ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet03a11 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 142 bits (357), Expect = 6e-34 Identities = 75/162 (46%), Positives = 98/162 (60%), Gaps = 5/162 (3%) Frame = +2 Query: 2 QNFEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFG 181 +N+ EYQVC VG+VGDLCRAL+ ILP+CD +M LL++L + +HRSVKP I S FG Sbjct: 659 KNYAEYQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFG 718 Query: 182 DIALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGF 361 DIALAIG F+KYL + LQ +M+DY N+LR LEAY+GI+QG Sbjct: 719 DIALAIGGEFKKYLEVVLNTLQQ--ASQAQVDKSDFDMVDYLNELRESCLEAYTGIVQGL 776 Query: 362 KGS-----PKMQLLMPYAPHILQFLDALHNGKDMDDSVMKTA 472 KG P + L+ P IL F+D + +D D V+ A Sbjct: 777 KGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACA 818
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 141 bits (355), Expect = 1e-33 Identities = 74/162 (45%), Positives = 98/162 (60%), Gaps = 5/162 (3%) Frame = +2 Query: 2 QNFEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFG 181 +N+ EYQVC VG+VGDLCRAL+ I+P+CD +M LL++L + +HRSVKP I S FG Sbjct: 659 KNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFG 718 Query: 182 DIALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGF 361 DIALAIG F+KYL + LQ +M+DY N+LR LEAY+GI+QG Sbjct: 719 DIALAIGGEFKKYLEVVLNTLQQ--ASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGL 776 Query: 362 KGS-----PKMQLLMPYAPHILQFLDALHNGKDMDDSVMKTA 472 KG P + L+ P IL F+D + +D D V+ A Sbjct: 777 KGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACA 818
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 137 bits (344), Expect = 2e-32 Identities = 73/162 (45%), Positives = 96/162 (59%), Gaps = 5/162 (3%) Frame = +2 Query: 2 QNFEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFG 181 +N+ E QVC VG+VGDLCRAL+ ILP+CD +M LL++L + +HRSVKP I S FG Sbjct: 658 KNYAECQVCLAAVGLVGDLCRALQSNILPFCDEVMQLLLENLGNENVHRSVKPQILSVFG 717 Query: 182 DIALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGF 361 DI LAIG F+KYL + LQ +M+DY N+LR LEAY+GI+QG Sbjct: 718 DITLAIGGEFKKYLEVVLNTLQQ--ASQAQVDKSDFDMVDYLNELRESCLEAYTGIVQGL 775 Query: 362 KGS-----PKMQLLMPYAPHILQFLDALHNGKDMDDSVMKTA 472 KG P + L+ P IL F+D + +D D V+ A Sbjct: 776 KGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACA 817
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 130 bits (327), Expect = 2e-30 Identities = 68/156 (43%), Positives = 94/156 (60%) Frame = +2 Query: 5 NFEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGD 184 N +EYQ+C++ VG+VGDL RAL KILPYCD MT+L++DL S+ L R+VKP I SCF D Sbjct: 651 NEQEYQLCSVAVGLVGDLARALNAKILPYCDDFMTRLVQDLQSSVLDRNVKPAILSCFSD 710 Query: 185 IALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFK 364 IALAIG F+ YL M +LQ M+DY + LR GI+EAY GI Q + Sbjct: 711 IALAIGAAFQTYLEAVMVLLQQ-ASSVQAPPGANFSMIDYVDALRLGIVEAYVGITQAVR 769 Query: 365 GSPKMQLLMPYAPHILQFLDALHNGKDMDDSVMKTA 472 ++ L+ PY + L+ + + +S+ + A Sbjct: 770 TDNRLDLIQPYVHSMFTLLNMITADPECSESLTRAA 805
