ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet02h02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol precursor -orf2, putative Fourf gag/pol protein, putative NADP-dependent malic enzyme, putative argonaute protein, putative pinhead protein, putative pol protein, putative gag protein, putative TNP2, r1-B73 proteins, putative genetic modifier, putative S-receptor kinase, putative aldose reductase-related protein, putative glutathione peroxidase, putative glycerol 3-phosphate permease, putative response regulator, and putative 4-coumarate-CoA ligase-like protein genes, complete cds Length = 290350 Score = 285 bits (144), Expect = 6e-74 Identities = 354/424 (83%) Strand = Plus / Plus Query: 12 ggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcctcctgaccatc 71 ||||||||||| || ||||| |||| ||| ||||||| || ||| ||||||| ||| | Sbjct: 268477 ggcatgttcttcgcgggccacctgggcgacagggtggacctgagggtcctcctcaccgta 268536 Query: 72 ggaatggtaggtaccgggctgttcaccgccgctttcggagctggctactggctcaacatc 131 || ||||| || |||||||| ||||||||||| |||||||| |||||||||||| || | Sbjct: 268537 gggatggtggggaccgggctcttcaccgccgccttcggagcgggctactggctcgacgtg 268596 Query: 132 cacagcttctactactttctgggcgtccagatgatcgccggcctgtttcagtcgagcggc 191 ||||||||||||||||| |||| ||| |||||| | ||||||||||| |||||| ||| Sbjct: 268597 cacagcttctactacttcctggccgtgcagatggtggccggcctgttccagtcgtccggg 268656 Query: 192 tggccctccgtggtcgccgtcgtcggcaattggttcgggaagagcaagagggggctgatc 251 ||||| || ||||| || || |||||||| |||||||||||||||||||||||||| ||| Sbjct: 268657 tggccgtcggtggtggcggtggtcggcaactggttcgggaagagcaagagggggctcatc 268716 Query: 252 atggggatttggaacgctcacacctccgtgggaaacatatctggctcactgatcgcggct 311 |||||| | |||||||| |||||||||||||| ||||| || ||||| ||| |||| ||| Sbjct: 268717 atgggggtgtggaacgcccacacctccgtggggaacatttccggctcgctggtcgccgct 268776 Query: 312 gccatgctgaagtttgggtggagctggtcgtttgcagtgcccggtgccatgatcgcgctg 371 |||||| ||| || |||||| ||||| |||| |||||||||| | | ||||||||| Sbjct: 268777 gccatgttgaggtacgggtggtgctggagctttgtggtgcccggtgtcgtcatcgcgctg 268836 Query: 372 gtcgggctcgccgtctttctcttcttgcctgttgaccccgaggtgatcggcgtcgaggag 431 |||||||||||||| || || |||||||||||| || || ||||| || ||| ||||| Sbjct: 268837 gtcgggctcgccgtgttcctgctcttgcctgttgcgcctgatgtgattggagtccaggag 268896 Query: 432 gatc 435 |||| Sbjct: 268897 gatc 268900
>ref|XM_473452.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1548 Score = 246 bits (124), Expect = 5e-62 Identities = 367/448 (81%) Strand = Plus / Plus Query: 1 tatatgcaattggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcc 60 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 350 tatatgcaatcggcatgttcttcgctggccatttgggtgatcgggtggatctcaggatac 409 Query: 61 tcctgaccatcggaatggtaggtaccgggctgttcaccgccgctttcggagctggctact 120 | ||||||||||||||| |||| || || | ||||| || || || || || ||| ||| Sbjct: 410 ttctgaccatcggaatgataggcactggatttttcactgctgcctttggtgccggcaact 469 Query: 121 ggctcaacatccacagcttctactactttctgggcgtccagatgatcgccggcctgtttc 180 |||||||||| |||| |||||||||||||||||| || |||||||| || |||||||||| Sbjct: 470 ggctcaacatacacaacttctactactttctgggtgttcagatgatggctggcctgtttc 529 Query: 181 agtcgagcggctggccctccgtggtcgccgtcgtcggcaattggttcgggaagagcaaga 240 |||| ||||||||| || ||||| || || || || |||||||| || |||||||| | Sbjct: 530 agtcatccggctggccatctgtggttgcagttgttggtaattggtttggaaagagcaaaa 589 Query: 241 gggggctgatcatggggatttggaacgctcacacctccgtgggaaacatatctggctcac 300 | |||||||| ||||| || ||||| ||||| || || ||||||||||||||||| || Sbjct: 590 gagggctgataatgggaatctggaatgctcatacatctgtgggaaacatatctggttcct 649 Query: 301 tgatcgcggctgccatgctgaagtttgggtggagctggtcgtttgcagtgcccggtgcca 360 | || || ||||| ||| |||||||||| ||| |||||||||||||| || || | | Sbjct: 650 taattgcagctgcaatgttgaagtttggatggtcatggtcgtttgcagtccctggagtga 709 Query: 361 tgatcgcgctggtcgggctcgccgtctttctcttcttgcctgttgaccccgaggtgatcg 420 ||||||| | || ||||| || || ||||| ||||||||||| | || ||| |||| | Sbjct: 710 tgatcgcagtcgttgggcttgcagtgtttctgttcttgcctgtcggtccggagatgattg 769 Query: 421 gcgtcgaggaggatcgccatgtgaagga 448 | ||||||||||| ||||| |||||| Sbjct: 770 gaatcgaggaggatatccatgagaagga 797
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence Length = 127506 Score = 246 bits (124), Expect = 5e-62 Identities = 367/448 (81%) Strand = Plus / Minus Query: 1 tatatgcaattggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcc 60 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 27358 tatatgcaatcggcatgttcttcgctggccatttgggtgatcgggtggatctcaggatac 27299 Query: 61 tcctgaccatcggaatggtaggtaccgggctgttcaccgccgctttcggagctggctact 120 | ||||||||||||||| |||| || || | ||||| || || || || || ||| ||| Sbjct: 27298 ttctgaccatcggaatgataggcactggatttttcactgctgcctttggtgccggcaact 27239 Query: 121 ggctcaacatccacagcttctactactttctgggcgtccagatgatcgccggcctgtttc 180 |||||||||| |||| |||||||||||||||||| || |||||||| || |||||||||| Sbjct: 27238 ggctcaacatacacaacttctactactttctgggtgttcagatgatggctggcctgtttc 27179 Query: 181 agtcgagcggctggccctccgtggtcgccgtcgtcggcaattggttcgggaagagcaaga 240 |||| ||||||||| || ||||| || || || || |||||||| || |||||||| | Sbjct: 27178 agtcatccggctggccatctgtggttgcagttgttggtaattggtttggaaagagcaaaa 27119 Query: 241 gggggctgatcatggggatttggaacgctcacacctccgtgggaaacatatctggctcac 300 | |||||||| ||||| || ||||| ||||| || || ||||||||||||||||| || Sbjct: 27118 gagggctgataatgggaatctggaatgctcatacatctgtgggaaacatatctggttcct 27059 Query: 301 tgatcgcggctgccatgctgaagtttgggtggagctggtcgtttgcagtgcccggtgcca 360 | || || ||||| ||| |||||||||| ||| |||||||||||||| || || | | Sbjct: 27058 taattgcagctgcaatgttgaagtttggatggtcatggtcgtttgcagtccctggagtga 26999 Query: 361 tgatcgcgctggtcgggctcgccgtctttctcttcttgcctgttgaccccgaggtgatcg 420 ||||||| | || ||||| || || ||||| ||||||||||| | || ||| |||| | Sbjct: 26998 tgatcgcagtcgttgggcttgcagtgtttctgttcttgcctgtcggtccggagatgattg 26939 Query: 421 gcgtcgaggaggatcgccatgtgaagga 448 | ||||||||||| ||||| |||||| Sbjct: 26938 gaatcgaggaggatatccatgagaagga 26911
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 246 bits (124), Expect = 5e-62 Identities = 367/448 (81%) Strand = Plus / Minus Query: 1 tatatgcaattggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcc 60 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 27758690 tatatgcaatcggcatgttcttcgctggccatttgggtgatcgggtggatctcaggatac 27758631 Query: 61 tcctgaccatcggaatggtaggtaccgggctgttcaccgccgctttcggagctggctact 120 | ||||||||||||||| |||| || || | ||||| || || || || || ||| ||| Sbjct: 27758630 ttctgaccatcggaatgataggcactggatttttcactgctgcctttggtgccggcaact 27758571 Query: 121 ggctcaacatccacagcttctactactttctgggcgtccagatgatcgccggcctgtttc 180 |||||||||| |||| |||||||||||||||||| || |||||||| || |||||||||| Sbjct: 27758570 ggctcaacatacacaacttctactactttctgggtgttcagatgatggctggcctgtttc 27758511 Query: 181 agtcgagcggctggccctccgtggtcgccgtcgtcggcaattggttcgggaagagcaaga 240 |||| ||||||||| || ||||| || || || || |||||||| || |||||||| | Sbjct: 