ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet02h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070859.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 1e-08
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 1e-05
3gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare str... 58 1e-05
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
5gb|AY111127.1| Zea mays CL1743_1 mRNA sequence 58 1e-05
6gb|AF058763.1|AF058763 Zea mays uroporphyrinogen decarboxylase (... 58 1e-05
7gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 50 0.003
8gb|AC129507.9| Homo sapiens chromosome 17, clone RP11-1260E13, c... 48 0.013
9gb|AC141424.3| Homo sapiens chromosome 17, clone RP13-803G22, co... 48 0.013
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.051
11dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.051
12ref|XM_481363.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.1
13gb|DQ214977.1| Taeniopygia guttata clone 0064P0022F12 mRNA sequence 40 3.1
14ref|XM_464999.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.1
15gb|BC107462.1| Rattus norvegicus cDNA clone IMAGE:7454573 40 3.1
16gb|AY657796.1| Synthetic construct Peudomonas aeruginosa clone F... 40 3.1
17gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 3.1
18gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 3.1
19gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa,... 40 3.1
20gb|AC145291.2| Homo sapiens chromosome 8, clone XXfos-82799H6, c... 40 3.1
21emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 40 3.1
22gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 3.1
23gb|AC110280.8| Homo sapiens chromosome 8, clone CTD-3232M19, com... 40 3.1
24ref|XM_927478.1| PREDICTED: Homo sapiens similar to Basic helix-... 40 3.1
25ref|XM_926116.1| PREDICTED: Homo sapiens similar to Basic helix-... 40 3.1
26gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 3.1
27tpg|BK000280.1| TPA: TPA_exp: Homo sapiens class II bHLH protein... 40 3.1
28dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
30gb|AC022415.5|AC022415 Homo sapiens chromosome 19 clone CTC-359D... 40 3.1
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.1
32gb|AE004622.1| Pseudomonas aeruginosa PAO1, section 183 of 529 o... 40 3.1
33dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
34dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
35dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
36dbj|AP005487.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
37dbj|AK119355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.1
38dbj|AK070378.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.1
39dbj|AP003721.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.1
40gb|AC003689.1|AC003689 Homo sapiens Chromosome 11q12.2 PAC clone... 40 3.1
41dbj|D89801.1| Mus musculus Ring3 gene, complete cds 40 3.1
42dbj|AB035202.1| Streptomyces coelicolor orf3, orf1, p52, orf2, o... 40 3.1 
>dbj|AK070859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065H03, full
           insert sequence
          Length = 1596

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                       
Query: 183 tccgctgcagcgccgtcggagaggctgttgcggaggcggctgtggccgggacggcggagg 242
           |||||||||||||||||||||||| | | |||||| |||| | || ||||||||||||||
Sbjct: 166 tccgctgcagcgccgtcggagaggttatggcggagacggcggcggtcgggacggcggagg 225

             
Query: 243 ag 244
           ||
Sbjct: 226 ag 227



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 81  caatggcgaccgcgtgcccgcccctctcgctgc 113
           |||||||||||||||||||||| ||||||||||
Sbjct: 79  caatggcgaccgcgtgcccgccgctctcgctgc 111
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 81       caatggcgaccgcgtgcccgcccctctcgctgc 113
                |||||||||||||||||||||| ||||||||||
Sbjct: 12503628 caatggcgaccgcgtgcccgccgctctcgctgc 12503660



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 81       caatggcgaccgcgtgcccgcccctctcgctgc 113
                |||||||||||||||||||||| || |||||||
Sbjct: 12621205 caatggcgaccgcgtgcccgccgctgtcgctgc 12621173



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 170      ccgctcccctccatccgctgcagcgccgtcggag 203
                ||||| ||| || |||||||||||||||||||||
Sbjct: 12621131 ccgctgcccgccgtccgctgcagcgccgtcggag 12621098



 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 183      tccgctgcagcgccgtcggag 203
                |||||||||||||||||||||
Sbjct: 12503715 tccgctgcagcgccgtcggag 12503735
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>gb|AC134885.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1125B03,
             from chromosome 3, complete sequence
          Length = 124550

