ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet02f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478758.1| Oryza sativa (japonica cultivar-group), mRNA 186 4e-44
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
3dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
4dbj|AK120160.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 4e-44
5gb|AY104703.1| Zea mays PCO143772 mRNA sequence 78 3e-11
6ref|XM_470042.1| Oryza sativa (japonica cultivar-group), mRNA 70 7e-09
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 7e-09
8gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genom... 70 7e-09
9gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 70 7e-09
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
11dbj|AK109389.2| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
12gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
13emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.38
14emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 44 0.38
15emb|BX640413.1| Bordetella pertussis strain Tohama I, complete g... 44 0.38
16dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
17gb|AE010327.1| Methanopyrus kandleri AV19 section 26 of 157 of t... 42 1.5
18gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 1.5
19gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 42 1.5
20ref|XM_654921.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.5
21ref|XM_813258.1| Trypanosoma cruzi strain CL Brener dispersed ge... 42 1.5
22ref|XM_814436.1| Trypanosoma cruzi strain CL Brener dispersed ge... 42 1.5
23emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete ... 42 1.5
24gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 42 1.5
25emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 42 1.5
26ref|NM_186369.2| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
27ref|XM_506414.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.9
28ref|XM_477094.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.9
29gb|BT017891.1| Zea mays clone EL01N0515A03.c mRNA sequence 40 5.9
30gb|BC074705.1| Xenopus tropicalis phosphatidylinositol-4-phospha... 40 5.9
31gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 5.9
32gb|L04961.1|MUSXISTA Mouse nuclear-localized inactive X-specific... 40 5.9
33ref|NR_001463.2| Mus musculus inactive X specific transcripts (X... 40 5.9
34emb|AL353804.22| Human DNA sequence from clone RP13-216E22 on ch... 40 5.9
35emb|BX059260.1|CNS09HW0 Single read from an extremity of a full-... 40 5.9
36emb|BX030658.1|CNS08VTI Single read from an extremity of a full-... 40 5.9
37emb|BX029342.1|CNS08USY Single read from an extremity of a full-... 40 5.9
38emb|BX024651.1|CNS08R6N Single read from an extremity of a full-... 40 5.9
39emb|BX024057.1|CNS08QQ5 Single read from an extremity of a full-... 40 5.9
40emb|BX019846.1|CNS08NH6 Single read from an extremity of a full-... 40 5.9
41emb|BX011165.1|CNS08GS1 Single read from an extremity of a full-... 40 5.9
42ref|NM_001005670.1| Xenopus tropicalis phosphatidylinositol-4-ph... 40 5.9
43emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ... 40 5.9
44emb|BX648323.1|HSM808471 Homo sapiens mRNA; cDNA DKFZp686K10163 ... 40 5.9
45gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.9
46emb|CR749383.1| Homo sapiens mRNA; cDNA DKFZp779P0129 (from clon... 40 5.9
47emb|CR596835.1| full-length cDNA clone CS0DF020YG22 of Fetal bra... 40 5.9
48gb|M97168.1|HUMXIST Homo sapiens X (inactive)-specific transcrip... 40 5.9
49gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 5.9
50gb|AC087333.2|AC087333 Takifugu rubripes clone 244C11, complete ... 40 5.9
51gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.9
52ref|NR_001564.1| Homo sapiens X (inactive)-specific transcript (... 40 5.9
53ref|NR_001464.1| Bos taurus X (inactive)-specific transcript (XI... 40 5.9
54dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
55gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.9
56dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
57dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
58dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
59ref|XM_319655.2| Anopheles gambiae str. PEST ENSANGP00000013885 ... 40 5.9
60dbj|AK072783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
61dbj|AK069485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
62emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 5.9
63dbj|AK067003.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
64emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 i... 40 5.9
65emb|CR762295.2| Xenopus tropicalis finished cDNA, clone TGas097l11 40 5.9
66dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 40 5.9
67gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.9
68gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
69emb|AL772421.5|CNS08C9Z Oryza sativa chromosome 12, . BAC OJ1007... 40 5.9
70gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, par... 40 5.9
71gb|U41394.1|MMMB414A1 Mus musculus X inactivation transcript (Xi... 40 5.9
72emb|AJ421479.1| Mus musculus X-inactivation center region; segme... 40 5.9
73emb|X59289.1|MMSIST Mouse Xist (X inactive specific transcript) ... 40 5.9
74emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chr... 40 5.9
75emb|AJ421481.1| Bos taurus X-inactivation center region, Jpx and... 40 5.9
76emb|X56199.1|HSXISTA Human XIST, coding sequence "a" mRNA (locus... 40 5.9
77emb|AJ429140.1|SSC429140 Sus scrofa partial Xist gene for X inac... 40 5.9 
>ref|XM_478758.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 951

