ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet02e12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191560.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1440 Score = 182 bits (92), Expect = 5e-43 Identities = 208/247 (84%), Gaps = 6/247 (2%) Strand = Plus / Plus Query: 80 gacgggctctgcgtcaccggtcgtgcgacgccgccggtctactgcatcgggccgttggtc 139 ||||||||||||||| |||| ||||| |||||| ||||||||| ||||||||| | ||| Sbjct: 685 gacgggctctgcgtccccggccgtgccacgccgacggtctactccatcgggccaatcgtc 744 Query: 140 tcgggaggcggag------acaaggagcacgactgcctccggtggctgaacgcgcagccg 193 ||||| ||||| | ||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 745 tcgggtggcggtggcagcgacaaggatcacgactgcctccggtggctggacgcgcagccg 804 Query: 194 gaccagagcgtagtgttcctctccttcggcagcctgggcacattctccagtaagcagctc 253 ||| | ||||| ||||||||||| ||||| ||| |||| | |||| || ||||||||| Sbjct: 805 gacaacagcgtggtgttcctctcgttcgggagcttgggaaggttctgcaagaagcagctc 864 Query: 254 gaggagatcgcacttggtttggacaagtcgggggagaggttcctgtgggtcgtgcggagc 313 ||||||||||| |||| || | ||||||| | |||||||||| ||||||||||||||| Sbjct: 865 gaggagatcgccattggcctgcagaagtcggagaagaggttcctctgggtcgtgcggagc 924 Query: 314 ccgcgca 320 ||||||| Sbjct: 925 ccgcgca 931
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 182 bits (92), Expect = 5e-43 Identities = 208/247 (84%), Gaps = 6/247 (2%) Strand = Plus / Plus Query: 80 gacgggctctgcgtcaccggtcgtgcgacgccgccggtctactgcatcgggccgttggtc 139 ||||||||||||||| |||| ||||| |||||| ||||||||| ||||||||| | ||| Sbjct: 30641571 gacgggctctgcgtccccggccgtgccacgccgacggtctactccatcgggccaatcgtc 30641630 Query: 140 tcgggaggcggag------acaaggagcacgactgcctccggtggctgaacgcgcagccg 193 ||||| ||||| | ||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 30641631 tcgggtggcggtggcagcgacaaggatcacgactgcctccggtggctggacgcgcagccg 30641690 Query: 194 gaccagagcgtagtgttcctctccttcggcagcctgggcacattctccagtaagcagctc 253 ||| | ||||| ||||||||||| ||||| ||| |||| | |||| || ||||||||| Sbjct: 30641691 gacaacagcgtggtgttcctctcgttcgggagcttgggaaggttctgcaagaagcagctc 30641750 Query: 254 gaggagatcgcacttggtttggacaagtcgggggagaggttcctgtgggtcgtgcggagc 313 ||||||||||| |||| || | ||||||| | |||||||||| ||||||||||||||| Sbjct: 30641751 gaggagatcgccattggcctgcagaagtcggagaagaggttcctctgggtcgtgcggagc 30641810 Query: 314 ccgcgca 320 ||||||| Sbjct: 30641811 ccgcgca 30641817 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| |||||||||||| | |||||| |||||||||| |||||||||| ||||| Sbjct: 30706237 gtggctggacgcgcagccggcgcggagcgtggtgttcctctgcttcggcagcatgggc 30706180 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 291 ggttcctgtgggtcgtgcggagcccgcg 318 ||||||||||||| |||||||||||||| Sbjct: 30706121 ggttcctgtgggtggtgcggagcccgcg 30706094 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Minus Query: 291 ggttcctgtgggtcgtgcggagcccgc 317 ||||||||||||| ||||||||||||| Sbjct: 28842000 ggttcctgtgggtggtgcggagcccgc 28841974 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 cgacgccgccggtctactgcatcgg 129 |||||||||| |||||||||||||| Sbjct: 28842195 cgacgccgcccgtctactgcatcgg 28842171