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 81    caatggcgaccgcgtgcccgcccctctcgctgc 113
             |||||||||||||||||||||| ||||||||||
Sbjct: 84313 caatggcgaccgcgtgcccgccgctctcgctgc 84281



 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 183   tccgctgcagcgccgtcggag 203
             |||||||||||||||||||||
Sbjct: 84226 tccgctgcagcgccgtcggag 84206
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 81       caatggcgaccgcgtgcccgcccctctcgctgc 113
                |||||||||||||||||||||| ||||||||||
Sbjct: 12500391 caatggcgaccgcgtgcccgccgctctcgctgc 12500423



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 81       caatggcgaccgcgtgcccgcccctctcgctgc 113
                |||||||||||||||||||||| || |||||||
Sbjct: 12617968 caatggcgaccgcgtgcccgccgctgtcgctgc 12617936



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                  
Query: 170      ccgctcccctccatccgctgcagcgccgtcggag 203
                ||||| ||| || |||||||||||||||||||||
Sbjct: 12617894 ccgctgcccgccgtccgctgcagcgccgtcggag 12617861



 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 183      tccgctgcagcgccgtcggag 203
                |||||||||||||||||||||
Sbjct: 12500478 tccgctgcagcgccgtcggag 12500498
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>gb|AY111127.1| Zea mays CL1743_1 mRNA sequence
          Length = 1602

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 81  caatggcgaccgcgtgcccgcccctctcgctgccgtccacttccctcctccgc 133
           ||||||| || ||||| ||||| ||||||||||||||||| |||||| |||||
Sbjct: 134 caatggcaacagcgtgtccgccgctctcgctgccgtccacctccctcttccgc 186



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 183 tccgctgcagcgccgtcggagaggc 207
           |||||||||||||||||||||||||
Sbjct: 232 tccgctgcagcgccgtcggagaggc 256
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>gb|AF058763.1|AF058763 Zea mays uroporphyrinogen decarboxylase (les22) mRNA, complete cds
          Length = 1663

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 81  caatggcgaccgcgtgcccgcccctctcgctgccgtccacttccctcctccgc 133
           ||||||| || ||||| ||||| ||||||||||||||||| |||||| |||||
Sbjct: 134 caatggcaacagcgtgtccgccgctctcgctgccgtccacctccctcttccgc 186



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 183 tccgctgcagcgccgtcggagaggc 207
           |||||||||||||||||||||||||
Sbjct: 232 tccgctgcagcgccgtcggagaggc 256
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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 81    caatggcgaccgcgtgcccgcccctctcgctgc 113
             |||||||||||||||||||||| || |||||||
Sbjct: 55784 caatggcgaccgcgtgcccgccgctgtcgctgc 55816



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 170   ccgctcccctccatccgctgcagcgccgtcggag 203
             ||||| ||| || |||||||||||||||||||||
Sbjct: 55858 ccgctgcccgccgtccgctgcagcgccgtcggag 55891
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>gb|AC129507.9| Homo sapiens chromosome 17, clone RP11-1260E13, complete sequence
          Length = 199102

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 162   cccgccagccgctcccctccatccgctgcagc 193
             |||||||||||| ||||||||||| |||||||
Sbjct: 55161 cccgccagccgcccccctccatcctctgcagc 55192
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>gb|AC141424.3| Homo sapiens chromosome 17, clone RP13-803G22, complete sequence
          Length = 140126

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 162   cccgccagccgctcccctccatccgctgcagc 193
             |||||||||||| ||||||||||| |||||||
Sbjct: 78234 cccgccagccgcccccctccatcctctgcagc 78203
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 28     tccccggagccgaggtcgtcgccttcc 54
              |||||||||||||||||||| ||||||
Sbjct: 438661 tccccggagccgaggtcgtccccttcc 438635



 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 28     tccccggagccgaggtcgtcgccttcc 54
              |||||||||||||||||||| ||||||
Sbjct: 430714 tccccggagccgaggtcgtccccttcc 430688



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 31       ccggagccgaggtcgtcgccttcc 54
                ||||||||||||||||| ||||||
Sbjct: 10852904 ccggagccgaggtcgtccccttcc 10852881
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>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 28    tccccggagccgaggtcgtcgccttcc 54
             |||||||||||||||||||| ||||||
Sbjct: 34902 tccccggagccgaggtcgtccccttcc 34876



