>PSBQ1_MAIZE (Q41048) Oxygen-evolving enhancer protein 3-1, chloroplast|
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit)
          Length = 217

 Score =  127 bits (318), Expect = 2e-29
 Identities = 76/146 (52%), Positives = 84/146 (57%), Gaps = 8/146 (5%)
 Frame = +1

Query: 52  MAQTMASMTGLSQGVRLPGPAGRRASRFTXXXXXXXXXXXXXXXXXXX--------MASG 207
           MAQ MASMTGLSQGV LP    RRA   T                           +A+G
Sbjct: 1   MAQAMASMTGLSQGV-LPS---RRADSRTRTAVVIVRASAEGDAVAQAGRRAVIGLVATG 56

Query: 208 VVGSAFAQVVHAGTVAAIKVXXXXXXXXXXXXTDNSDEARDFDLPLKNRFYLQPLPPAQA 387
           +VG A +Q   A TV  IK+            T NSD+ARDFDLPLK RFYLQPLPPA+A
Sbjct: 57  IVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPLKERFYLQPLPPAEA 116

Query: 388 AVRAKESAQDILNLKPLIDKKQWPYV 465
           A R K SAQDI+NLKPLIDKK WPYV
Sbjct: 117 AARVKTSAQDIINLKPLIDKKAWPYV 142

>PSBQ2_MAIZE (Q41806) Oxygen-evolving enhancer protein 3-2, chloroplast|
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit)
           (Ferredoxin-NADP reductase-binding protein) (BP)
          Length = 213

 Score =  117 bits (294), Expect = 1e-26
 Identities = 66/138 (47%), Positives = 74/138 (53%)
 Frame = +1

Query: 52  MAQTMASMTGLSQGVRLPGPAGRRASRFTXXXXXXXXXXXXXXXXXXXMASGVVGSAFAQ 231
           MAQ MASMTGLSQGV       R  +                      + +       +Q
Sbjct: 1   MAQAMASMTGLSQGVCPAAADSRTRTAVVVVRASAEGDRCAGGPRCDRLVATASSPPLSQ 60

Query: 232 VVHAGTVAAIKVXXXXXXXXXXXXTDNSDEARDFDLPLKNRFYLQPLPPAQAAVRAKESA 411
            VHA TV  IK+            T NSD+ RDFDLPLK RFYLQPLPPA+A  R K SA
Sbjct: 61  AVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLKERFYLQPLPPAEAVARVKTSA 120

Query: 412 QDILNLKPLIDKKQWPYV 465
           QDI+NLKPLIDKK WPYV
Sbjct: 121 QDIINLKPLIDKKAWPYV 138

>PSBQ1_ARATH (Q9XFT3) Oxygen-evolving enhancer protein 3-1, chloroplast|
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit)
          Length = 223

 Score =  103 bits (256), Expect = 3e-22
 Identities = 52/90 (57%), Positives = 65/90 (72%)
 Frame = +1

Query: 196 MASGVVGSAFAQVVHAGTVAAIKVXXXXXXXXXXXXTDNSDEARDFDLPLKNRFYLQPLP 375
           +A+G+ G +F Q V A  ++ IKV            TDNSD+ARDF L LK+RFYLQPLP
Sbjct: 60  VAAGLAGGSFVQAVLADAIS-IKVGPPPAPSGGLPGTDNSDQARDFALALKDRFYLQPLP 118

Query: 376 PAQAAVRAKESAQDILNLKPLIDKKQWPYV 465
           P +AA RAKESA+DI+N+KPLID+K WPYV
Sbjct: 119 PTEAAARAKESAKDIINVKPLIDRKAWPYV 148

>PSBQ2_ARATH (Q41932) Oxygen-evolving enhancer protein 3-2, chloroplast|
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit)
          Length = 230

 Score = 92.0 bits (227), Expect = 7e-19
 Identities = 46/90 (51%), Positives = 61/90 (67%)
 Frame = +1