27758510 agtcatccggctggccatctgtggttgcagttgttggtaattggtttggaaagagcaaaa 27758451 Query: 241 gggggctgatcatggggatttggaacgctcacacctccgtgggaaacatatctggctcac 300 | |||||||| ||||| || ||||| ||||| || || ||||||||||||||||| || Sbjct: 27758450 gagggctgataatgggaatctggaatgctcatacatctgtgggaaacatatctggttcct 27758391 Query: 301 tgatcgcggctgccatgctgaagtttgggtggagctggtcgtttgcagtgcccggtgcca 360 | || || ||||| ||| |||||||||| ||| |||||||||||||| || || | | Sbjct: 27758390 taattgcagctgcaatgttgaagtttggatggtcatggtcgtttgcagtccctggagtga 27758331 Query: 361 tgatcgcgctggtcgggctcgccgtctttctcttcttgcctgttgaccccgaggtgatcg 420 ||||||| | || ||||| || || ||||| ||||||||||| | || ||| |||| | Sbjct: 27758330 tgatcgcagtcgttgggcttgcagtgtttctgttcttgcctgtcggtccggagatgattg 27758271 Query: 421 gcgtcgaggaggatcgccatgtgaagga 448 | ||||||||||| ||||| |||||| Sbjct: 27758270 gaatcgaggaggatatccatgagaagga 27758243
>dbj|AK103226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123B14, full insert sequence Length = 2158 Score = 246 bits (124), Expect = 5e-62 Identities = 367/448 (81%) Strand = Plus / Plus Query: 1 tatatgcaattggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcc 60 |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| | Sbjct: 556 tatatgcaatcggcatgttcttcgctggccatttgggtgatcgggtggatctcaggatac 615 Query: 61 tcctgaccatcggaatggtaggtaccgggctgttcaccgccgctttcggagctggctact 120 | ||||||||||||||| |||| || || | ||||| || || || || || ||| ||| Sbjct: 616 ttctgaccatcggaatgataggcactggatttttcactgctgcctttggtgccggcaact 675 Query: 121 ggctcaacatccacagcttctactactttctgggcgtccagatgatcgccggcctgtttc 180 |||||||||| |||| |||||||||||||||||| || |||||||| || |||||||||| Sbjct: 676 ggctcaacatacacaacttctactactttctgggtgttcagatgatggctggcctgtttc 735 Query: 181 agtcgagcggctggccctccgtggtcgccgtcgtcggcaattggttcgggaagagcaaga 240 |||| ||||||||| || ||||| || || || || |||||||| || |||||||| | Sbjct: 736 agtcatccggctggccatctgtggttgcagttgttggtaattggtttggaaagagcaaaa 795 Query: 241 gggggctgatcatggggatttggaacgctcacacctccgtgggaaacatatctggctcac 300 | |||||||| ||||| || ||||| ||||| || || ||||||||||||||||| || Sbjct: 796 gagggctgataatgggaatctggaatgctcatacatctgtgggaaacatatctggttcct 855 Query: 301 tgatcgcggctgccatgctgaagtttgggtggagctggtcgtttgcagtgcccggtgcca 360 | || || ||||| ||| |||||||||| ||| |||||||||||||| || || | | Sbjct: 856 taattgcagctgcaatgttgaagtttggatggtcatggtcgtttgcagtccctggagtga 915 Query: 361 tgatcgcgctggtcgggctcgccgtctttctcttcttgcctgttgaccccgaggtgatcg 420 ||||||| | || ||||| || || ||||| ||||||||||| | || ||| |||| | Sbjct: 916 tgatcgcagtcgttgggcttgcagtgtttctgttcttgcctgtcggtccggagatgattg 975 Query: 421 gcgtcgaggaggatcgccatgtgaagga 448 | ||||||||||| ||||| |||||| Sbjct: 976 gaatcgaggaggatatccatgagaagga 1003
>dbj|AK105088.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B04, full insert sequence Length = 1228 Score = 83.8 bits (42), Expect = 5e-13 Identities = 183/230 (79%) Strand = Plus / Plus Query: 219 aattggttcgggaagagcaagagggggctgatcatggggatttggaacgctcacacctcc 278 |||||||| || |||||||| || |||||||| ||||| || ||||| ||||| || || Sbjct: 1 aattggtttggaaagagcaaaagagggctgataatgggaatctggaatgctcatacatct 60 Query: 279 gtgggaaacatatctggctcactgatcgcggctgccatgctgaagtttgggtggagctgg 338 ||||||||||||||||| || | || || ||||| ||| |||||||||| ||| ||| Sbjct: 61 gtgggaaacatatctggttccttaattgcagctgcaatgttgaagtttggatggtcatgg 120 Query: 339 tcgtttgcagtgcccggtgccatgatcgcgctggtcgggctcgccgtctttctcttcttg 398 ||||||||||| || || | |||||||| | || ||||| || || ||||| |||||| Sbjct: 121 tcgtttgcagtccctggagtgatgatcgcagtcgttgggcttgcagtgtttctgttcttg 180 Query: 399 cctgttgaccccgaggtgatcggcgtcgaggaggatcgccatgtgaagga 448 ||||| | || ||| |||| || ||||||||||| ||||| |||||| Sbjct: 181 cctgtcggtccggagatgattggaatcgaggaggatatccatgagaagga 230