 Score =  186 bits (94), Expect = 4e-44
 Identities = 112/118 (94%)
 Strand = Plus / Plus

                                                                       
Query: 168 ggggagcagacacacgtcgatccgctccgtcgggagcgacaccgcccccagcgagctctt 227
           ||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 267 ggggagcaggcacacgtcgatccgctccgtggggagcgacaccgccccaagtgagctctt 326

                                                                     
Query: 228 ccctactatgagcagggagttctcggccatggtcgccgcagcagccagcgctaacgcc 285
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 327 ccctactatgagcagggagttctcggccatggtcgccgcagcagccaacgccaacgcc 384



 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Plus

                                                                       
Query: 331 gacgcactggggaggatcggcgaggaggagctggaggagacgaacccgctcgccatcgtg 390
           ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 436 gacgcgctggggaggatcggggaggatgagctcgaggagacgaacccgctcgccatcgtc 495

                                           
Query: 391 ccggacagcaaccccatcccgtcgccgcgccg 422
           ||||||||||||||||||||||| || |||||
Sbjct: 496 ccggacagcaaccccatcccgtcccctcgccg 527



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 64  gagttcagggacatccacgcgctgagcccaccgc 97
           ||||||||||||||||||||||||||||| ||||
Sbjct: 163 gagttcagggacatccacgcgctgagcccgccgc 196
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  186 bits (94), Expect = 4e-44
 Identities = 112/118 (94%)
 Strand = Plus / Minus

                                                                            
Query: 168      ggggagcagacacacgtcgatccgctccgtcgggagcgacaccgcccccagcgagctctt 227
                ||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 22836947 ggggagcaggcacacgtcgatccgctccgtggggagcgacaccgccccaagtgagctctt 22836888

                                                                          
Query: 228      ccctactatgagcagggagttctcggccatggtcgccgcagcagccagcgctaacgcc 285
                ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 22836887 ccctactatgagcagggagttctcggccatggtcgccgcagcagccaacgccaacgcc 22836830



 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                            
Query: 331      gacgcactggggaggatcggcgaggaggagctggaggagacgaacccgctcgccatcgtg 390
                ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 22836778 gacgcgctggggaggatcggggaggatgagctcgaggagacgaacccgctcgccatcgtc 22836719

                                                
Query: 391      ccggacagcaaccccatcccgtcgccgcgccg 422
                ||||||||||||||||||||||| || |||||
Sbjct: 22836718 ccggacagcaaccccatcccgtcccctcgccg 22836687



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 64       gagttcagggacatccacgcgctgagcccaccgc 97
                ||||||||||||||||||||||||||||| ||||
Sbjct: 22837051 gagttcagggacatccacgcgctgagcccgccgc 22837018



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 350      gcgaggaggagctggaggag 369
                ||||||||||||||||||||
Sbjct: 22768344 gcgaggaggagctggaggag 22768325



