||||||| ||| ||||||| |||||||||| Sbjct: 216 gccgcgctgtccctgccagcggccaagctcccgttcctcg 255
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 184 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 ||||||| ||| |||||| ||||| | ||||||||||||| |||||||||||| Sbjct: 9845396 tgcgccgccgagctcggcatccccgccgccatccaccgccgcggcggcgccgc 9845344 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 178 ctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 ||||| ||||||| ||| ||||||||||||| ||||||||||||| || |||||||| Sbjct: 7318265 ctccggtgcgccgccgatctcggcgtccccagcgccatccaccgccggggaggcgccgc 7318207 Score = 44.1 bits (22), Expect = 0.26 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 211 gccatccaccgcctcggcg-gcgccgcgtc 239 ||||||||||||||||||| |||||||||| Sbjct: 25487667 gccatccaccgcctcggcgcgcgccgcgtc 25487638
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 184 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 ||||||| ||| |||||| ||||| | ||||||||||||| |||||||||||| Sbjct: 135638 tgcgccgccgagctcggcatccccgccgccatccaccgccgcggcggcgccgc 135586
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 184 tgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 ||||||| ||| |||||| ||||| | ||||||||||||| |||||||||||| Sbjct: 42031 tgcgccgccgagctcggcatccccgccgccatccaccgccgcggcggcgccgc 41979
>dbj|AP004862.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0001B11 Length = 166004 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 178 ctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 ||||| ||||||| ||| ||||||||||||| ||||||||||||| || |||||||| Sbjct: 24850 ctccggtgcgccgccgatctcggcgtccccagcgccatccaccgccggggaggcgccgc 24792
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 54.0 bits (27), Expect = 3e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 178 ctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcggcgccgc 236 ||||| ||||||| ||| ||||||||||||| ||||||||||||| || |||||||| Sbjct: 153269 ctccggtgcgccgccgatctcggcgtccccagcgccatccaccgccggggaggcgccgc 153211
>ref|NM_191262.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1137 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 170 ccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcg 229 ||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| Sbjct: 92 ccatgtccctccgctgcgccgtcgagctcggcatccctgacgccgtccaccgccgtggcg 151 Query: 230 gcgccg 235 |||||| Sbjct: 152 gcgccg 157
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 170 ccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcg 229 ||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| Sbjct: 31604087 ccatgtccctccgctgcgccgtcgagctcggcatccctgacgccgtccaccgccgtggcg 31604146 Query: 230 gcgccg 235 |||||| Sbjct: 31604147 gcgccg 31604152
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 170 ccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcg 229 ||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| Sbjct: 17819 ccatgtccctccgctgcgccgtcgagctcggcatccctgacgccgtccaccgccgtggcg 17878 Query: 230 gcgccg 235 |||||| Sbjct: 17879 gcgccg 17884
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 52.0 bits (26), Expect = 0.001 Identities = 56/66 (84%) Strand = Plus / Plus Query: 170 ccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatccaccgcctcggcg 229 ||||||| ||||||||||||||||| |||||| |||| ||| ||||||||| |||| Sbjct: 117110 ccatgtccctccgctgcgccgtcgagctcggcatccctgacgccgtccaccgccgtggcg 117169 Query: 230 gcgccg 235 |||||| Sbjct: 117170 gcgccg 117175
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 46.1 bits (23), Expect = 0.066 Identities = 65/79 (82%) Strand = Plus / Minus Query: 158 gctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatcc 217 ||||| ||| ||||||| ||||| |||||||| || |||||| ||||| || |||| Sbjct: 134307 gctacatcaagcccatggcgctcaagtgcgccgtggagctcggcatccccgacgcgatcc 134248 Query: 218 accgcctcggcggcgccgc 236 |||||| |||||||||||| Sbjct: 134247 accgccgcggcggcgccgc 134229
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 46.1 bits (23), Expect = 0.066 Identities = 65/79 (82%) Strand = Plus / Minus Query: 158 gctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccacggccatcc 217 ||||| ||| ||||||| ||||| |||||||| || |||||| ||||| || |||| Sbjct: 33927 gctacatcaagcccatggcgctcaagtgcgccgtggagctcggcatccccgacgcgatcc 33868 Query: 218 accgcctcggcggcgccgc 236 |||||| |||||||||||| Sbjct: 33867 accgccgcggcggcgccgc 33849
>gb|BT017349.1| Zea mays clone EL01N0323G05.c mRNA sequence Length = 773 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 218 accgcctcggcggcgccgcgtccccg 243 ||||||||||||||| |||||||||| Sbjct: 144 accgcctcggcggcggcgcgtccccg 169