>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1060H01 Length = 157987 Score = 182 bits (92), Expect = 5e-43 Identities = 208/247 (84%), Gaps = 6/247 (2%) Strand = Plus / Plus Query: 80 gacgggctctgcgtcaccggtcgtgcgacgccgccggtctactgcatcgggccgttggtc 139 ||||||||||||||| |||| ||||| |||||| ||||||||| ||||||||| | ||| Sbjct: 83848 gacgggctctgcgtccccggccgtgccacgccgacggtctactccatcgggccaatcgtc 83907 Query: 140 tcgggaggcggag------acaaggagcacgactgcctccggtggctgaacgcgcagccg 193 ||||| ||||| | ||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 83908 tcgggtggcggtggcagcgacaaggatcacgactgcctccggtggctggacgcgcagccg 83967 Query: 194 gaccagagcgtagtgttcctctccttcggcagcctgggcacattctccagtaagcagctc 253 ||| | ||||| ||||||||||| ||||| ||| |||| | |||| || ||||||||| Sbjct: 83968 gacaacagcgtggtgttcctctcgttcgggagcttgggaaggttctgcaagaagcagctc 84027 Query: 254 gaggagatcgcacttggtttggacaagtcgggggagaggttcctgtgggtcgtgcggagc 313 ||||||||||| |||| || | ||||||| | |||||||||| ||||||||||||||| Sbjct: 84028 gaggagatcgccattggcctgcagaagtcggagaagaggttcctctgggtcgtgcggagc 84087 Query: 314 ccgcgca 320 ||||||| Sbjct: 84088 ccgcgca 84094 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| |||||||||||| | |||||| |||||||||| |||||||||| ||||| Sbjct: 148514 gtggctggacgcgcagccggcgcggagcgtggtgttcctctgcttcggcagcatgggc 148457 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 291 ggttcctgtgggtcgtgcggagcccgcg 318 ||||||||||||| |||||||||||||| Sbjct: 148398 ggttcctgtgggtggtgcggagcccgcg 148371
>dbj|AK119562.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-B10, full insert sequence Length = 1817 Score = 182 bits (92), Expect = 5e-43 Identities = 208/247 (84%), Gaps = 6/247 (2%) Strand = Plus / Plus Query: 80 gacgggctctgcgtcaccggtcgtgcgacgccgccggtctactgcatcgggccgttggtc 139 ||||||||||||||| |||| ||||| |||||| ||||||||| ||||||||| | ||| Sbjct: 801 gacgggctctgcgtccccggccgtgccacgccgacggtctactccatcgggccaatcgtc 860 Query: 140 tcgggaggcggag------acaaggagcacgactgcctccggtggctgaacgcgcagccg 193 ||||| ||||| | ||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 861 tcgggtggcggtggcagcgacaaggatcacgactgcctccggtggctggacgcgcagccg 920 Query: 194 gaccagagcgtagtgttcctctccttcggcagcctgggcacattctccagtaagcagctc 253 ||| | ||||| ||||||||||| ||||| ||| |||| | |||| || ||||||||| Sbjct: 921 gacaacagcgtggtgttcctctcgttcgggagcttgggaaggttctgcaagaagcagctc 980 Query: 254 gaggagatcgcacttggtttggacaagtcgggggagaggttcctgtgggtcgtgcggagc 313 ||||||||||| |||| || | ||||||| | |||||||||| ||||||||||||||| Sbjct: 981 gaggagatcgccattggcctgcagaagtcggagaagaggttcctctgggtcgtgcggagc 1040 Query: 314 ccgcgca 320 ||||||| Sbjct: 1041 ccgcgca 1047
>dbj|AK103129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119O19, full insert sequence Length = 1831 Score = 182 bits (92), Expect = 5e-43 Identities = 208/247 (84%), Gaps = 6/247 (2%) Strand = Plus / Plus Query: 80 gacgggctctgcgtcaccggtcgtgcgacgccgccggtctactgcatcgggccgttggtc 139 ||||||||||||||| |||| ||||| |||||| ||||||||| ||||||||| | ||| Sbjct: 802 gacgggctctgcgtccccggccgtgccacgccgacggtctactccatcgggccaatcgtc 861 Query: 140 tcgggaggcggag------acaaggagcacgactgcctccggtggctgaacgcgcagccg 193 ||||| ||||| | ||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 862 tcgggtggcggtggcagcgacaaggatcacgactgcctccggtggctggacgcgcagccg 921 Query: 194 gaccagagcgtagtgttcctctccttcggcagcctgggcacattctccagtaagcagctc 253 ||| | ||||| ||||||||||| ||||| ||| |||| | |||| || ||||||||| Sbjct: 922 gacaacagcgtggtgttcctctcgttcgggagcttgggaaggttctgcaagaagcagctc 981 Query: 254 gaggagatcgcacttggtttggacaagtcgggggagaggttcctgtgggtcgtgcggagc 313 ||||||||||| |||| || | ||||||| | |||||||||| ||||||||||||||| Sbjct: 982 gaggagatcgccattggcctgcagaagtcggagaagaggttcctctgggtcgtgcggagc 1041 Query: 314 ccgcgca 320 ||||||| Sbjct: 1042 ccgcgca 1048