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 371     cgaacccgctcgccatcgtgccgg 394
               ||||| ||||||||||||||||||
Sbjct: 5897358 cgaacgcgctcgccatcgtgccgg 5897381
to top
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score =  186 bits (94), Expect = 4e-44
 Identities = 112/118 (94%)
 Strand = Plus / Minus

                                                                         
Query: 168   ggggagcagacacacgtcgatccgctccgtcgggagcgacaccgcccccagcgagctctt 227
             ||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 30214 ggggagcaggcacacgtcgatccgctccgtggggagcgacaccgccccaagtgagctctt 30155

                                                                       
Query: 228   ccctactatgagcagggagttctcggccatggtcgccgcagcagccagcgctaacgcc 285
             ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 30154 ccctactatgagcagggagttctcggccatggtcgccgcagcagccaacgccaacgcc 30097



 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Minus

                                                                         
Query: 331   gacgcactggggaggatcggcgaggaggagctggaggagacgaacccgctcgccatcgtg 390
             ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 30045 gacgcgctggggaggatcggggaggatgagctcgaggagacgaacccgctcgccatcgtc 29986

                                             
Query: 391   ccggacagcaaccccatcccgtcgccgcgccg 422
             ||||||||||||||||||||||| || |||||
Sbjct: 29985 ccggacagcaaccccatcccgtcccctcgccg 29954



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 64    gagttcagggacatccacgcgctgagcccaccgc 97
             ||||||||||||||||||||||||||||| ||||
Sbjct: 30318 gagttcagggacatccacgcgctgagcccgccgc 30285
to top
>dbj|AK120160.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030P03, full
           insert sequence
          Length = 1528

 Score =  186 bits (94), Expect = 4e-44
 Identities = 112/118 (94%)
 Strand = Plus / Plus

                                                                       
Query: 168 ggggagcagacacacgtcgatccgctccgtcgggagcgacaccgcccccagcgagctctt 227
           ||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 415 ggggagcaggcacacgtcgatccgctccgtggggagcgacaccgccccaagtgagctctt 474

                                                                     
Query: 228 ccctactatgagcagggagttctcggccatggtcgccgcagcagccagcgctaacgcc 285
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 475 ccctactatgagcagggagttctcggccatggtcgccgcagcagccaacgccaacgcc 532



 Score =  127 bits (64), Expect = 3e-26
 Identities = 85/92 (92%)
 Strand = Plus / Plus

                                                                       
Query: 331 gacgcactggggaggatcggcgaggaggagctggaggagacgaacccgctcgccatcgtg 390
           ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| 
Sbjct: 584 gacgcgctggggaggatcggggaggatgagctcgaggagacgaacccgctcgccatcgtc 643

                                           
Query: 391 ccggacagcaaccccatcccgtcgccgcgccg 422
           ||||||||||||||||||||||| || |||||
Sbjct: 644 ccggacagcaaccccatcccgtcccctcgccg 675



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                             
Query: 64  gagttcagggacatccacgcgctgagcccaccgc 97
           ||||||||||||||||||||||||||||| ||||
Sbjct: 311 gagttcagggacatccacgcgctgagcccgccgc 344
to top
>gb|AY104703.1| Zea mays PCO143772 mRNA sequence
          Length = 659

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 346 atcggcgaggaggagctggaggagacgaacccgctcgccatcgtgccggacagcaacccc 405
           ||||||||||| |||||||||||||| |||||||| |||||||| || |||||| |||||
Sbjct: 42  atcggcgaggacgagctggaggagaccaacccgctggccatcgtccccgacagccacccc 101

              
Query: 406 atc 408
           |||
Sbjct: 102 atc 104
to top
>ref|XM_470042.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1287

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 346 atcggcgaggaggagctggaggagacgaacccgctcgccatcgtgccggacagcaaccc 404
           ||||||||||| |||||||||||||| |||||||| || || |||||||||||| ||||
Sbjct: 463 atcggcgaggacgagctggaggagaccaacccgctggcaattgtgccggacagccaccc 521