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit) (Protein| ketel) Length = 884 Score = 125 bits (314), Expect = 5e-29 Identities = 65/162 (40%), Positives = 99/162 (61%), Gaps = 5/162 (3%) Frame = +2 Query: 2 QNFEEYQVCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFG 181 +NF+EYQVC VG+ GD+ RAL+D ++PY + IMT L+ +L+ +HR+VKP + S FG Sbjct: 665 KNFQEYQVCCAAVGLTGDIFRALKDLMVPYSNEIMTVLINNLTEPTIHRTVKPQVLSAFG 724 Query: 182 DIALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGF 361 DIAL+IG +F YL + ML+ +M +Y N+LR ILEAY+GI+QG Sbjct: 725 DIALSIGNHFLPYLSMVLDMLR--VASNLQTDANNFDMNEYINELRESILEAYTGIIQGL 782 Query: 362 KGSPK-----MQLLMPYAPHILQFLDALHNGKDMDDSVMKTA 472 KG + + + P+ HI+ F+ + D+ DS++ +A Sbjct: 783 KGVDQTAHTDVMHMEPHLMHIISFIKRIAQEGDVSDSMLASA 824
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 68.6 bits (166), Expect = 8e-12 Identities = 43/133 (32%), Positives = 62/133 (46%) Frame = +2 Query: 23 VCAITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIG 202 V VG + D+ +LE+ Y D +M L + +S+ R +KP + S FGDIA IG Sbjct: 655 VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 Query: 203 ENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKGSPKMQ 382 +F YL M + E LDY ++ +L+AY GI+ G P + Sbjct: 715 ADFIPYLNDIMAL--CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKP--E 770 Query: 383 LLMPYAPHILQFL 421 L PY I QF+ Sbjct: 771 ALFPYVGTIFQFI 783
>IMB2_SCHPO (O14089) Putative importin beta-2 subunit (Karyopherin beta-2| subunit) (Importin 104) (Transportin) (TRN) Length = 910 Score = 41.2 bits (95), Expect = 0.001 Identities = 17/60 (28%), Positives = 34/60 (56%) Frame = +2 Query: 44 VVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL 223 ++GD+C D+I PYCD ++ +L + LH S G++AL +G++ ++++ Sbjct: 712 LLGDMCMYCFDQIRPYCDALLVDMLPQMQLPLLHVSASNNAIWSAGEMALQLGKDMQQWV 771
>TOR2_SCHPO (Q9Y7K2) Phosphatidylinositol 3-kinase tor2 (EC 2.7.1.137)| (PtdIns-3-kinase tor2) (PI3-kinase tor2) (PI3K tor2) Length = 2337 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +2 Query: 32 ITVGVVGDLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPP-IFSCFGDIALAIGEN 208 + +G + A+ + I+PY D I + + L + ++S IF C +++A+G+ Sbjct: 312 LAFATIGKVAVAITNSIIPYLDPICDSIKESLKIHIRNKSASDAAIFQCISLLSIALGQA 371 Query: 209 FEKY 220 F Y Sbjct: 372 FSNY 375
>DKK1_MOUSE (O54908) Dickkopf-related protein 1 precursor (Dkk-1) (Dickkopf-1)| (mDkk-1) Length = 272 Score = 32.3 bits (72), Expect = 0.63 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -3 Query: 470 QSSSQNHPYPCHYEERQGTEEYVGHTASVTAS*GNP*ILEECQSRPPRC 324 Q+ PYPC +E G++EY + A G I C+ R RC Sbjct: 76 QTLDNYQPYPCAEDEECGSDEYCSSPSRGAAGVGGVQICLACRKRRKRC 124
>TOR2_YEAST (P32600) Phosphatidylinositol 3-kinase TOR2 (EC 2.7.1.137)| (PtdIns-3-kinase TOR2) (PI3-kinase TOR2) (PI3K TOR2) Length = 2473 Score = 32.0 bits (71), Expect = 0.82 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +2 Query: 47 VGDLCRALEDKILPYCDGIMTQLLKDLSSN-QLHRSVKPPIFSCFGDIALAIGENFEKYL 223 +GD+ + I PY I+ + + L + ++ + + +F C G +A A+G F K+L Sbjct: 421 IGDIAFEVGSSISPYMTLILDNIREGLRTKFKVRKQFEKDLFYCIGKLACALGPAFAKHL 480
>IMB3_SCHPO (O74476) Importin beta-3 subunit| Length = 1095 Score = 32.0 bits (71), Expect = 0.82 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Frame = +2 Query: 14 EYQVCAITVGVVGDLCRALEDKIL-PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIA 190 E +V A + + ++K+L PY D I+ +LL L S + R V+ + +A Sbjct: 467 ESRVQAHAAAAMVNFSEEADNKVLEPYLDDILQRLLTLLQSPK--RYVQEQAVTTIATVA 524 Query: 191 LAIGENFEKYLIYAMPML 244 A + FEKY MP+L Sbjct: 525 DAAAKKFEKYFDAIMPLL 542
