ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet03a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor (Po... 115 2e-26
2PGIP3_PHAVU (P58823) Polygalacturonase inhibitor 3 precursor (Po... 52 5e-07
3PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor (Po... 52 5e-07
4PGIP1_PHAVU (P35334) Polygalacturonase inhibitor 1 precursor (Po... 52 5e-07
5PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor (Po... 47 1e-05
6PGIP1_ARATH (Q9M5J9) Polygalacturonase inhibitor 1 precursor (Po... 47 1e-05
7PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor (Polyg... 45 3e-05
8BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 33 0.22
9EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase E... 31 0.64
10TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precur... 31 0.84
11PCX1_HUMAN (Q96RV3) Pecanex-like protein 1 (Pecanex homolog) 28 5.4
12SYC_BUCAI (P57558) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 28 7.1
13GP46_LEIAM (P21978) Surface membrane glycoprotein GP46/M-2 precu... 28 7.1

>PGIP1_ORYSA (Q8GT95) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (Floral organ
           regulator 1)
          Length = 332

 Score =  115 bits (289), Expect = 2e-26
 Identities = 51/62 (82%), Positives = 57/62 (91%)
 Frame = +3

Query: 189 RCPQADRQALLRVKQALGNPATLMTWSPASADCCTWDHLRCDEAGRVNNVFIDGADDVHG 368
           RCP +D+QAL+RVKQ+LGNPATL TWS ASADCC WDH+RCDEAGRVNNVFIDGA+DV G
Sbjct: 26  RCPPSDKQALMRVKQSLGNPATLSTWSLASADCCEWDHVRCDEAGRVNNVFIDGANDVRG 85

Query: 369 QI 374
           QI
Sbjct: 86  QI 87



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>PGIP3_PHAVU (P58823) Polygalacturonase inhibitor 3 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2) (PGIP-3)
          Length = 342

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
 Frame = +3

Query: 192 CPQADRQALLRVKQALGNPATLMTWSPASADCC--TWDHLRCD---EAGRVNNVFIDG 350
           C   D+QALL++K+ LGNP TL +W P + DCC  TW  + CD   +  RVNN+ + G
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG 88



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>PGIP2_PHAVU (P58822) Polygalacturonase inhibitor 2 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2)
          Length = 342

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
 Frame = +3

Query: 192 CPQADRQALLRVKQALGNPATLMTWSPASADCC--TWDHLRCD---EAGRVNNVFIDG 350
           C   D+QALL++K+ LGNP TL +W P + DCC  TW  + CD   +  RVNN+ + G
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG 88



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>PGIP1_PHAVU (P35334) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-1)
          Length = 342

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
 Frame = +3

Query: 192 CPQADRQALLRVKQALGNPATLMTWSPASADCC--TWDHLRCD---EAGRVNNVFIDG 350
           C   D+QALL++K+ LGNP TL +W P + DCC  TW  + CD   +  RVNN+ + G
Sbjct: 32  CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG 88



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>PGIP2_ARATH (Q9M5J8) Polygalacturonase inhibitor 2 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-2)
          Length = 330

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
 Frame = +3

Query: 192 CPQADRQALLRVKQALGNPATLMTWSPASADCCTWDHLRCDEA---GRVNNVFI-DGADD 359
           C + D+  LL++K++L NP  L +W P   DCC+W  L C +A    RV ++ I DG  +
Sbjct: 25  CHKDDKTTLLKIKKSLNNPYHLASWDP-KTDCCSWYCLECGDATVNHRVTSLIIQDG--E 81

Query: 360 VHGQI 374
           + GQI
Sbjct: 82  ISGQI 86



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>PGIP1_ARATH (Q9M5J9) Polygalacturonase inhibitor 1 precursor|
           (Polygalacturonase-inhibiting protein) (PGIP-1)
          Length = 330

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 19/43 (44%), Positives = 27/43 (62%)
 Frame = +3