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 235 atgagcagggagttctcggccatggtcgccgc 266
           |||||| |||||||| ||||||||||||||||
Sbjct: 370 atgagccgggagttcacggccatggtcgccgc 401
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 346      atcggcgaggaggagctggaggagacgaacccgctcgccatcgtgccggacagcaaccc 404
                ||||||||||| |||||||||||||| |||||||| || || |||||||||||| ||||
Sbjct: 33488386 atcggcgaggacgagctggaggagaccaacccgctggcaattgtgccggacagccaccc 33488328



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 235      atgagcagggagttctcggccatggtcgccgc 266
                |||||| |||||||| ||||||||||||||||
Sbjct: 33488479 atgagccgggagttcacggccatggtcgccgc 33488448
to top
>gb|AC145384.2| Oryza sativa chromosome 3 BAC OSJNBa0060M17 genomic sequence, complete
             sequence
          Length = 41693

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 346   atcggcgaggaggagctggaggagacgaacccgctcgccatcgtgccggacagcaaccc 404
             ||||||||||| |||||||||||||| |||||||| || || |||||||||||| ||||
Sbjct: 17575 atcggcgaggacgagctggaggagaccaacccgctggcaattgtgccggacagccaccc 17517



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 235   atgagcagggagttctcggccatggtcgccgc 266
             |||||| |||||||| ||||||||||||||||
Sbjct: 17668 atgagccgggagttcacggccatggtcgccgc 17637
to top
>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence,
            complete sequence
          Length = 154555

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                       
Query: 346  atcggcgaggaggagctggaggagacgaacccgctcgccatcgtgccggacagcaaccc 404
            ||||||||||| |||||||||||||| |||||||| || || |||||||||||| ||||
Sbjct: 9763 atcggcgaggacgagctggaggagaccaacccgctggcaattgtgccggacagccaccc 9821



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 235  atgagcagggagttctcggccatggtcgccgc 266
            |||||| |||||||| ||||||||||||||||
Sbjct: 9670 atgagccgggagttcacggccatggtcgccgc 9701
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 346      atcggcgaggaggagctggaggagacgaacccgctcgccatcgtgccggacagcaaccc 404
                ||||||||||| |||||||||||||| |||||||| || || |||||||||||| ||||
Sbjct: 33578858 atcggcgaggacgagctggaggagaccaacccgctggcaattgtgccggacagccaccc 33578800



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 235      atgagcagggagttctcggccatggtcgccgc 266
                |||||| |||||||| ||||||||||||||||
Sbjct: 33578951 atgagccgggagttcacggccatggtcgccgc 33578920
to top
>dbj|AK109389.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F02, full
           insert sequence
          Length = 1234

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 346 atcggcgaggaggagctggaggagacgaacccgctcgccatcgtgccggacagcaaccc 404
           ||||||||||| |||||||||||||| |||||||| || || |||||||||||| ||||
Sbjct: 462 atcggcgaggacgagctggaggagaccaacccgctggcaattgtgccggacagccaccc 520



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 235 atgagcagggagttctcggccatggtcgccgc 266
           |||||| |||||||| ||||||||||||||||
Sbjct: 369 atgagccgggagttcacggccatggtcgccgc 400
to top
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009C07, complete sequence
          Length = 148731

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1     ggccgcggcgtcgagcagcagc 22
             ||||||||||||||||||||||
Sbjct: 67310 ggccgcggcgtcgagcagcagc 67289
to top
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 5      gcggcgtcgagcagcagcaccagcgt 30
              ||||||||||||||||||||| ||||
Sbjct: 235443 gcggcgtcgagcagcagcacctgcgt 235468
to top
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 5      gcggcgtcgagcagcagcaccagcgt 30
              ||||||||||||||||||||| ||||
Sbjct: 173173 gcggcgtcgagcagcagcacctgcgt 173198
to top
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 5      gcggcgtcgagcagcagcaccagcgt 30
              ||||||||||||||||||||| ||||
Sbjct: 182119 gcggcgtcgagcagcagcacctgcgt 182094
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 1        ggccgcggcgtcgagcagcagc 22
                ||||||||||||||||||||||
Sbjct: 28913017 ggccgcggcgtcgagcagcagc 28912996
to top
>gb|AE010327.1| Methanopyrus kandleri AV19 section 26 of 157 of the complete genome
          Length = 10375