>dbj|AK065450.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013008B02, full insert sequence Length = 1647 Score = 182 bits (92), Expect = 5e-43 Identities = 208/247 (84%), Gaps = 6/247 (2%) Strand = Plus / Plus Query: 80 gacgggctctgcgtcaccggtcgtgcgacgccgccggtctactgcatcgggccgttggtc 139 ||||||||||||||| |||| ||||| |||||| ||||||||| ||||||||| | ||| Sbjct: 784 gacgggctctgcgtccccggccgtgccacgccgacggtctactccatcgggccaatcgtc 843 Query: 140 tcgggaggcggag------acaaggagcacgactgcctccggtggctgaacgcgcagccg 193 ||||| ||||| | ||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 844 tcgggtggcggtggcagcgacaaggatcacgactgcctccggtggctggacgcgcagccg 903 Query: 194 gaccagagcgtagtgttcctctccttcggcagcctgggcacattctccagtaagcagctc 253 ||| | ||||| ||||||||||| ||||| ||| |||| | |||| || ||||||||| Sbjct: 904 gacaacagcgtggtgttcctctcgttcgggagcttgggaaggttctgcaagaagcagctc 963 Query: 254 gaggagatcgcacttggtttggacaagtcgggggagaggttcctgtgggtcgtgcggagc 313 ||||||||||| |||| || | ||||||| | |||||||||| ||||||||||||||| Sbjct: 964 gaggagatcgccattggcctgcagaagtcggagaagaggttcctctgggtcgtgcggagc 1023 Query: 314 ccgcgca 320 ||||||| Sbjct: 1024 ccgcgca 1030
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 107 bits (54), Expect = 2e-20 Identities = 170/209 (81%), Gaps = 6/209 (2%) Strand = Plus / Minus Query: 107 acgccgccggtctactgcatcgggccgttggtctcgggaggcggagacaaggagcacgac 166 |||||||||||||||||| |||||||| |||||||| ||||| ||||| || |||||| Sbjct: 155069 acgccgccggtctactgcgtcgggccgctggtctcgcccggcggcgacaaagaccacgac 155010 Query: 167 tgc------ctccggtggctgaacgcgcagccggaccagagcgtagtgttcctctccttc 220 ||| ||||| |||||| ||||||||||||||| ||||| |||||||||| |||| Sbjct: 155009 tgcgactgcctccgctggctggacgcgcagccggaccgcagcgtcgtgttcctctgcttc 154950 Query: 221 ggcagcctgggcacattctccagtaagcagctcgaggagatcgcacttggtttggacaag 280 || ||| ||||| | ||| ||| || ||||| ||||||||||| | ||| |||| | | Sbjct: 154949 gggagcatgggcgcgttccccaagaaacagctggaggagatcgccgtcggtctggagagg 154890 Query: 281 tcgggggagaggttcctgtgggtcgtgcg 309 || ||| ||||||| || ||||||||||| Sbjct: 154889 tccgggcagaggtttctctgggtcgtgcg 154861
>gb|AC108499.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1187_E11, complete sequence Length = 133352 Score = 81.8 bits (41), Expect = 1e-12 Identities = 166/207 (80%), Gaps = 3/207 (1%) Strand = Plus / Minus Query: 107 acgccgccggtctactgcatcgggccgttggtctcgggaggcggaga---caaggagcac 163 ||||||||||| | |||| ||||||| |||||||| || |||| || |||| ||||| Sbjct: 54409 acgccgccggtgtgctgcgtcgggccactggtctcgcgaagcggggaggacaagaagcac 54350 Query: 164 gactgcctccggtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggc 223 | |||||| |||||| ||||||||||||| ||||||| |||||||||| |||||| Sbjct: 54349 gggtgcctctcatggctggacgcgcagccggagaagagcgtcgtgttcctctgcttcggg 54290 Query: 224 agcctgggcacattctccagtaagcagctcgaggagatcgcacttggtttggacaagtcg 283 ||| ||||| | ||| ||| ||||||||| ||||||||| |||| |||| | ||| Sbjct: 54289 agcatgggctcgttccccaaggagcagctcgcggagatcgccattgggctggagaggtcc 54230 Query: 284 ggggagaggttcctgtgggtcgtgcgg 310 || |||||||||||||||| |||||| Sbjct: 54229 ggacagaggttcctgtgggtggtgcgg 54203 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| ||||||||||||| |||||| |||||||||| |||||||||| ||||| Sbjct: 11811 gtggctggacgcgcagccggagaggagcgtcgtgttcctctgcttcggcagcttgggc 11868 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggccgttg 136 ||||||||||| |||||||||||||||||| Sbjct: 11731 acgccgccggtgtactgcatcgggccgttg 11760 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Minus Query: 109 gccgccggtctactgcatcgggccgttggtc 139 ||||||| |||||||| |||||||||||||| Sbjct: 44849 gccgccgttctactgcgtcgggccgttggtc 44819 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Minus Query: 109 gccgccggtctactgcatcgggccgttggtc 139 ||||||| ||||||||||| ||||||||||| Sbjct: 36014 gccgccgttctactgcatcaggccgttggtc 35984 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 199 gagcgtagtgttcctctccttcggcagcctgggc 232 |||||| |||||||||| ||||||||||| |||| Sbjct: 