>ref|NM_001024486.1| Bos taurus solute carrier family 37 (glycerol-3-phosphate transporter), member 2 (SLC37A2), mRNA Length = 2782 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 216 ggcaattggttcgggaagagcaagagggggctgatcatggggatttggaacgctcacacc 275 ||||| |||||||||||| ||||| ||||||| |||||||| || |||||| | ||||| Sbjct: 526 ggcaactggttcgggaagggcaagcgggggctcatcatgggcatctggaactcccacacg 585 Query: 276 tccgtgggaaacat 289 |||||||| ||||| Sbjct: 586 tccgtgggcaacat 599
>gb|BT021842.1| Bos taurus solute carrier family 37 (glycerol-3-phosphate transporter), member 2 (SLC37A2), mRNA, complete cds Length = 2782 Score = 67.9 bits (34), Expect = 3e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 216 ggcaattggttcgggaagagcaagagggggctgatcatggggatttggaacgctcacacc 275 ||||| |||||||||||| ||||| ||||||| |||||||| || |||||| | ||||| Sbjct: 526 ggcaactggttcgggaagggcaagcgggggctcatcatgggcatctggaactcccacacg 585 Query: 276 tccgtgggaaacat 289 |||||||| ||||| Sbjct: 586 tccgtgggcaacat 599
>dbj|AK143636.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430004H18 product:solute carrier family 37 (glycerol-3-phosphate transporter), member 1, full insert sequence Length = 3354 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 1431 ctgatcatggggatttggaactcccacacctccgtgggcaacat 1474
>dbj|AK153706.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630053B11 product:solute carrier family 37 (glycerol-3-phosphate transporter), member 1, full insert sequence Length = 3352 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 1428 ctgatcatggggatttggaactcccacacctccgtgggcaacat 1471
>dbj|AK163990.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330039O21 product:solute carrier family 37 (glycerol-3-phosphate transporter), member 1, full insert sequence Length = 2529 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 607 ctgatcatggggatttggaactcccacacctccgtgggcaacat 650
>gb|AC154652.2| Mus musculus BAC clone RP24-261L18 from chromosome 17, complete sequence Length = 166922 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 90296 ctgatcatggggatttggaactcccacacctccgtgggcaacat 90339
>dbj|AK033656.1| Mus musculus adult male cecum cDNA, RIKEN full-length enriched library, clone:9130209C10 product:GLYCEROL-3-PHOSPHATE TRANSPORTER (G-3-P TRANSPORTER) (G-3-P PERMEASE) homolog [Homo sapiens], full insert sequence Length = 2747 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 894 ctgatcatggggatttggaactcccacacctccgtgggcaacat 937
>ref|XM_574727.1| PREDICTED: Rattus norvegicus solute carrier family 37 (glycerol-3-phosphate transporter), member 1 (predicted) (Slc37a1_predicted), mRNA Length = 2934 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 952 ctgatcatggggatttggaactcccacacctccgtgggcaacat 995
>dbj|AK199953.1| Mus musculus cDNA, clone:Y1G0132O03, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000024836, based on BLAT search Length = 179 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 99 ctgatcatggggatttggaactcccacacctccgtgggcaacat 142
