ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet03c08 |
|---|---|
| Clone Library Name | barley_pub |
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 44.3 bits (103), Expect = 9e-05 Identities = 22/30 (73%), Positives = 23/30 (76%) Frame = +1 Query: 133 GTPVKASRAAPFGEGRITMRKTAGKPKVAA 222 GTP+K FGEGRITMRKT GKPKVAA Sbjct: 15 GTPIKVGS---FGEGRITMRKTVGKPKVAA 41
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 37.7 bits (86), Expect = 0.008 Identities = 20/31 (64%), Positives = 23/31 (74%), Gaps = 2/31 (6%) Frame = +1 Query: 136 TPVKASRAAP--FGEGRITMRKTAGKPKVAA 222 +P A +AA FGEGRITMRK+A KPK AA Sbjct: 10 SPALAGKAAAKVFGEGRITMRKSAAKPKPAA 40
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 37.0 bits (84), Expect = 0.014 Identities = 23/35 (65%), Positives = 24/35 (68%), Gaps = 6/35 (17%) Frame = +1 Query: 136 TPVKASRAAP------FGEGRITMRKTAGKPKVAA 222 +PV A RAAP FGE RITMRKTA KPK AA Sbjct: 10 SPVMA-RAAPSTSSALFGEARITMRKTAAKPKPAA 43
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 36.6 bits (83), Expect = 0.018 Identities = 19/29 (65%), Positives = 20/29 (68%) Frame = +1 Query: 133 GTPVKASRAAPFGEGRITMRKTAGKPKVA 219 G P +R FGEGRITMRKTA KPK A Sbjct: 15 GKPAAGTRDV-FGEGRITMRKTAAKPKPA 42
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 34.7 bits (78), Expect = 0.069 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +1 Query: 169 GEGRITMRKTAGKPK 213 GEGRITMRKTAGKPK Sbjct: 29 GEGRITMRKTAGKPK 43
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 31.6 bits (70), Expect = 0.58 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = +1 Query: 169 GEGRITMRKTAGKPKVAA 222 G GRITMRKTA KPK A+ Sbjct: 29 GNGRITMRKTAAKPKPAS 46
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 31.6 bits (70), Expect = 0.58 Identities = 14/18 (77%), Positives = 15/18 (83%) Frame = +1 Query: 169 GEGRITMRKTAGKPKVAA 222 G GRITMRKTA KPK A+ Sbjct: 29 GNGRITMRKTAAKPKPAS 46
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 31.6 bits (70), Expect = 0.58 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +1 Query: 133 GTPVKASRAAP--FGEGRITMRKTAGKPK 213 G VK S AA G GR+TMRKT KPK Sbjct: 15 GKAVKLSPAASEVLGSGRVTMRKTVAKPK 43
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 31.6 bits (70), Expect = 0.58 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +1 Query: 157 AAPFGEGRITMRKTAGKPKVAA 222 ++ FGE R+TMRKTA K K AA Sbjct: 22 SSSFGEARVTMRKTAAKAKPAA 43
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 31.2 bits (69), Expect = 0.76 Identities = 14/19 (73%), Positives = 15/19 (78%) Frame = +1 Query: 166 FGEGRITMRKTAGKPKVAA 222 FGE R+TMRKTA K K AA Sbjct: 25 FGEARVTMRKTAAKAKPAA 43
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 29.6 bits (65), Expect = 2.2 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 133 GTPVKASRAAP--FGEGRITMRKTAGKPK 213 G V S AA G GR+TMRKT KPK Sbjct: 15 GKAVNLSPAASEVLGSGRVTMRKTVAKPK 43
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 2.9 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%) Frame = +1 Query: 133 GTPVKASRAAP--FGEGRITMRKTAGKP 210 G VK S +AP G GR++MRKT KP Sbjct: 15 GQAVKLSPSAPEITGNGRVSMRKTVAKP 42
>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor| Length = 1901 Score = 28.9 bits (63), Expect = 3.8 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +3 Query: 87 DGGRGDHGALLPGDGRHPGEGLQGGA 164 DGG GA +PGDG G G GGA Sbjct: 1292 DGGNAGFGAGVPGDGGIGGTGGAGGA 1317 Score = 27.7 bits (60), Expect = 8.4 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +3 Query: 87 DGGRGDHGAL-LPGDGRHPGEGLQGG 161 DGG GD GAL G+G G+G QGG Sbjct: 1623 DGGAGDSGALSQDGNGFAGGQGGQGG 1648 Score = 27.7 bits (60), Expect = 8.4 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +3 Query: 87 DGGRGDHGAL-LPGDGRHPGEGLQGG 161 DGG GD GAL G+G G+G QGG Sbjct: 1418 DGGAGDSGALSQDGNGFAGGQGGQGG 1443
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 27.7 bits (60), Expect = 8.4 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = +1 Query: 169 GEGRITMRKTAGKPKVAA 222 GE R+TMRK GK VAA Sbjct: 39 GEARLTMRKATGKKSVAA 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,033,974 Number of Sequences: 219361 Number of extensions: 196308 Number of successful extensions: 837 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 837 length of database: 80,573,946 effective HSP length: 49 effective length of database: 69,825,257 effective search space used: 1675806168 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