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 339  ggggaggatcggcgaggaggagctg 363
            ||||| |||||||||||||||||||
Sbjct: 6414 ggggatgatcggcgaggaggagctg 6390
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    cgccggagccggccgggcagc 135
              |||||||||||||||||||||
Sbjct: 409580 cgccggagccggccgggcagc 409600
to top
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 132    cagcagggactcgtgggggtc 152
              |||||||||||||||||||||
Sbjct: 752846 cagcagggactcgtgggggtc 752866
to top
>ref|XM_654921.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2409.2), mRNA
          Length = 2115

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 353  aggaggagctggaggagacga 373
            |||||||||||||||||||||
Sbjct: 1961 aggaggagctggaggagacga 1981
to top
>ref|XM_813258.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
           (DGF-1) (Tc00.1047053510465.10) partial mRNA
          Length = 10440

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 261 cgccgcagcagccagcgctaacgcc 285
           |||||||||||||||||| ||||||
Sbjct: 174 cgccgcagcagccagcgccaacgcc 150
to top
>ref|XM_814436.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1
           (DGF-1) (Tc00.1047053510625.10) partial mRNA
          Length = 10446

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 261 cgccgcagcagccagcgctaacgcc 285
           |||||||||||||||||| ||||||
Sbjct: 174 cgccgcagcagccagcgccaacgcc 150
to top
>emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete genome; segment 3/10
          Length = 312050

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 8      gcgtcgagcagcagcaccagc 28
              |||||||||||||||||||||
Sbjct: 285608 gcgtcgagcagcagcaccagc 285588
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      cgtcgagcagcagcaccagcg 29
              |||||||||||||||||||||
Sbjct: 128986 cgtcgagcagcagcaccagcg 129006
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 10      gtcgagcagcagcaccagcgtcggc 34
               |||||||||||||||||||| ||||
Sbjct: 1568292 gtcgagcagcagcaccagcggcggc 1568316
to top
>ref|NM_186369.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2530

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gcgaggaggagctggaggag 369
           ||||||||||||||||||||
Sbjct: 110 gcgaggaggagctggaggag 129
to top
>ref|XM_506414.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1092_A07.123
           mRNA
          Length = 2674

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gcgaggaggagctggaggag 369
           ||||||||||||||||||||
Sbjct: 254 gcgaggaggagctggaggag 273
to top
>ref|XM_477094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 982

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 371 cgaacccgctcgccatcgtgccgg 394
           ||||| ||||||||||||||||||
Sbjct: 471 cgaacgcgctcgccatcgtgccgg 494
to top
>gb|BT017891.1| Zea mays clone EL01N0515A03.c mRNA sequence
          Length = 700

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 12 cgagcagcagcaccagcgtc 31
          ||||||||||||||||||||
Sbjct: 86 cgagcagcagcaccagcgtc 67
to top
>gb|BC074705.1| Xenopus tropicalis phosphatidylinositol-4-phosphate 5-kinase, type
           II, gamma, mRNA (cDNA clone MGC:69336 IMAGE:5309026),
           complete cds
          Length = 1839

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 cgcctcgtcctccgcggcag 301
           ||||||||||||||||||||
Sbjct: 130 cgcctcgtcctccgcggcag 149
to top
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 15      gcagcagcaccagcgtcggc 34
               ||||||||||||||||||||
Sbjct: 5827874 gcagcagcaccagcgtcggc 5827855