>gb|BC027294.1| Mus musculus solute carrier family 37 (glycerol-3-phosphate transporter), member 1, mRNA (cDNA clone MGC:28167 IMAGE:3985469), complete cds Length = 2947 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 1005 ctgatcatggggatttggaactcccacacctccgtgggcaacat 1048
>gb|BC081990.1| Rattus norvegicus solute carrier family 37 (glycerol-3-phosphate transporter), member 1, mRNA (cDNA clone MGC:94188 IMAGE:7129340), complete cds Length = 2957 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 952 ctgatcatggggatttggaactcccacacctccgtgggcaacat 995
>ref|NM_001011944.1| Rattus norvegicus solute carrier family 37 (glycerol-3-phosphate transporter), member 1 (Slc37a1), mRNA Length = 2957 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 952 ctgatcatggggatttggaactcccacacctccgtgggcaacat 995
>ref|NM_153062.1| Mus musculus solute carrier family 37 (glycerol-3-phosphate transporter), member 1 (Slc37a1), mRNA Length = 2947 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 246 ctgatcatggggatttggaacgctcacacctccgtgggaaacat 289 ||||||||||||||||||||| | |||||||||||||| ||||| Sbjct: 1005 ctgatcatggggatttggaactcccacacctccgtgggcaacat 1048
>ref|XM_467088.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2016 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 158 ccagatgatcgccggcctgtttcagtcgagcggctggccctccgtggtcgccgtcgtcgg 217 |||| |||||||||| || | ||||| | ||||||||||||||| |||||| ||||||| Sbjct: 450 ccaggtgatcgccggattgctccagtccaccggctggccctccgtcgtcgccatcgtcgg 509 Query: 218 caattggttc 227 ||| |||||| Sbjct: 510 caactggttc 519
>ref|XM_417849.1| PREDICTED: Gallus gallus similar to solute carrier family 37 (glycerol-3-phosphate transporter), member 2 (LOC419704), mRNA Length = 1917 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 222 tggttcgggaagagcaagagggggctgatcatggggatttggaacgctcacacctccgtg 281 ||||| |||||| | |||||||| ||||||||||| || |||||| | |||||||||||| Sbjct: 691 tggtttgggaagggaaagaggggtctgatcatgggcatctggaactcacacacctccgtg 750 Query: 282 gg 283 || Sbjct: 751 gg 752
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 158 ccagatgatcgccggcctgtttcagtcgagcggctggccctccgtggtcgccgtcgtcgg 217 |||| |||||||||| || | ||||| | ||||||||||||||| |||||| ||||||| Sbjct: 26342302 ccaggtgatcgccggattgctccagtccaccggctggccctccgtcgtcgccatcgtcgg 26342361 Query: 218 caattggttc 227 ||| |||||| Sbjct: 26342362 caactggttc 26342371
>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:P0491E01 Length = 136150 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 158 ccagatgatcgccggcctgtttcagtcgagcggctggccctccgtggtcgccgtcgtcgg 217 |||| |||||||||| || | ||||| | ||||||||||||||| |||||| ||||||| Sbjct: 74654 ccaggtgatcgccggattgctccagtccaccggctggccctccgtcgtcgccatcgtcgg 74713 Query: 218 caattggttc 227 ||| |||||| Sbjct: 74714 caactggttc 74723
>dbj|AK063448.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F09, full insert sequence Length = 2016 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 158 ccagatgatcgccggcctgtttcagtcgagcggctggccctccgtggtcgccgtcgtcgg 217 |||| |||||||||| || | ||||| | ||||||||||||||| |||||| ||||||| Sbjct: 450 ccaggtgatcgccggattgctccagtccaccggctggccctccgtcgtcgccatcgtcgg 509 Query: 218 caattggttc 227 ||| |||||| Sbjct: 510 caactggttc 519
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 60.0 bits (30), Expect = 7e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 158 ccagatgatcgccggcctgtttcagtcgagcggctggccctccgtggtcgccgtcgtcgg 217 |||| |||||||||| || | ||||| | ||||||||||||||| |||||| ||||||| Sbjct: 65415 ccaggtgatcgccggattgctccagtccaccggctggccctccgtcgtcgccatcgtcgg 65474 Query: 218 caattggttc 227 ||| |||||| Sbjct: 65475 caactggttc 65484