>PIR_ARATH (Q5S2C3) Protein PIR (PIR of plants) (Protein PIROGI) (Protein| KLUNKER) (AtSRA1) Length = 1283 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = -1 Query: 454 IIHILAIMKSVKELKNMWGIRHQ*LHLRGTLESLKNARVGLQDAIP*LIGVVEHFIISCG 275 I H+ +I+K + W IR H+ + +L+ GLQ+A+P IG++ G Sbjct: 920 IPHLFSIVKLLGSRSLPWLIRALLDHISNKITTLEPMISGLQEALPKSIGLLSFDGGVTG 979 Query: 274 CMR 266 CM+ Sbjct: 980 CMK 982
>CAND1_PONPY (Q5R6L5) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 29.6 bits (65), Expect = 4.1 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +2 Query: 86 PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 208 PY + T +K L + + + VK SC G I +G+N Sbjct: 563 PYIKDVFTCTIKRLKAADIDQDVKERAISCMGQIICNLGDN 603
>ANFC_TRISC (P55208) C-type natriuretic peptide prohormone precursor (CNP-115)| [Contains: CNP-39; CNP-38; CNP-22] Length = 136 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = +2 Query: 95 DGIMTQLLKDLSSNQLH---RSVKPPIFSCFG 181 + ++ +LLKDLS+N L RS K P CFG Sbjct: 91 EAVLARLLKDLSNNPLRFRGRSKKGPSRGCFG 122
>ANFC_SCYCA (P23259) C-type natriuretic peptide prohormone precursor (CNP-115)| [Contains: CNP-39; CNP-38; CNP-22] Length = 115 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = +2 Query: 95 DGIMTQLLKDLSSNQLH---RSVKPPIFSCFG 181 + ++ +LLKDLS+N L RS K P CFG Sbjct: 70 EAVLARLLKDLSNNPLRFRGRSKKGPSRGCFG 101
>CAND1_RAT (P97536) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +2 Query: 86 PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 208 PY + T +K L + + + VK SC G I +G+N Sbjct: 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603
>CAND1_MOUSE (Q6ZQ38) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +2 Query: 86 PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 208 PY + T +K L + + + VK SC G I +G+N Sbjct: 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603
>CAND1_HUMAN (Q86VP6) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +2 Query: 86 PYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGEN 208 PY + T +K L + + + VK SC G I +G+N Sbjct: 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603
>POL_HV1H2 (P04585) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1434 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Frame = +2 Query: 188 ALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKG 367 ++ + E+F KY + +P + N GI Y+ + QG+KG Sbjct: 703 SVPLDEDFRKYTAFTIPSI---------------------NNETPGIRYQYNVLPQGWKG 741 Query: 368 SPKM------QLLMPYAPH-----ILQFLDALHNGKDMD 451 SP + ++L P+ I Q++D L+ G D++ Sbjct: 742 SPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLE 780
>POL_HV1ND (P18802) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1431 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Frame = +2 Query: 188 ALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKG 367 ++ + E+F KY + +P + N GI Y+ + QG+KG Sbjct: 700 SVPLDEDFRKYTAFTIPSI---------------------NNETPGIRYQYNVLPQGWKG 738 Query: 368 SPKM------QLLMPYAPH-----ILQFLDALHNGKDMD 451 SP + ++L P+ I Q++D L+ G D++ Sbjct: 739 SPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLE 777
>YD183_YEAST (P48569) Hypothetical 37.0 kDa protein in RPL41A-INH1 intergenic| region Length = 320 Score = 28.9 bits (63), Expect = 6.9 Identities = 16/59 (27%), Positives = 28/59 (47%) Frame = +2 Query: 290 EMLDYTNQLRNGILEAYSGILQGFKGSPKMQLLMPYAPHILQFLDALHNGKDMDDSVMK 466 E+L YT + G G + KG+P++ L P IL FL+ D++ +++ Sbjct: 252 ELLGYTEVYKRGTSSRTQGNQKESKGAPELLLNKKTLPLILDFLEVHELESDLNKVILQ 310