19944 gagcgtcgtgttcctctgcttcggcagccagggc 19911 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 199 gagcgtagtgttcctctccttcggcagcctgggc 232 |||||| |||||||||| ||||||||||| |||| Sbjct: 17143 gagcgtcgtgttcctctgcttcggcagccagggc 17110 Score = 44.1 bits (22), Expect = 0.29 Identities = 43/50 (86%) Strand = Plus / Plus Query: 183 acgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||||||||| | |||||| |||||| || |||||||||| ||||| Sbjct: 15089 acgcgcagccggagcggagcgtcgtgttcgtcagcttcggcagcatgggc 15138 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggcc 132 ||||||||||| |||||||||||||| Sbjct: 15001 acgccgccggtgtactgcatcgggcc 15026
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 1e-12 Identities = 166/207 (80%), Gaps = 3/207 (1%) Strand = Plus / Minus Query: 107 acgccgccggtctactgcatcgggccgttggtctcgggaggcggaga---caaggagcac 163 ||||||||||| | |||| ||||||| |||||||| || |||| || |||| ||||| Sbjct: 26029648 acgccgccggtgtgctgcgtcgggccactggtctcgcgaagcggggaggacaagaagcac 26029589 Query: 164 gactgcctccggtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggc 223 | |||||| |||||| ||||||||||||| ||||||| |||||||||| |||||| Sbjct: 26029588 gggtgcctctcatggctggacgcgcagccggagaagagcgtcgtgttcctctgcttcggg 26029529 Query: 224 agcctgggcacattctccagtaagcagctcgaggagatcgcacttggtttggacaagtcg 283 ||| ||||| | ||| ||| ||||||||| ||||||||| |||| |||| | ||| Sbjct: 26029528 agcatgggctcgttccccaaggagcagctcgcggagatcgccattgggctggagaggtcc 26029469 Query: 284 ggggagaggttcctgtgggtcgtgcgg 310 || |||||||||||||||| |||||| Sbjct: 26029468 ggacagaggttcctgtgggtggtgcgg 26029442 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| ||||||||||||| |||||| |||||||||| |||||||||| ||||| Sbjct: 25987050 gtggctggacgcgcagccggagaggagcgtcgtgttcctctgcttcggcagcttgggc 25987107 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggccgttg 136 ||||||||||| |||||||||||||||||| Sbjct: 25986970 acgccgccggtgtactgcatcgggccgttg 25986999 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Minus Query: 109 gccgccggtctactgcatcgggccgttggtc 139 ||||||| |||||||| |||||||||||||| Sbjct: 26020088 gccgccgttctactgcgtcgggccgttggtc 26020058 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Minus Query: 109 gccgccggtctactgcatcgggccgttggtc 139 ||||||| ||||||||||| ||||||||||| Sbjct: 26011253 gccgccgttctactgcatcaggccgttggtc 26011223 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 199 gagcgtagtgttcctctccttcggcagcctgggc 232 |||||| |||||||||| ||||||||||| |||| Sbjct: 25995183 gagcgtcgtgttcctctgcttcggcagccagggc 25995150 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 199 gagcgtagtgttcctctccttcggcagcctgggc 232 |||||| |||||||||| ||||||||||| |||| Sbjct: 25992382 gagcgtcgtgttcctctgcttcggcagccagggc 25992349 Score = 44.1 bits (22), Expect = 0.29 Identities = 43/50 (86%) Strand = Plus / Plus Query: 183 acgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||||||||| | |||||| |||||| || |||||||||| ||||| Sbjct: 25990328 acgcgcagccggagcggagcgtcgtgttcgtcagcttcggcagcatgggc 25990377 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggcc 132 ||||||||||| |||||||||||||| Sbjct: 25990240 acgccgccggtgtactgcatcgggcc 25990265
