>COL1_ARATH (O50055) Zinc finger protein CONSTANS-LIKE 1|
          Length = 355

 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 19/42 (45%), Positives = 21/42 (50%)
 Frame = +3

Query: 198 QRCDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           Q CD+CRSA C  Y               VH+AN LASRH R
Sbjct: 10  QACDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHER 51



 Score = 37.0 bits (84), Expect = 0.019
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 204 CDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           C SC  AP AF+               +HSAN LA RH+R
Sbjct: 55  CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94

>CONS_ARATH (Q39057) Zinc finger protein CONSTANS|
          Length = 373

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 174 GVGGMQLQQRCDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           G G     + CD+CRS  C  Y               VHSAN +ASRH+R
Sbjct: 10  GSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKR 59



 Score = 36.2 bits (82), Expect = 0.033
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 204 CDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           C+SC  AP AF                VHSAN LA RH+R
Sbjct: 63  CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102

>COL2_ARATH (Q96502) Zinc finger protein CONSTANS-LIKE 2|
          Length = 347

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 204 CDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           CD+CRSA C  Y               VH+AN +ASRH R
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHER 55



 Score = 37.4 bits (85), Expect = 0.015
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 204 CDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           C SC SAP AF                +HSAN LA RH+R
Sbjct: 59  CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98

>COL4_ARATH (Q940T9) Zinc finger protein CONSTANS-LIKE 4|
          Length = 362

 Score = 37.0 bits (84), Expect = 0.019
 Identities = 18/40 (45%), Positives = 20/40 (50%)
 Frame = +3

Query: 204 CDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           CDSC+SA  A Y               VH+AN LASRH R
Sbjct: 6   CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHAR 45

>COL16_ARATH (Q8RWD0) Zinc finger protein CONSTANS-LIKE 16|
          Length = 417

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 17/55 (30%), Positives = 22/55 (40%)
 Frame = +3

Query: 159 LRGSAGVGGMQLQQRCDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           ++  A   G +  + CDSC      +Y               VHSAN LA RH R
Sbjct: 2   MKSLANAVGAKTARACDSCVKRRARWYCAADDAFLCQSCDSLVHSANPLARRHER 56

>COL5_ARATH (Q9FHH8) Zinc finger protein CONSTANS-LIKE 5|
          Length = 355

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 204 CDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           C+ C  AP A                 +HSAN LASRH R
Sbjct: 61  CEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHER 100

>COL3_ARATH (Q9SK53) Zinc finger protein CONSTANS-LIKE 3|
          Length = 294

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 204 CDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           CDSC+S     +               +H+AN LASRH R
Sbjct: 8   CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHER 47

>COL6_ARATH (Q8LG76) Zinc finger protein CONSTANS-LIKE 6|
          Length = 406

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 168 SAGVGGMQLQQRCDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           ++ VGG +  + CDSC      +Y               VHSAN LA RH R
Sbjct: 6   ASAVGG-KTARACDSCVKRRARWYCAADDAFLCHACDGSVHSANPLARRHER 56

>STH_ARATH (Q9SID1) Salt tolerance-like protein|
          Length = 238

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 201 RCDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           +CD C  AP                   VH+AN LAS+H+R
Sbjct: 4   QCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQR 44

>MENF_ECOLI (P38051) Menaquinone-specific isochorismate synthase (EC 5.4.4.2)|
           (Isochorismate mutase)
          Length = 431

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 78  PACAAGELDRSTSRPAMIKAEPDLRGQLRGSAGVGGMQLQQRCDSCRSA 224
           P  A   L R  +R  + + EP  R    GSAG   +Q  + C S RSA
Sbjct: 341 PTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSA 389

>COL11_ARATH (O23379) Putative zinc finger protein CONSTANS-LIKE 11|
          Length = 330

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = +3

Query: 192 LQQRCDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           ++ RCD C +     Y               VHSAN L+ RH R
Sbjct: 1   MEARCDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTR 44

>STO_ARATH (Q96288) Salt-tolerance protein|
          Length = 248

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 201 RCDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           +CD C  AP                   +H+AN LAS+H+R
Sbjct: 4   QCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQR 44

>FOXD1_HUMAN (Q16676) Forkhead box protein D1 (Forkhead-related protein FKHL8)|
           (Forkhead-related transcription factor 4) (FREAC-4)
          Length = 465

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = -3

Query: 150 GGPARP*SSPVARSIGPVHPPHRRAI------YTLILYPHSPPSALSRAAKKAGA 4
           GG   P ++       P  PPH          Y L L P++PPSAL  AA  A A
Sbjct: 246 GGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGYGLQLPPYAPPSALFAAAAAAAA 300