 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 28    tccccggagccgaggtcgtcgccttcc 54
             |||||||||||||||||||| ||||||
Sbjct: 26955 tccccggagccgaggtcgtccccttcc 26929
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>ref|XM_481363.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2474

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  gccgaggtcgtcgccttccc 55
           ||||||||||||||||||||
Sbjct: 250 gccgaggtcgtcgccttccc 231
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>gb|DQ214977.1| Taeniopygia guttata clone 0064P0022F12 mRNA sequence
          Length = 891

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 203 gaggctgttgcggaggcggc 222
           ||||||||||||||||||||
Sbjct: 679 gaggctgttgcggaggcggc 660
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>ref|XM_464999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 357

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 31  ccggagccgaggtcgtcgccttcc 54
           ||||||||||||||||| ||||||
Sbjct: 320 ccggagccgaggtcgtccccttcc 297
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>gb|BC107462.1| Rattus norvegicus cDNA clone IMAGE:7454573
          Length = 1390

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 142 ccgcgccggcgcaggcctcgcccg 165
           |||||||||| |||||||||||||
Sbjct: 153 ccgcgccggcccaggcctcgcccg 130
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>gb|AY657796.1| Synthetic construct Peudomonas aeruginosa clone FLH045482.01F
           PA1956 gene, partial cds
          Length = 489

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 gcgccggcgcaggcctcgcc 163
           ||||||||||||||||||||
Sbjct: 404 gcgccggcgcaggcctcgcc 423
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    cggcgcaggcctcgcccgcc 167
              ||||||||||||||||||||
Sbjct: 358473 cggcgcaggcctcgcccgcc 358492
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 80      tcaatggcgaccgcgtgcccgccc 103
               |||||||||| |||||||||||||
Sbjct: 2997267 tcaatggcgaacgcgtgcccgccc 2997244
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>gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa, partial sequence
          Length = 32896

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 30    cccggagccgaggtcgtcgccttc 53
             |||| |||||||||||||||||||
Sbjct: 11996 cccgaagccgaggtcgtcgccttc 11973
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>gb|AC145291.2| Homo sapiens chromosome 8, clone XXfos-82799H6, complete sequence
          Length = 41721

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 151  cgcaggcctcgcccgccagc 170
            ||||||||||||||||||||
Sbjct: 2381 cgcaggcctcgcccgccagc 2400
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     ccggagccgaggtcgtcgcc 50
              ||||||||||||||||||||
Sbjct: 168718 ccggagccgaggtcgtcgcc 168737
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    ctcgctgccgtccacttccc 125
              ||||||||||||||||||||
Sbjct: 636227 ctcgctgccgtccacttccc 636208
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>gb|AC110280.8| Homo sapiens chromosome 8, clone CTD-3232M19, complete sequence
          Length = 91099

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   cgcaggcctcgcccgccagc 170
             ||||||||||||||||||||
Sbjct: 58426 cgcaggcctcgcccgccagc 58407
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>ref|XM_927478.1| PREDICTED: Homo sapiens similar to Basic helix-loop-helix
           transcription factor scleraxis (LOC642876), mRNA
          Length = 999

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 cgcaggcctcgcccgccagc 170
           ||||||||||||||||||||
Sbjct: 470 cgcaggcctcgcccgccagc 451
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>ref|XM_926116.1| PREDICTED: Homo sapiens similar to Basic helix-loop-helix
           transcription factor scleraxis (LOC642658), mRNA
          Length = 999

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 cgcaggcctcgcccgccagc 170
           ||||||||||||||||||||
Sbjct: 470 cgcaggcctcgcccgccagc 451
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     cctcaatggcgaccgcgtgc 97
              ||||||||||||||||||||
Sbjct: 308178 cctcaatggcgaccgcgtgc 308159
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>tpg|BK000280.1| TPA: TPA_exp: Homo sapiens class II bHLH protein scleraxis (SCX)
           gene, complete cds
          Length = 2590