Query: 196 MASGVVGSAFAQVVHAGTVAAIKVXXXXXXXXXXXXTDNSDEARDFDLPLKNRFYLQPLP 375
           +A+G+ G +F + V A  +  IKV            TDNSD+ARDF L LK+RFY+QPL 
Sbjct: 67  VAAGLAGGSFVKAVFAEAIP-IKVGGPPLPSGGLPGTDNSDQARDFSLALKDRFYIQPLS 125

Query: 376 PAQAAVRAKESAQDILNLKPLIDKKQWPYV 465
           P +AA RAK+SA++I+N+K  IDKK WPYV
Sbjct: 126 PTEAAARAKDSAKEIINVKSFIDKKAWPYV 155

>PSBQ_SPIOL (P12301) Oxygen-evolving enhancer protein 3, chloroplast precursor|
           (OEE3) (16 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 16 kDa subunit)
          Length = 232

 Score = 75.9 bits (185), Expect = 5e-14
 Identities = 59/156 (37%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
 Frame = +1

Query: 52  MAQTMASMTGL---SQGV-----------RLPGPAGRRAS-----RFTXXXXXXXXXXXX 174
           MAQ MASM GL   SQ V           RL GP   R +                    
Sbjct: 1   MAQAMASMAGLRGASQAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETS 60

Query: 175 XXXXXXXMASGVVGSAFAQVVHAGTVAAIKVXXXXXXXXXXXXTDNSDEARDFDLPL-KN 351
                  +A+G+   +F + V A     I V            T+NSD+ARD  LP  K+
Sbjct: 61  RRAMLGFVAAGLASGSFVKAVLA-EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKD 119

Query: 352 RFYLQPLPPAQAAVRAKESAQDILNLKPLIDKKQWP 459
           RFYLQPLPP +AA RAK SA +ILN+K  ID+K WP
Sbjct: 120 RFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWP 155

>PSBQ_ONOVI (O22591) Oxygen-evolving enhancer protein 3, chloroplast precursor|
           (OEE3) (16 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 16 kDa subunit)
          Length = 231

 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 39/85 (45%), Positives = 52/85 (61%)
 Frame = +1

Query: 196 MASGVVGSAFAQVVHAGTVAAIKVXXXXXXXXXXXXTDNSDEARDFDLPLKNRFYLQPLP 375
           +A+G+  ++F Q V A     IKV            T NSDEARD  LPLK RFY+QPL 
Sbjct: 67  VATGLASASFVQAVLA-EAKPIKVGGPPPPSGGLGGTLNSDEARDLKLPLKERFYIQPLS 125

Query: 376 PAQAAVRAKESAQDILNLKPLIDKK 450
           P +AA R +ESA++I+ +K  ID+K
Sbjct: 126 PTEAAQRQRESAKEIVAVKKFIDQK 150

>PSBQ_ORYSA (P83646) Oxygen-evolving enhancer protein 3 (OEE3) (LP02)|
           (Fragments)
          Length = 22

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 340 PLKNRFYLQPLPPAQAAVR 396
           P    FYLQPLPPA+AA R
Sbjct: 4   PPPQSFYLQPLPPAEAAAR 22

>Y4JQ_RHISN (P55517) Hypothetical 115.9 kDa protein y4jQ|
          Length = 1039

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 325 RDFDLPLKNRFYLQPLPP---AQAAVRAKESAQDILNLKPLIDKKQ 453
           R+FD+ L N F+ QP  P     +++ A +SAQ + ++K  + K++
Sbjct: 332 REFDIALANEFFHQPQSPRAYLASSIFAMKSAQTLADVKSALYKRE 377

>BIND_STRFN (P23118) Bindin precursor|
          Length = 485

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 288 GERRRRANLDGRDGAGVH-HLSERAADDSAGHEAKD 184
           GE R+R   D  DG  V    S R  D+ AGH+ KD
Sbjct: 157 GETRKRRGADDNDGDDVSKRASPRKGDEPAGHKLKD 192


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.131    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,232,370
Number of Sequences: 219361
Number of extensions: 578698
Number of successful extensions: 1864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1860
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)