>COMA_NEIGO (P51973) Competence protein comA|
          Length = 691

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -2

Query: 208 SQRCCSCMPPTPALPRSWPRRSGSA-----LIIAGREVDRSSSPAAQAGYIYAY 62
           ++R  +C P  PA PR+W   +G A      ++AG  V    S    A + +A+
Sbjct: 203 AKRLLACSPRLPARPRAWVLAAGCAGALFYALLAGFSVPTQRSVLMLAAFAWAW 256

>RDRP_BYDVR (P29045) Putative RNA-directed RNA polymerase (EC 2.7.7.48)|
           [Contains: 39 kDa protein]
          Length = 867

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 98  FTRRTGGLYIRLSCTPTHLRRLYHAQQRRLER 3
           FT+  GG+Y  LSC PT  R+   A+  +LE+
Sbjct: 105 FTKSRGGVYAPLSCEPT--RQELEAKSEKLEK 134

>RDRP_BYDVP (P09505) Putative RNA-directed RNA polymerase (EC 2.7.7.48)|
           [Contains: 39 kDa protein]
          Length = 867

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 98  FTRRTGGLYIRLSCTPTHLRRLYHAQQRRLER 3
           FT+  GG+Y  LSC PT  R+    +  +LER
Sbjct: 105 FTKSRGGVYAPLSCEPT--RQELEVKSEKLER 134

>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 217 RHESQRCCSCMPPTP--ALPRSWPRRSGSALIIAGR 116
           R   +RC SC PP P  A P   PRR+  A    GR
Sbjct: 22  RPAPRRCGSCRPPPPGSASPSPRPRRASCATGCCGR 57

>COL7_ARATH (Q9C9A9) Putative zinc finger protein CONSTANS-LIKE 7|
          Length = 392

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 168 SAGVGGMQLQQR-CDSC-RSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           +A V G ++  R CD+C + +  ++Y               +HSAN LA RH R
Sbjct: 9   TASVTGEKMAARGCDACMKRSRASWYCPADDAFLCQSCDASIHSANHLAKRHER 62

>COL12_ARATH (Q9LJ44) Putative zinc finger protein CONSTANS-LIKE 12|
          Length = 337

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 192 LQQRCDSCRSAPCAFYXXXXXXXXXXXXXXXVHSANTLASRHRR 323
           ++ +CD C ++    Y               VHSAN L+ RH R
Sbjct: 1   MEPKCDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIR 44

>RAD18_ASPFU (Q4WZJ6) Postreplication repair ubiquitin-protein ligase E3 rad18|
           (EC 6.-.-.-)
          Length = 418

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 169 LPRSWPRRSGSALIIAGREVDRSSSPAAQAGYIYAYPVPPLTSVGSITRSKEG 11
           +P++ P R G++   A  +    S+P   A  +    VP  TSV +I  ++ G
Sbjct: 350 IPQAAPARDGTSTASAPEQSTEMSTPPEVAERLQTQTVPEGTSVATIAENETG 402

>RS10_CHLTR (P0A4A1) 30S ribosomal protein S10|
          Length = 105

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 117 ARSIGPVHPPHRRAIYTLILYPH 49
           AR +GP+  P +R +YT++  PH
Sbjct: 36  ARVVGPIPLPTKREVYTVLRSPH 58

>RS10_CHLPN (Q9Z803) 30S ribosomal protein S10|
          Length = 105

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 117 ARSIGPVHPPHRRAIYTLILYPH 49
           AR +GP+  P +R +YT++  PH
Sbjct: 36  ARVVGPIPLPTKREVYTVLRSPH 58

>RS10_CHLMU (P0A4A2) 30S ribosomal protein S10|
          Length = 105

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 117 ARSIGPVHPPHRRAIYTLILYPH 49
           AR +GP+  P +R +YT++  PH
Sbjct: 36  ARVVGPIPLPTKREVYTVLRSPH 58

>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1006

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -2

Query: 190 CMPPTP--ALPRSWPRRSGSALIIAGREVDRSSSPAAQAGYIYAYPVPPLTSVGSITRSK 17
           C+PP P  ALPR   + +G           R  SP  QA      P P  TS  + T S 
Sbjct: 361 CVPPAPDMALPRLGTQSTGPG---------RCLSPNLQA---QEAPAPVTTSSSTSTLSS 408

Query: 16  EGWSA 2
             WSA
Sbjct: 409 SPWSA 413


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,959,095
Number of Sequences: 219361
Number of extensions: 476553
Number of successful extensions: 2055
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2054
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)