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 cgcaggcctcgcccgccagc 170
           ||||||||||||||||||||
Sbjct: 957 cgcaggcctcgcccgccagc 938
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 36       gccgaggtcgtcgccttccc 55
                ||||||||||||||||||||
Sbjct: 11889987 gccgaggtcgtcgccttccc 11890006
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 131      cgcatgacaacccgcgccggcgca 154
                |||||||| |||||||||||||||
Sbjct: 16477499 cgcatgaccacccgcgccggcgca 16477522
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>gb|AC022415.5|AC022415 Homo sapiens chromosome 19 clone CTC-359D24, complete sequence
          Length = 180510

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 158   ctcgcccgccagccgctcccctcc 181
             |||||||||||||||||| |||||
Sbjct: 28933 ctcgcccgccagccgctcacctcc 28956
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     aggcctcgcccgccagccgc 173
               ||||||||||||||||||||
Sbjct: 6352725 aggcctcgcccgccagccgc 6352744
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>gb|AE004622.1| Pseudomonas aeruginosa PAO1, section 183 of 529 of the complete
            genome
          Length = 10163

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  gcgccggcgcaggcctcgcc 163
            ||||||||||||||||||||
Sbjct: 4662 gcgccggcgcaggcctcgcc 4643
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>dbj|AP004613.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1123_G09
          Length = 107491

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 131   cgcatgacaacccgcgccggcgca 154
             |||||||| |||||||||||||||
Sbjct: 85096 cgcatgaccacccgcgccggcgca 85119
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>dbj|AP004168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1756_H07
          Length = 217205

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 31    ccggagccgaggtcgtcgccttcc 54
             ||||||||||||||||| ||||||
Sbjct: 59103 ccggagccgaggtcgtccccttcc 59080
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>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1705_A03
          Length = 168689

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gccgaggtcgtcgccttccc 55
              ||||||||||||||||||||
Sbjct: 168272 gccgaggtcgtcgccttccc 168291
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>dbj|AP005487.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1212_C09
          Length = 120818

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    gccgaggtcgtcgccttccc 55
             ||||||||||||||||||||
Sbjct: 39132 gccgaggtcgtcgccttccc 39151
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>dbj|AK119355.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F11, full
           insert sequence
          Length = 2752

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 131 cgcatgacaacccgcgccggcgca 154
           |||||||| |||||||||||||||
Sbjct: 169 cgcatgaccacccgcgccggcgca 192
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>dbj|AK070378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052L01, full
           insert sequence
          Length = 2475

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 36  gccgaggtcgtcgccttccc 55
           ||||||||||||||||||||
Sbjct: 250 gccgaggtcgtcgccttccc 231
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>dbj|AP003721.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-881M11, complete
              sequence
          Length = 201460

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    ccagccgctcccctccatcc 185
              ||||||||||||||||||||
Sbjct: 107228 ccagccgctcccctccatcc 107247
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>gb|AC003689.1|AC003689 Homo sapiens Chromosome 11q12.2 PAC clone pDJ1081b4 containing human
             mRNA for T-cell glycoprotein CD6, complete sequence
          Length = 137693

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   ccagccgctcccctccatcc 185
             ||||||||||||||||||||
Sbjct: 39321 ccagccgctcccctccatcc 39340
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>dbj|D89801.1| Mus musculus Ring3 gene, complete cds
          Length = 10222

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 155  ggcctcgcccgccagccgctcccc 178
            ||||||||||||| ||||||||||
Sbjct: 3479 ggcctcgcccgcccgccgctcccc 3456
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>dbj|AB035202.1| Streptomyces coelicolor orf3, orf1, p52, orf2, orf4, orf5 genes,
            partial and complete cds
          Length = 7114

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   ccggagccgaggtcgtcgcc 50
            ||||||||||||||||||||
Sbjct: 1722 ccggagccgaggtcgtcgcc 1741


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,419,221
Number of Sequences: 3902068
Number of extensions: 1419221
Number of successful extensions: 28717
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28303
Number of HSP's gapped (non-prelim): 414
length of query: 244
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 222
effective length of database: 17,147,199,772
effective search space: 3806678349384
effective search space used: 3806678349384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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