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     gtcgagcagcagcaccagcg 29
              ||||||||||||||||||||
Sbjct: 403250 gtcgagcagcagcaccagcg 403231
to top
>gb|L04961.1|MUSXISTA Mouse nuclear-localized inactive X-specific transcript (Xist) mRNA
          Length = 14739

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ctactatgagcagggagttc 249
             ||||||||||||||||||||
Sbjct: 12611 ctactatgagcagggagttc 12592
to top
>ref|NR_001463.2| Mus musculus inactive X specific transcripts (Xist) on chromosome X
          Length = 17919

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ctactatgagcagggagttc 249
             ||||||||||||||||||||
Sbjct: 12649 ctactatgagcagggagttc 12630
to top
>emb|AL353804.22| Human DNA sequence from clone RP13-216E22 on chromosome Xq13.1-21.1
            Note the TSIX gene (see AmJHumGenet 69, 951) is known to
            overlap the XIST locus however this transcript has not
            been submitted to the databases and therefore it is not
            possible at this stage to annotate the locus, complete
            sequence
          Length = 167668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 230  ctactatgagcagggagttc 249
            ||||||||||||||||||||
Sbjct: 9406 ctactatgagcagggagttc 9425
to top
>emb|BX059260.1|CNS09HW0 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC4AA11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 997

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  gcagcagcaccagcgtcggc 34
           ||||||||||||||||||||
Sbjct: 615 gcagcagcaccagcgtcggc 596
to top
>emb|BX030658.1|CNS08VTI Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA45DC03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 765

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  gcagcagcaccagcgtcggc 34
           ||||||||||||||||||||
Sbjct: 603 gcagcagcaccagcgtcggc 584
to top
>emb|BX029342.1|CNS08USY Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA43DD07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 961

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  gcagcagcaccagcgtcggc 34
           ||||||||||||||||||||
Sbjct: 635 gcagcagcaccagcgtcggc 616
to top
>emb|BX024651.1|CNS08R6N Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA37CH01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 898

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  gcagcagcaccagcgtcggc 34
           ||||||||||||||||||||
Sbjct: 575 gcagcagcaccagcgtcggc 556
to top
>emb|BX024057.1|CNS08QQ5 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA36CH03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 745

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  gcagcagcaccagcgtcggc 34
           ||||||||||||||||||||
Sbjct: 604 gcagcagcaccagcgtcggc 585
to top
>emb|BX019846.1|CNS08NH6 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA3BB01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 945

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  gcagcagcaccagcgtcggc 34
           ||||||||||||||||||||
Sbjct: 600 gcagcagcaccagcgtcggc 581
to top
>emb|BX011165.1|CNS08GS1 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA17DD04 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 939

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  gcagcagcaccagcgtcggc 34
           ||||||||||||||||||||
Sbjct: 627 gcagcagcaccagcgtcggc 608
to top
>ref|NM_001005670.1| Xenopus tropicalis phosphatidylinositol-4-phosphate 5-kinase, type
           II, gamma (pip5k2c), mRNA
          Length = 1839

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 cgcctcgtcctccgcggcag 301
           ||||||||||||||||||||
Sbjct: 130 cgcctcgtcctccgcggcag 149
to top
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    cggggagagcgtggcgaacg 328
              ||||||||||||||||||||
Sbjct: 212402 cggggagagcgtggcgaacg 212383
to top
>emb|BX648323.1|HSM808471 Homo sapiens mRNA; cDNA DKFZp686K10163 (from clone DKFZp686K10163)
          Length = 5106

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ctactatgagcagggagttc 249
            ||||||||||||||||||||
Sbjct: 4533 ctactatgagcagggagttc 4514
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 4       cgcggcgtcgagcagcagcaccagcgtc 31
               |||||||||||||||| || ||||||||
Sbjct: 5402893 cgcggcgtcgagcagcggcgccagcgtc 5402866
to top
>emb|CR749383.1| Homo sapiens mRNA; cDNA DKFZp779P0129 (from clone DKFZp779P0129)
          Length = 4890