>ref|XM_480175.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1482 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 234 agcaagagggggctgatcatggggatttggaacgctcacacctccgtgggaaacatatct 293 ||||||||||| |||| ||||| |||||||| || ||||| || || || ||||||||| Sbjct: 520 agcaagaggggattgattatgggcatttggaatgcacacacttctgtcggcaacatatct 579 Query: 294 ggctcactgatcgcggctgccatgctgaagtttgggtggagctggtcgtttgc 346 || |||||| | || || ||||||||||||||||| ||||||| ||||| Sbjct: 580 ggttcactgctggctgcatttctgctgaagtttgggtggggctggtcatttgc 632 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 10 ttggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcctcctgac 67 |||| |||||||||||||| ||| | |||||||| ||||| | |||||| ||||||| Sbjct: 296 ttgggatgttctttgctggacatcttggtgaccgcatggatttaaggatcttcctgac 353
>ref|XM_546421.2| PREDICTED: Canis familiaris similar to solute carrier family 37 (glycerol-3-phosphate transporter), member 2 (LOC489303), mRNA Length = 1527 Score = 58.0 bits (29), Expect = 3e-05 Identities = 83/101 (82%) Strand = Plus / Plus Query: 189 ggctggccctccgtggtcgccgtcgtcggcaattggttcgggaagagcaagagggggctg 248 ||||||||||| ||||| || ||| ||||| |||||||||||| | ||| ||||||| Sbjct: 520 ggctggccctcggtggtgacctgcgttggcaactggttcgggaaggggaagcgggggctc 579 Query: 249 atcatggggatttggaacgctcacacctccgtgggaaacat 289 |||||||| || |||||| | ||||| ||||| || ||||| Sbjct: 580 atcatgggcatctggaactcccacacatccgtaggcaacat 620
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 234 agcaagagggggctgatcatggggatttggaacgctcacacctccgtgggaaacatatct 293 ||||||||||| |||| ||||| |||||||| || ||||| || || || ||||||||| Sbjct: 3276577 agcaagaggggattgattatgggcatttggaatgcacacacttctgtcggcaacatatct 3276636 Query: 294 ggctcactgatcgcggctgccatgctgaagtttgggtggagctggtcgtttgc 346 || |||||| | || || ||||||||||||||||| ||||||| ||||| Sbjct: 3276637 ggttcactgctggctgcatttctgctgaagtttgggtggggctggtcatttgc 3276689 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 10 ttggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcctcctgac 67 |||| |||||||||||||| ||| | |||||||| ||||| | |||||| ||||||| Sbjct: 3276353 ttgggatgttctttgctggacatcttggtgaccgcatggatttaaggatcttcctgac 3276410
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 58.0 bits (29), Expect = 3e-05 Identities = 92/113 (81%) Strand = Plus / Plus Query: 234 agcaagagggggctgatcatggggatttggaacgctcacacctccgtgggaaacatatct 293 ||||||||||| |||| ||||| |||||||| || ||||| || || || ||||||||| Sbjct: 54144 agcaagaggggattgattatgggcatttggaatgcacacacttctgtcggcaacatatct 54203 Query: 294 ggctcactgatcgcggctgccatgctgaagtttgggtggagctggtcgtttgc 346 || |||||| | || || ||||||||||||||||| ||||||| ||||| Sbjct: 54204 ggttcactgctggctgcatttctgctgaagtttgggtggggctggtcatttgc 54256 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 10 ttggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcctcctgac 67 |||| |||||||||||||| ||| | |||||||| ||||| | |||||| ||||||| Sbjct: 53920 ttgggatgttctttgctggacatcttggtgaccgcatggatttaaggatcttcctgac 53977
>dbj|AP006083.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT44D21, TM0127a, complete sequence Length = 26994 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 222 tggttcgggaagagcaagagggggctgatcatggggatttggaacgctcacac 274 ||||| || ||||||||||| ||| |||||||||| |||||||| |||||||| Sbjct: 23109 tggtttggaaagagcaagagagggttgatcatgggaatttggaatgctcacac 23161