Query: 192 CPQADRQALLRVKQALGNPATLMTWSPASADCCTWDHLRCDEA 320
           C Q D+  LL++K++L NP  L +W P   DCC+W  L C +A
Sbjct: 25  CNQNDKNTLLKIKKSLNNPYHLASWDP-QTDCCSWYCLECGDA 66



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>PGIP_PYRCO (Q05091) Polygalacturonase inhibitor precursor|
           (Polygalacturonase-inhibiting protein)
          Length = 330

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
 Frame = +3

Query: 192 CPQADRQALLRVKQALGNPATLMTWSPASADCCTWDHLRCDE-AGRVNNVFIDGADDVHG 368
           C   D++ LL++K+A G+P  L +W  +  DCC W  + CD    R+N++ I  A  V G
Sbjct: 27  CNPDDKKVLLQIKKAFGDPYVLASWK-SDTDCCDWYCVTCDSTTNRINSLTI-FAGQVSG 84

Query: 369 QI 374
           QI
Sbjct: 85  QI 86



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>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 201 ADRQALLRVKQALGNP-ATLMTWSPASADCCTWDHLRCDEAGRVNNVFIDGADDVHGQI 374
           A+  AL  +K +L +P   L +W       CTW H+ C+    V  V +  A ++ GQ+
Sbjct: 27  AEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNA-NLSGQL 84



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>EXS_ARATH (Q9LYN8) Leucine-rich repeat receptor protein kinase EXS precursor|
           (EC 2.7.11.1) (Extra sporogenous cells protein) (EXCESS
           MICROSPOROCYTES1 protein)
          Length = 1192

 Score = 31.2 bits (69), Expect = 0.64
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 201 ADRQALLRVKQALGNPATLMTWS-PASADCCTWDHLRCDEAGRVNNVFIDGADDVHGQI 374
           ++  +L+  K++L NP+ L +W+  +SA  C W  + C   GRVN++ +     + GQI
Sbjct: 25  SETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTC-LLGRVNSLSLPSL-SLRGQI 81



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>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 204 DRQALLRVKQALGNPATLMTWSPASADCCTWDHLRCDEAGRVNNVFI 344
           D  A+L +K++L NP +   WS    D C W H+ C    RV  + I
Sbjct: 28  DLSAMLSLKKSL-NPPSSFGWS--DPDPCKWTHIVCTGTKRVTRIQI 71



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>PCX1_HUMAN (Q96RV3) Pecanex-like protein 1 (Pecanex homolog)|
          Length = 2341

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -3

Query: 367  PCTSSAPSMKTLFTRPASSHRRWSHVQQSADAGDHVISVA--GLPSACFTRSSACRSACG 194
            PC  S+ S  +L   P+S   R S V Q   +G   ++    GLPS+  + SS    AC 
Sbjct: 2147 PCRRSSTSQISLRNLPSSIQSRLSMVNQMEPSGQSGLACVQHGLPSS--SSSSQSIPACK 2204

Query: 193  H 191
            H
Sbjct: 2205 H 2205



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>SYC_BUCAI (P57558) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 464

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
 Frame = +3

Query: 243 NPATLMTWSPASADCCTWD----------HLRCDEAGRVNNVFIDGADDVHG 368
           NP   + W  ++ +  +WD          H+ C     + NVF + + D+HG
Sbjct: 177 NPLDFILWKSSNKEEYSWDSPWGKGRPGWHIECSA---ITNVFFNNSIDIHG 225



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>GP46_LEIAM (P21978) Surface membrane glycoprotein GP46/M-2 precursor|
          Length = 476

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 210 QALLRVKQALGNPATLMTWSPASADCCTWDHLRCDEAG 323
           QA  R   ALG+     TW+   +D C+W+H+ C  +G
Sbjct: 51  QAFARAIPALGD-----TWT--GSDFCSWEHIICYSSG 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,577,472
Number of Sequences: 219361
Number of extensions: 289359
Number of successful extensions: 1157
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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