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ctactatgagcagggagttc 249
            ||||||||||||||||||||
Sbjct: 2207 ctactatgagcagggagttc 2188
to top
>emb|CR596835.1| full-length cDNA clone CS0DF020YG22 of Fetal brain of Homo sapiens
            (human)
          Length = 2353

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ctactatgagcagggagttc 249
            ||||||||||||||||||||
Sbjct: 1668 ctactatgagcagggagttc 1649
to top
>gb|M97168.1|HUMXIST Homo sapiens X (inactive)-specific transcript (XIST) complete exon
          Length = 16481

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ctactatgagcagggagttc 249
             ||||||||||||||||||||
Sbjct: 13921 ctactatgagcagggagttc 13902
to top
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 14      agcagcagcaccagcgtcgg 33
               ||||||||||||||||||||
Sbjct: 3557374 agcagcagcaccagcgtcgg 3557393
to top
>gb|AC087333.2|AC087333 Takifugu rubripes clone 244C11, complete sequence
          Length = 78437

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   cgaggaggagctggaggaga 370
             ||||||||||||||||||||
Sbjct: 78295 cgaggaggagctggaggaga 78276
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 5       gcggcgtcgagcagcagcaccagc 28
               |||||| |||||||||||||||||
Sbjct: 2767350 gcggcgacgagcagcagcaccagc 2767327
to top
>ref|NR_001564.1| Homo sapiens X (inactive)-specific transcript (XIST) on chromosome X
          Length = 19271

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ctactatgagcagggagttc 249
             ||||||||||||||||||||
Sbjct: 13928 ctactatgagcagggagttc 13909
to top
>ref|NR_001464.1| Bos taurus X (inactive)-specific transcript (XIST) on chromosome X
          Length = 34635

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ctactatgagcagggagttc 249
             ||||||||||||||||||||
Sbjct: 29266 ctactatgagcagggagttc 29247
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 403      cccatcccgtcgccgcgccg 422
                ||||||||||||||||||||
Sbjct: 10520986 cccatcccgtcgccgcgccg 10520967
to top
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 2       gccgcggcgtcgagcagcag 21
               ||||||||||||||||||||
Sbjct: 1250565 gccgcggcgtcgagcagcag 1250584
to top
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 371   cgaacccgctcgccatcgtgccgg 394
             ||||| ||||||||||||||||||
Sbjct: 39806 cgaacgcgctcgccatcgtgccgg 39829
to top
>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1092_A07
          Length = 137081

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   gcgaggaggagctggaggag 369
             ||||||||||||||||||||
Sbjct: 87686 gcgaggaggagctggaggag 87667
to top
>dbj|AP003837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1559_F09
          Length = 87792

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 371   cgaacccgctcgccatcgtgccgg 394
             ||||| ||||||||||||||||||
Sbjct: 72032 cgaacgcgctcgccatcgtgccgg 72055
to top
>ref|XM_319655.2| Anopheles gambiae str. PEST ENSANGP00000013885
           (ENSANGG00000011396), mRNA
          Length = 1664

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  gcagcagcaccagcgtcggc 34
           ||||||||||||||||||||
Sbjct: 634 gcagcagcaccagcgtcggc 615
to top
>dbj|AK072783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140L20, full
           insert sequence
          Length = 2674

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gcgaggaggagctggaggag 369
           ||||||||||||||||||||
Sbjct: 254 gcgaggaggagctggaggag 273
to top
>dbj|AK069485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019N16, full
           insert sequence
          Length = 2530