>dbj|AP003573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0523F01 Length = 146419 Score = 44.1 bits (22), Expect = 0.26 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 211 gccatccaccgcctcggcg-gcgccgcgtc 239 ||||||||||||||||||| |||||||||| Sbjct: 5984 gccatccaccgcctcggcgcgcgccgcgtc 5955
>dbj|AP005386.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19 Length = 164483 Score = 44.1 bits (22), Expect = 0.26 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 211 gccatccaccgcctcggcg-gcgccgcgtc 239 ||||||||||||||||||| |||||||||| Sbjct: 161676 gccatccaccgcctcggcgcgcgccgcgtc 161647
>emb|X67324.1|ZMFS18 Z.mays MFS18 mRNA Length = 969 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 218 accgcctcggcggcgccgcgtccccg 243 ||||||||||||||| |||||||||| Sbjct: 300 accgcctcggcggcggcgcgtccccg 325
>dbj|AK058562.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D11, full insert sequence Length = 1388 Score = 44.1 bits (22), Expect = 0.26 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Plus Query: 211 gccatccaccgcctcggcg-gcgccgcgtc 239 ||||||||||||||||||| |||||||||| Sbjct: 744 gccatccaccgcctcggcgcgcgccgcgtc 773
>gb|AY106835.1| Zea mays PCO070523 mRNA sequence Length = 727 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 218 accgcctcggcggcgccgcgtccccg 243 ||||||||||||||| |||||||||| Sbjct: 236 accgcctcggcggcggcgcgtccccg 261
>gb|AY103669.1| Zea mays PCO073521 mRNA sequence Length = 1503 Score = 44.1 bits (22), Expect = 0.26 Identities = 61/74 (82%) Strand = Plus / Plus Query: 150 cagcctctgctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccac 209 |||||||| ||||||||||||| |||| || | |||||||| || || ||| |||| || Sbjct: 101 cagcctctcctacctcacgcccctgtcactgaggtgcgccgtggagcttggcatccctac 160 Query: 210 ggccatccaccgcc 223 ||| ||| |||||| Sbjct: 161 ggcgatctaccgcc 174 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 280 aagctgccgttcctcgcccgcctgctgcg 308 ||||||||||||||| |||||||||||| Sbjct: 231 aagctgccgttcctccgccgcctgctgcg 259
>gb|AY103988.1| Zea mays PCO070524 mRNA sequence Length = 1061 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Plus Query: 218 accgcctcggcggcgccgcgtccccg 243 ||||||||||||||| |||||||||| Sbjct: 317 accgcctcggcggcggcgcgtccccg 342
>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete cds Length = 1438 Score = 44.1 bits (22), Expect = 0.26 Identities = 61/74 (82%) Strand = Plus / Plus Query: 150 cagcctctgctacctcacgcccatgtcgctccgctgcgccgtcgacctcggcgtccccac 209 |||||||| ||||||||||||| |||| || | |||||||| || || ||| |||| || Sbjct: 99 cagcctctcctacctcacgcccctgtcactgaggtgcgccgtggagcttggcatccctac 158 Query: 210 ggccatccaccgcc 223 ||| ||| |||||| Sbjct: 159 ggcgatctaccgcc 172 Score = 42.1 bits (21), Expect = 1.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 280 aagctgccgttcctcgcccgcctgctgcg 308 ||||||||||||||| |||||||||||| Sbjct: 229 aagctgccgttcctccgccgcctgctgcg 257
>ref|XM_585828.2| PREDICTED: Bos taurus hypothetical LOC508965 (LOC508965), mRNA Length = 1491 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gttcctcgcccgcctgctgc 307 |||||||||||||||||||| Sbjct: 488 gttcctcgcccgcctgctgc 469
>gb|BC116031.1| Bos taurus cDNA clone MGC:139028 IMAGE:8095211, complete cds Length = 1816 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 gttcctcgcccgcctgctgc 307 |||||||||||||||||||| Sbjct: 518 gttcctcgcccgcctgctgc 499
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 252 ggtcgccgccctgtccctgcccgc 275 ||||||||||||||| |||||||| Sbjct: 3933372 ggtcgccgccctgtcgctgcccgc 3933349
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cgccgtcgacctcggcgtcc 205 |||||||||||||||||||| Sbjct: 372850 cgccgtcgacctcggcgtcc 372869
>gb|AY204470.1| Myxococcus xanthus clone C1255 adventurous gliding motility protein J (agmJ) gene, complete cds Length = 2085 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 237 gtccccgtccgaactggtcgccgc 260 ||||||| |||||||||||||||| Sbjct: 1240 gtccccggccgaactggtcgccgc 1217 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,493,929 Number of Sequences: 3902068 Number of extensions: 1493929 Number of successful extensions: 36009 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 35411 Number of HSP's gapped (non-prelim): 592 length of query: 308 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 286 effective length of database: 17,147,199,772 effective search space: 4904099134792 effective search space used: 4904099134792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
