>COPA_BOVIN (Q27954) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 39/89 (43%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +1

Query: 199  PPEADTPK-ATGAARSALFVAPTPGMPVSQIWTQKSSLAGEHAAAGNFDTAMRLLSRQLG 375
            PPE D P  A G A    FV PT G   +QIW   S L  +H  AG+F+TAMRLL  Q+G
Sbjct: 889  PPELDIPPGAAGGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVG 948

Query: 376  IKNFAPLKALFLDAHMGSHTFLRAFCSAP 462
            +  F P K LFL  +    T  +A    P
Sbjct: 949  VTQFGPYKQLFLQTYARGRTTYQALPCLP 977

>COPA_HUMAN (P53621) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
            (HEPCOP) (HEP-COP) [Contains: Xenin (Xenopsin-related
            peptide); Proxenin]
          Length = 1224

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 39/89 (43%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +1

Query: 199  PPEAD-TPKATGAARSALFVAPTPGMPVSQIWTQKSSLAGEHAAAGNFDTAMRLLSRQLG 375
            PPE D +P A G A    FV PT G   +QIW   S L  +H  AG+F+TAMRLL  Q+G
Sbjct: 889  PPELDISPGAAGGAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVG 948

Query: 376  IKNFAPLKALFLDAHMGSHTFLRAFCSAP 462
            +  F P K LFL  +    T  +A    P
Sbjct: 949  VIQFGPYKQLFLQTYARGRTTYQALPCLP 977

>COPA_YEAST (P53622) Coatomer subunit alpha (Alpha-coat protein) (Alpha-COP)|
          Length = 1201

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +1

Query: 286  IWTQKSSLAGEHAAAGNFDTAMRLLSRQLGIKNFAPLKALFLDAHMGSHTFL 441
            IW + S L     AAG FD A++ LS+Q+G+    PLK  F + + G  T++
Sbjct: 903  IWIKNSKLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYI 954

>CENPB_CRIGR (P48988) Major centromere autoantigen B (Centromere protein B)|
           (CENP-B)
          Length = 606

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 16  GRAEQEEDYDDAGGDWGDEDLEIVDASAVIENGDAGHADESE 141
           G  E+EE+ ++ G + G E  E+ +   V E GD    +E E
Sbjct: 423 GEGEEEEEEEEEGEEEGGEGEEVGEEEEVEEEGDESDEEEEE 464

>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 19/84 (22%), Positives = 31/84 (36%)
 Frame = +3

Query: 228 WCGPLCFVCGSHTRHACQSNLDSEVISCWGACCSWEF*HSNASA*PPIGHQELCSSEGLV 407
           +C  +   CG      C  +  +  +  W +C   E    N    P     E+ +S    
Sbjct: 50  YCTEMKDNCGEGGDVKCWKDGSNLPVQTWSSCVPSELFGPNGKFKP----SEIPNSSNCP 105

Query: 408 S*CAYGQSHLSACILQCSSDTCCC 479
           + C  G   ++ C L C + T CC
Sbjct: 106 TNCENGVEWVNLCGLSCDAKTACC 129

>PRMA_NEIMB (Q9JXW2) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 295

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 265 PGMPVSQIWTQKSSLA--GEHAAAGNFDTAMRLLSRQLGIKNFA 390
           PGMP  QIW Q   +A  GEH  A      ++  +++ G+K+ A
Sbjct: 49  PGMPAEQIWQQSKVIALFGEHDEAA---AIIQTATQECGLKDLA 89

>PRMA_NEIMA (Q9JW08) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 295

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 265 PGMPVSQIWTQKSSLA--GEHAAAGNFDTAMRLLSRQLGIKNFA 390
           PGMP  QIW Q   +A  GEH  A      ++  +++ G+K+ A
Sbjct: 49  PGMPAEQIWQQSKVIALFGEHDEAA---AIIQTAAQECGLKDLA 89

>CRUM1_HUMAN (P82279) Crumbs homolog 1 precursor|
          Length = 1406

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
 Frame = +3

Query: 237 PLCFVCGSHTRHACQSNLDSEVISCW----GACCSWEF*HSNASA*PPIGHQELCSSE-- 398
           PLC+    H    C+ ++D+    CW    GA C  +    N++     G     SSE  
Sbjct: 303 PLCWSKPCHNNATCEDSVDNYTCHCWPGYTGAQCEIDLNECNSNPCQSNGECVELSSEKQ 362

Query: 399 -----GLVS*CAYGQSHLSACILQ--------------CSSDTC 473
                GL S  +Y ++    CI Q              CSS+ C
Sbjct: 363 YGRITGLPSSFSYHEASGYVCICQPGFTGIHCEEDVNECSSNPC 406

>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 29/90 (32%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
 Frame = +3

Query: 216 TKSYWCGPLCFV--CGSHTRHACQSNLDSEVISCWGACCSWEF*HSNASA*PPIGHQELC 389
           ++S  C P C    CGS     CQS       SC   CCS       +S   P      C
Sbjct: 166 SQSSCCKPCCCSSGCGSS---CCQS-------SCCKPCCS------QSSCCKPC-----C 204

Query: 390 SSEGLVS*CAYGQSHLSACILQCSSDTCCC 479
            S G  S C       S+C   CSS + CC
Sbjct: 205 CSSGCGSSCCQ-----SSCCKPCSSQSSCC 229

>GAP2_DROME (Q8T498) Probable Ras GTPase-activating protein|
          Length = 1556

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 372  QLAAKQTHCCVKIPSCSMLPSKR*LLSPNLTDRHAGCGSHKQSRAGRTSSF 220
            QL+AK +HC     S S  PS     SP  +   A  GSH    A +  S+
Sbjct: 1114 QLSAKSSHCSSGYQSISTNPSPSQSSSPVESQLKAAMGSHNAPLAFKNPSY 1164

>NBEA_CAEEL (Q19317) Putative neurobeachin homolog|
          Length = 2507

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 1    GLDATGR-AEQEEDYDDAGGDWGDEDLEIVDASAVIENGDAGHADESE 141
            G+++ G   E+EE+ ++  GD G     I  A+A ++ GD    DE E
Sbjct: 1353 GIESNGNDGEEEENGEEGQGDDGGRIAAIKVANADMKRGDGNEYDEEE 1400

>DNAJM_MYCPN (P75354) DnaJ-like protein MG200 homolog|
          Length = 910

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = +1

Query: 46  DAGGDWGDEDLEIVD-ASAVIENGDAGHADESETN 147
           DAG DW +++ E+ + AS +I + DAG ADE  T+
Sbjct: 182 DAGMDW-EQNAEVANSASEIIPDVDAGLADEFNTS 215


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,294,710
Number of Sequences: 219361
Number of extensions: 1157044
Number of successful extensions: 2856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2837
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)