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 gcgaggaggagctggaggag 369
           ||||||||||||||||||||
Sbjct: 110 gcgaggaggagctggaggag 129
to top
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      gccgcggcgtcgagcagcagcacc 25
              |||| |||||||||||||||||||
Sbjct: 314046 gccggggcgtcgagcagcagcacc 314069
to top
>dbj|AK067003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094N02, full
           insert sequence
          Length = 982

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 371 cgaacccgctcgccatcgtgccgg 394
           ||||| ||||||||||||||||||
Sbjct: 471 cgaacgcgctcgccatcgtgccgg 494
to top
>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19,
              complete sequence
          Length = 191582

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     tcagggacatccacgcgctg 87
              ||||||||||||||||||||
Sbjct: 187780 tcagggacatccacgcgctg 187799
to top
>emb|CR762295.2| Xenopus tropicalis finished cDNA, clone TGas097l11
          Length = 1765

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 cgcctcgtcctccgcggcag 301
           ||||||||||||||||||||
Sbjct: 70  cgcctcgtcctccgcggcag 89
to top
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     gccgcggcgtcgagcagcagcacc 25
             |||||| |||||||||||||||||
Sbjct: 29906 gccgcgtcgtcgagcagcagcacc 29929
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 5       gcggcgtcgagcagcagcac 24
               ||||||||||||||||||||
Sbjct: 2985431 gcggcgtcgagcagcagcac 2985450
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 403      cccatcccgtcgccgcgccg 422
                ||||||||||||||||||||
Sbjct: 10520868 cccatcccgtcgccgcgccg 10520849
to top
>emb|AL772421.5|CNS08C9Z Oryza sativa chromosome 12, . BAC OJ1007_A12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130672

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   cccatcccgtcgccgcgccg 422
             ||||||||||||||||||||
Sbjct: 46792 cccatcccgtcgccgcgccg 46773
to top
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome
          Length = 189370

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   agcgctaacgcctcgtcctc 293
             ||||||||||||||||||||
Sbjct: 50273 agcgctaacgcctcgtcctc 50254
to top
>gb|U41394.1|MMMB414A1 Mus musculus X inactivation transcript (Xist) gene, cosmid MB4-14A,
            fragment 1
          Length = 16921

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ctactatgagcagggagttc 249
            ||||||||||||||||||||
Sbjct: 8291 ctactatgagcagggagttc 8272
to top
>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3
          Length = 252150

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ctactatgagcagggagttc 249
              ||||||||||||||||||||
Sbjct: 123870 ctactatgagcagggagttc 123851
to top
>emb|X59289.1|MMSIST Mouse Xist (X inactive specific transcript) mRNA for open reading
            frame
          Length = 4057

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ctactatgagcagggagttc 249
            ||||||||||||||||||||
Sbjct: 1914 ctactatgagcagggagttc 1895
to top
>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete
              sequence
          Length = 229724

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    ctactatgagcagggagttc 249
              ||||||||||||||||||||
Sbjct: 159793 ctactatgagcagggagttc 159812
to top
>emb|AJ421481.1| Bos taurus X-inactivation center region, Jpx and Xist genes
          Length = 233345

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ctactatgagcagggagttc 249
              ||||||||||||||||||||
Sbjct: 145562 ctactatgagcagggagttc 145543
to top
>emb|X56199.1|HSXISTA Human XIST, coding sequence "a" mRNA (locus DXS399E)
          Length = 1614

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 230  ctactatgagcagggagttc 249
            ||||||||||||||||||||
Sbjct: 1240 ctactatgagcagggagttc 1221
to top
>emb|AJ429140.1|SSC429140 Sus scrofa partial Xist gene for X inactive-specific transcript
          Length = 814

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 230 ctactatgagcagggagttc 249
           ||||||||||||||||||||
Sbjct: 547 ctactatgagcagggagttc 528


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,776,408
Number of Sequences: 3902068
Number of extensions: 2776408
Number of successful extensions: 76882
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75297
Number of HSP's gapped (non-prelim): 1585
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top