>dbj|AK121377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127F09, full insert sequence Length = 2278 Score = 50.1 bits (25), Expect = 0.006 Identities = 91/113 (80%) Strand = Plus / Plus Query: 234 agcaagagggggctgatcatggggatttggaacgctcacacctccgtgggaaacatatct 293 ||||||||||| |||| ||||| |||||||| || ||||| || || || ||||||||| Sbjct: 815 agcaagaggggattgattatgggcatttggaatgcacacacttctgtcggcaacatatct 874 Query: 294 ggctcactgatcgcggctgccatgctgaagtttgggtggagctggtcgtttgc 346 || || ||| | || || ||||||||||||||||| ||||||| ||||| Sbjct: 875 ggttctctgctggctgcatttctgctgaagtttgggtggggctggtcatttgc 927 Score = 44.1 bits (22), Expect = 0.40 Identities = 49/58 (84%) Strand = Plus / Plus Query: 10 ttggcatgttctttgctggccatttgggtgaccgggtggatctcaggatcctcctgac 67 |||| |||||||||||||| ||| | |||||||| ||||| | |||||| ||||||| Sbjct: 591 ttgggatgttctttgctggacatcttggtgaccgcatggatttaaggatcttcctgac 648
>dbj|AK063143.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G11, full insert sequence Length = 1138 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 316 tgctgaagtttgggtggagctggtcgtttgc 346 ||||||||||||||||| ||||||| ||||| Sbjct: 100 tgctgaagtttgggtggggctggtcatttgc 130
>ref|XM_476322.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1416 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Plus Query: 192 tggccctccgtggtcgccgtcgtcggcaattggttcgg 229 ||||||| ||| |||||||||||||| || |||||||| Sbjct: 415 tggccctgcgtcgtcgccgtcgtcgggaactggttcgg 452
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 192 tggccctccgtggtcgccgtcgtcggcaattggttcgg 229 ||||||| ||| |||||||||||||| || |||||||| Sbjct: 3975177 tggccctgcgtcgtcgccgtcgtcgggaactggttcgg 3975140
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0019L07 Length = 131650 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 192 tggccctccgtggtcgccgtcgtcggcaattggttcgg 229 ||||||| ||| |||||||||||||| || |||||||| Sbjct: 18832 tggccctgcgtcgtcgccgtcgtcgggaactggttcgg 18795
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 44.1 bits (22), Expect = 0.40 Identities = 34/38 (89%) Strand = Plus / Minus Query: 192 tggccctccgtggtcgccgtcgtcggcaattggttcgg 229 ||||||| ||| |||||||||||||| || |||||||| Sbjct: 81053 tggccctgcgtcgtcgccgtcgtcgggaactggttcgg 81016
>ref|NM_117861.2| Arabidopsis thaliana sugar porter/ transporter AT4G17550 mRNA, complete cds Length = 1925 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Plus Query: 219 aattggttcgggaagagcaagagggggctgatcatggggatttggaacgctca 271 |||||||| ||||| || ||||| || || || |||||||||||||| ||||| Sbjct: 595 aattggtttgggaaaaggaagagaggtcttataatggggatttggaatgctca 647
>emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8 Length = 207674 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 219 aattggttcgggaagagcaagagggggctgatcatggggatttggaacgctca 271 |||||||| ||||| || ||||| || || || |||||||||||||| ||||| Sbjct: 143916 aattggtttgggaaaaggaagagaggtcttataatggggatttggaatgctca 143864
>emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46 Length = 198788 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 219 aattggttcgggaagagcaagagggggctgatcatggggatttggaacgctca 271 |||||||| ||||| || ||||| || || || |||||||||||||| ||||| Sbjct: 133281 aattggtttgggaaaaggaagagaggtcttataatggggatttggaatgctca 133229
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 tcgcgctggtcgggctcgccg 384 ||||||||||||||||||||| Sbjct: 2620157 tcgcgctggtcgggctcgccg 2620177