>POL_HV1U4 (P24740) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1427 Score = 28.9 bits (63), Expect = 6.9 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Frame = +2 Query: 188 ALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKG 367 ++ + E+F KY + +P + N G+ Y+ + QG+KG Sbjct: 696 SVPLDESFRKYTAFTIPSI---------------------NNETPGVRYQYNVLPQGWKG 734 Query: 368 SPKM------QLLMPYAPH-----ILQFLDALHNGKDMD 451 SP + ++L P+ I Q++D L+ G D++ Sbjct: 735 SPSIFQSSMTKILEPFRSQHPDIVIYQYMDDLYVGSDLE 773
>POL_HV1PV (P03368) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Frame = +2 Query: 188 ALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKG 367 ++ + E+F KY + +P + N GI Y+ + QG+KG Sbjct: 715 SVPLDEDFRKYTAFTIPSI---------------------NNETPGIRYQYNVLPQGWKG 753 Query: 368 SPKM------QLLMPYAPH-----ILQFLDALHNGKDMD 451 SP + ++L P+ I Q++D L+ G D++ Sbjct: 754 SPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLE 792
>POL_HV1BR (P03367) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Frame = +2 Query: 188 ALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKG 367 ++ + E+F KY + +P + N GI Y+ + QG+KG Sbjct: 715 SVPLDEDFRKYTAFTIPSI---------------------NNETPGIRYQYNVLPQGWKG 753 Query: 368 SPKM------QLLMPYAPH-----ILQFLDALHNGKDMD 451 SP + ++L P+ I Q++D L+ G D++ Sbjct: 754 SPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLE 792
>POL_HV1B1 (P03366) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1446 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Frame = +2 Query: 188 ALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKG 367 ++ + E+F KY + +P + N GI Y+ + QG+KG Sbjct: 715 SVPLDEDFRKYTAFTIPSI---------------------NNETPGIRYQYNVLPQGWKG 753 Query: 368 SPKM------QLLMPYAPH-----ILQFLDALHNGKDMD 451 SP + ++L P+ I Q++D L+ G D++ Sbjct: 754 SPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLE 792
>DYHC_PARTE (Q27171) Dynein heavy chain, cytosolic (DYHC) (DHC08)| Length = 4540 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = +2 Query: 53 DLCRALEDKILPYCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGENFEKYL 223 +L L++ L + DG+ T +L+ + SNQ S + GD+ EN L Sbjct: 2168 ELYGRLDNTTLEWTDGVFTSILRKIISNQRQESTRRHWIIFDGDVDPEWAENLNSVL 2224
>RNBP6_HUMAN (O60518) Ran-binding protein 6 (RanBP6)| Length = 1105 Score = 28.5 bits (62), Expect = 9.1 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = +2 Query: 38 VGVVGDLCRALEDKILPYCDGIMTQL--LKDLSSNQLHRSVKPPIFSCFGDIALAIGENF 211 V + + +E+K +PY D M L + +L+ + + ++ C I LA+G+ Sbjct: 521 VTTIASVADTIEEKFVPYYDIFMPSLKHIVELAVQKELKLLRGKTIECISHIGLAVGK-- 578 Query: 212 EKYLIYAMPMLQ 247 EK++ A ++Q Sbjct: 579 EKFMQDASNVMQ 590
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 11/99 (11%) Frame = +2 Query: 188 ALAIGENFEKYLIYAMPMLQSXXXXXXXXXXXXXEMLDYTNQLRNGILEAYSGILQGFKG 367 ++ + E+F KY + +P + N GI Y+ + QG+KG Sbjct: 708 SVPLDEDFRKYTAFTIPSI---------------------NNETPGIRYQYNVLPQGWKG 746 Query: 368 SPKM------QLLMPYAPH-----ILQFLDALHNGKDMD 451 SP + ++L P+ I Q++D L+ G D++ Sbjct: 747 SPAIFQSSMTKILEPFRTKNPEIVIYQYMDDLYVGSDLE 785 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,456,995 Number of Sequences: 219361 Number of extensions: 1494385 Number of successful extensions: 3354 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3273 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3347 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