>dbj|AK110876.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G03, full insert sequence Length = 1514 Score = 81.8 bits (41), Expect = 1e-12 Identities = 166/207 (80%), Gaps = 3/207 (1%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggccgttggtctcgggaggcggaga---caaggagcac 163 ||||||||||| | |||| ||||||| |||||||| || |||| || |||| ||||| Sbjct: 687 acgccgccggtgtgctgcgtcgggccactggtctcgcgaagcggggaggacaagaagcac 746 Query: 164 gactgcctccggtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggc 223 | |||||| |||||| ||||||||||||| ||||||| |||||||||| |||||| Sbjct: 747 gggtgcctctcatggctggacgcgcagccggagaagagcgtcgtgttcctctgcttcggg 806 Query: 224 agcctgggcacattctccagtaagcagctcgaggagatcgcacttggtttggacaagtcg 283 ||| ||||| | ||| ||| ||||||||| ||||||||| |||| |||| | ||| Sbjct: 807 agcatgggctcgttccccaaggagcagctcgcggagatcgccattgggctggagaggtcc 866 Query: 284 ggggagaggttcctgtgggtcgtgcgg 310 || |||||||||||||||| |||||| Sbjct: 867 ggacagaggttcctgtgggtggtgcgg 893
>gb|BT017400.1| Zea mays clone EL01N0328H09.c mRNA sequence Length = 1152 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| |||| |||||||| | |||||| |||||||||| |||||||||||||||| Sbjct: 317 gtggctggacgcacagccggaacggagcgtggtgttcctctgcttcggcagcctgggc 374 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 291 ggttcctgtgggtcgtgcggagcccgc 317 ||||||||||||||||||||||||||| Sbjct: 433 ggttcctgtgggtcgtgcggagcccgc 459
>ref|NM_191572.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1416 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| |||||||||||| | |||||| |||||||||| |||||||||| ||||| Sbjct: 783 gtggctggacgcgcagccggcgcggagcgtggtgttcctctgcttcggcagcatgggc 840 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 291 ggttcctgtgggtcgtgcggagcccgcg 318 ||||||||||||| |||||||||||||| Sbjct: 899 ggttcctgtgggtggtgcggagcccgcg 926
>gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1593_C11, complete sequence Length = 112065 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| ||||||||||||| |||||| |||||||||| |||||||||| ||||| Sbjct: 90121 gtggctggacgcgcagccggagaggagcgtcgtgttcctctgcttcggcagcttgggc 90178 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggccgttg 136 ||||||||||| |||||||||||||||||| Sbjct: 90041 acgccgccggtgtactgcatcgggccgttg 90070 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 199 gagcgtagtgttcctctccttcggcagcctgggc 232 |||||| |||||||||| ||||||||||| |||| Sbjct: 98254 gagcgtcgtgttcctctgcttcggcagccagggc 98221 Score = 44.1 bits (22), Expect = 0.29 Identities = 31/34 (91%) Strand = Plus / Minus Query: 199 gagcgtagtgttcctctccttcggcagcctgggc 232 |||||| |||||||||| ||||||||||| |||| Sbjct: 95453 gagcgtcgtgttcctctgcttcggcagccagggc 95420 Score = 44.1 bits (22), Expect = 0.29 Identities = 43/50 (86%) Strand = Plus / Plus Query: 183 acgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||||||||| | |||||| |||||| || |||||||||| ||||| Sbjct: 93399 acgcgcagccggagcggagcgtcgtgttcgtcagcttcggcagcatgggc 93448 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggcc 132 ||||||||||| |||||||||||||| Sbjct: 93311 acgccgccggtgtactgcatcgggcc 93336
>dbj|AK100689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114D10, full insert sequence Length = 3206 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| |||||||||||| | |||||| |||||||||| |||||||||| ||||| Sbjct: 580 gtggctggacgcgcagccggcgcggagcgtggtgttcctctgcttcggcagcatgggc 523 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Minus Query: 291 ggttcctgtgggtcgtgcggagcccgcg 318 ||||||||||||| |||||||||||||| Sbjct: 464 ggttcctgtgggtggtgcggagcccgcg 437
>dbj|AK100519.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100J15, full insert sequence Length = 1674 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| |||||||||||| | |||||| |||||||||| |||||||||| ||||| Sbjct: 867 gtggctggacgcgcagccggcgcggagcgtggtgttcctctgcttcggcagcatgggc 924 Score = 48.1 bits (24), Expect = 0.019 Identities = 27/28 (96%) Strand = Plus / Plus Query: 291 ggttcctgtgggtcgtgcggagcccgcg 318 ||||||||||||| |||||||||||||| Sbjct: 983 ggttcctgtgggtggtgcggagcccgcg 1010