>emb|Z97206.1|HS359N14 Human DNA sequence from clone RP3-359N14 on chromosome 6q16.3-21 Contains a novel gene and a chromatin assembly factor 1 p60 subunit (CHAF1B) pseudogene, complete sequence Length = 136299 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 tttctcttcttgcctgttga 406 |||||||||||||||||||| Sbjct: 63667 tttctcttcttgcctgttga 63648
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 cgaggtgatcggcgtcgagg 429 |||||||||||||||||||| Sbjct: 2928121 cgaggtgatcggcgtcgagg 2928102
>gb|AC151459.30| Medicago truncatula clone mth2-6e6, complete sequence Length = 129518 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctcaacatccacagcttcta 142 |||||||||||||||||||| Sbjct: 128206 ctcaacatccacagcttcta 128187 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctcaacatccacagcttcta 142 |||||||||||||||||||| Sbjct: 111479 ctcaacatccacagcttcta 111460
>gb|AC151727.27| Medicago truncatula clone mth2-25p23, complete sequence Length = 123526 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctcaacatccacagcttcta 142 |||||||||||||||||||| Sbjct: 85861 ctcaacatccacagcttcta 85842 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ctcaacatccacagcttcta 142 |||||||||||||||||||| Sbjct: 79212 ctcaacatccacagcttcta 79193
>gb|AC169120.12| Medicago truncatula clone mth2-84o2, complete sequence Length = 118165 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctcaacatccacagcttcta 142 |||||||||||||||||||| Sbjct: 115691 ctcaacatccacagcttcta 115710 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ctcaacatccacagcttcta 142 |||||||||||||||||||| Sbjct: 109042 ctcaacatccacagcttcta 109061
>gb|AC087333.2|AC087333 Takifugu rubripes clone 244C11, complete sequence Length = 78437 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 375 gggctcgccgtctttctcttcttgcctg 402 ||||||||||||| ||||||| |||||| Sbjct: 67555 gggctcgccgtctctctcttcctgcctg 67528
>gb|AC009035.9| Homo sapiens chromosome 16 clone RP11-142A12, complete sequence Length = 132296 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 agagcaagagggggctgatc 251 |||||||||||||||||||| Sbjct: 107307 agagcaagagggggctgatc 107326
>gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, complete sequence Length = 135347 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 agagcaagagggggctgatc 251 |||||||||||||||||||| Sbjct: 120660 agagcaagagggggctgatc 120641
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 cgcgctggtcgggctcgccg 384 |||||||||||||||||||| Sbjct: 237678 cgcgctggtcgggctcgccg 237659
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tccagatgatcgccggcctg 176 |||||||||||||||||||| Sbjct: 2213979 tccagatgatcgccggcctg 2213998
>emb|AJ490471.1|OSA490471 Oryza sativa z205a snoRNA Length = 149 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cgccgtcgtcggcaattggt 225 |||||||||||||||||||| Sbjct: 50 cgccgtcgtcggcaattggt 31 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,099,300 Number of Sequences: 3902068 Number of extensions: 3099300 Number of successful extensions: 61551 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60931 Number of HSP's gapped (non-prelim): 616 length of query: 458 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 436 effective length of database: 17,147,199,772 effective search space: 7476179100592 effective search space used: 7476179100592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