>dbj|AK066551.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074J04, full insert sequence Length = 1821 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcctgggc 232 ||||||| ||||||||||||| |||||| |||||||||| |||||||||| ||||| Sbjct: 911 gtggctggacgcgcagccggagaggagcgtcgtgttcctctgcttcggcagcttgggc 968 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggccgttg 136 ||||||||||| |||||||||||||||||| Sbjct: 831 acgccgccggtgtactgcatcgggccgttg 860
>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence Length = 130272 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagc 226 ||||||| ||||||||||| |||||| || |||||||||| |||||||||| Sbjct: 78228 gtggctggacgcgcagccgcgccagagtgtcgtgttcctctgcttcggcagc 78177
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagc 226 ||||||| ||||||||||| |||||| || |||||||||| |||||||||| Sbjct: 35077327 gtggctggacgcgcagccgcgccagagtgtcgtgttcctctgcttcggcagc 35077276
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagc 226 ||||||| ||||||||||| |||||| || |||||||||| |||||||||| Sbjct: 35167399 gtggctggacgcgcagccgcgccagagtgtcgtgttcctctgcttcggcagc 35167348
>dbj|AK109007.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-H05, full insert sequence Length = 1527 Score = 56.0 bits (28), Expect = 8e-05 Identities = 46/52 (88%) Strand = Plus / Plus Query: 175 gtggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagc 226 ||||||| ||||||||||| |||||| || |||||||||| |||||||||| Sbjct: 507 gtggctggacgcgcagccgcgccagagtgtcgtgttcctctgcttcggcagc 558
>gb|AC158405.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1366F05, complete sequence Length = 171022 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 199 gagcgtagtgttcctctccttcggcagcctgggc 232 |||||| |||||||||||||||||||||| |||| Sbjct: 162004 gagcgtcgtgttcctctccttcggcagccagggc 161971 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 293 ttcctgtgggtcgtgcggagcccgc 317 ||||||||||||||| ||||||||| Sbjct: 161910 ttcctgtgggtcgtgaggagcccgc 161886
>dbj|AK068878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001K02, full insert sequence Length = 1597 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 199 gagcgtagtgttcctctccttcggcagcctgggc 232 |||||| |||||||||||||||||||||| |||| Sbjct: 726 gagcgtcgtgttcctctccttcggcagccagggc 759 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 293 ttcctgtgggtcgtgcggagcccgc 317 ||||||||||||||| ||||||||| Sbjct: 820 ttcctgtgggtcgtgaggagcccgc 844
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.019 Identities = 45/52 (86%) Strand = Plus / Minus Query: 176 tggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcc 227 |||||| ||||||||||||| | ||||| |||||||||| |||||| |||| Sbjct: 13587199 tggctggacgcgcagccggagcgcagcgtcgtgttcctctgcttcgggagcc 13587148 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 107 acgccgccggtctactgcatcgggcc 132 |||||||||||||||||| ||||||| Sbjct: 13587274 acgccgccggtctactgcgtcgggcc 13587249
>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0459H02 Length = 168230 Score = 48.1 bits (24), Expect = 0.019 Identities = 45/52 (86%) Strand = Plus / Minus Query: 176 tggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcc 227 |||||| ||||||||||||| | ||||| |||||||||| |||||| |||| Sbjct: 115689 tggctggacgcgcagccggagcgcagcgtcgtgttcctctgcttcgggagcc 115638 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 107 acgccgccggtctactgcatcgggcc 132 |||||||||||||||||| ||||||| Sbjct: 115764 acgccgccggtctactgcgtcgggcc 115739
>dbj|AK106646.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E11, full insert sequence Length = 2055 Score = 48.1 bits (24), Expect = 0.019 Identities = 45/52 (86%) Strand = Plus / Minus Query: 176 tggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcc 227 |||||| ||||||||||||| | ||||| |||||||||| |||||| |||| Sbjct: 1018 tggctggacgcgcagccggagcgcagcgtcgtgttcctctgcttcgggagcc 967 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 107 acgccgccggtctactgcatcgggcc 132 |||||||||||||||||| ||||||| Sbjct: 1093 acgccgccggtctactgcgtcgggcc 1068
>dbj|AK102481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094L01, full insert sequence Length = 1918 Score = 48.1 bits (24), Expect = 0.019 Identities = 45/52 (86%) Strand = Plus / Plus Query: 176 tggctgaacgcgcagccggaccagagcgtagtgttcctctccttcggcagcc 227 |||||| ||||||||||||| | ||||| |||||||||| |||||| |||| Sbjct: 845 tggctggacgcgcagccggagcgcagcgtcgtgttcctctgcttcgggagcc 896 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 107 acgccgccggtctactgcatcgggcc 132 |||||||||||||||||| ||||||| Sbjct: 770 acgccgccggtctactgcgtcgggcc 795
>ref|XM_463421.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1455 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Plus Query: 291 ggttcctgtgggtcgtgcggagcccgc 317 ||||||||||||| ||||||||||||| Sbjct: 917 ggttcctgtgggtggtgcggagcccgc 943 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 cgacgccgccggtctactgcatcgg 129 |||||||||| |||||||||||||| Sbjct: 722 cgacgccgcccgtctactgcatcgg 746
>dbj|AP003373.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1116_H09 Length = 110086 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Minus Query: 291 ggttcctgtgggtcgtgcggagcccgc 317 ||||||||||||| ||||||||||||| Sbjct: 60043 ggttcctgtgggtggtgcggagcccgc 60017 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 105 cgacgccgccggtctactgcatcgg 129 |||||||||| |||||||||||||| Sbjct: 60238 cgacgccgcccgtctactgcatcgg 60214
>dbj|AK071819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114N14, full insert sequence Length = 1727 Score = 46.1 bits (23), Expect = 0.074 Identities = 26/27 (96%) Strand = Plus / Plus Query: 291 ggttcctgtgggtcgtgcggagcccgc 317 ||||||||||||| ||||||||||||| Sbjct: 978 ggttcctgtgggtggtgcggagcccgc 1004 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 cgacgccgccggtctactgcatcgg 129 |||||||||| |||||||||||||| Sbjct: 783 cgacgccgcccgtctactgcatcgg 807
>dbj|AK068336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149H05, full insert sequence Length = 1219 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Plus Query: 109 gccgccggtctactgcatcgggccgttggtc 139 ||||||| |||||||| |||||||||||||| Sbjct: 212 gccgccgttctactgcgtcgggccgttggtc 242
>dbj|AK060997.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E09, full insert sequence Length = 1686 Score = 46.1 bits (23), Expect = 0.074 Identities = 29/31 (93%) Strand = Plus / Plus Query: 109 gccgccggtctactgcatcgggccgttggtc 139 ||||||| |||||||| |||||||||||||| Sbjct: 786 gccgccgttctactgcgtcgggccgttggtc 816
>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence Length = 130987 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 107 acgccgccggtctactgcatcgggcc 132 |||||||||||||||||| ||||||| Sbjct: 80408 acgccgccggtctactgcgtcgggcc 80383 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 107 acgccgccggtctactgcatcgggcc 132 |||||||||||||||||| ||||||| Sbjct: 77505 acgccgccggtctactgcgtcgggcc 77480
>emb|AJ496572.1|HVU496572 Hordeum vulgare partial mRNA for putative glycosyltransferase (sf2 gene) Length = 863 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 166 ctgcctccggtggctgaacgcgcagccgg 194 |||||||||||||||| ||||| |||||| Sbjct: 327 ctgcctccggtggctggacgcgaagccgg 355
>gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0085C16, complete sequence Length = 156069 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 ttcctgtgggtcgtgcggagcccg 316 ||||||||||| |||||||||||| Sbjct: 110905 ttcctgtgggtggtgcggagcccg 110882
>emb|AL163283.2|HS21C083 Homo sapiens chromosome 21 segment HS21C083 Length = 340000 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gcacttggtttggacaagtc 282 |||||||||||||||||||| Sbjct: 16389 gcacttggtttggacaagtc 16370
>emb|AL645943.19| Mouse DNA sequence from clone RP23-130E22 on chromosome 11 Contains a prohibitin (Phb) pseudogene and a novel gene, complete sequence Length = 213383 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 ggggagaggttcctgtgggt 303 |||||||||||||||||||| Sbjct: 154728 ggggagaggttcctgtgggt 154747
>gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0043E10, complete sequence Length = 124591 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 ttcctgtgggtcgtgcggagcccg 316 ||||||||||| |||||||||||| Sbjct: 121758 ttcctgtgggtggtgcggagcccg 121781
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 ttcctgtgggtcgtgcggagcccg 316 ||||||||||| |||||||||||| Sbjct: 22072909 ttcctgtgggtggtgcggagcccg 22072886
>dbj|BS000163.1| Pan troglodytes chromosome 22 clone:RP43-010B02, map 22, complete sequences Length = 182740 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gcacttggtttggacaagtc 282 |||||||||||||||||||| Sbjct: 93222 gcacttggtttggacaagtc 93203
>dbj|BS000158.1| Pan troglodytes chromosome 22 clone:PTB-042G18, map 22, complete sequences Length = 190319 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gcacttggtttggacaagtc 282 |||||||||||||||||||| Sbjct: 185900 gcacttggtttggacaagtc 185881
>dbj|AK100744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118G04, full insert sequence Length = 1862 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 ttcctgtgggtcgtgcggagcccg 316 ||||||||||| |||||||||||| Sbjct: 1096 ttcctgtgggtggtgcggagcccg 1119
>emb|AL954234.1|PTB080A15 Pan troglodytes chromosome 22 BAC PTB-080A15, complete sequence Length = 175584 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gcacttggtttggacaagtc 282 |||||||||||||||||||| Sbjct: 175305 gcacttggtttggacaagtc 175286
>gb|U35118.1|TGU35118 Toxoplasma gondii lactate dehydrogenase mRNA, complete cds Length = 1822 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 aagcagctcgaggagatcgc 264 |||||||||||||||||||| Sbjct: 795 aagcagctcgaggagatcgc 814
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 4.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 ttcctgtgggtcgtgcggagcccg 316 ||||||||||| |||||||||||| Sbjct: 22382820 ttcctgtgggtggtgcggagcccg 22382797
>gb|AF064863.3| Homo sapiens chromosome 21 clone RP1-111A18 map 21q22.2, complete sequence Length = 135332 Score = 40.1 bits (20), Expect = 4.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 gcacttggtttggacaagtc 282 |||||||||||||||||||| Sbjct: 70186 gcacttggtttggacaagtc 70167 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,437,527 Number of Sequences: 3902068 Number of extensions: 2437527 Number of successful extensions: 32536 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 32356 Number of HSP's gapped (non-prelim): 174 length of query: 343 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 321 effective length of database: 17,147,199,772 effective search space: 5504251126812 effective search space used: 5504251126812 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
