ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet02e02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF475110.1| Triticum aestivum oxygen-evolving complex precursor, mRNA, partial cds Length = 567 Score = 745 bits (376), Expect = 0.0 Identities = 411/424 (96%) Strand = Plus / Plus Query: 41 caaagcttgagatggcgcaaactatggcgtccatgaccggcctgtcacagggcgtgcgtc 100 |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct: 5 caaagcttgagatggcgcaaaccatggcgtccatgaccggcctgtcgcagggcgtgcgtc 64 Query: 101 tcccaggcccggccggcaggcgcgccagcaggttcaccgtgagggcgtcgtcggcggagg 160 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 65 tcccaggcccggccggcaggcgcgccagcaggttcatcgtgagggcgtcgtcggcggagg 124 Query: 161 ccgaagccgccggccgccgcgcggtccttggcctcatggccagcggagtcgtcggcagcg 220 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 cggaggccgccggccgccgcgcggtccttggcctcatggccagcggagtcgtcggcagcg 184 Query: 221 cgttcgctcaggtggtgcacgccggcaccgtcgcggccatcaaggttggcccgccgcctc 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 185 cgttcgctcaggtggtgcacgccggcaccgtcgcggccatcaaggttggcccgccgccgc 244 Query: 281 cgctctccggtggactccccggcacggacaactcggacgaggcaagggacttcgacctgc 340 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 245 cgctctccggtggactccccggaacggacaactccgacgaggcaagggacttcgacctgc 304 Query: 341 ccctgaagaaccggttctacctgcagccgctgccaccggcgcaggcggcggtccgggcca 400 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 305 ccctgaagaaccggttctacctgcagccgctgccaccggcggaggcggcggtccgggcca 364 Query: 401 aggagtcggcccaggacatcctcaacctcaagccgctcatcgacaagaagcaatggccgt 460 | ||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 365 angagtcggnccangacatnctcaacctcaagccgctcatcgacaagaagcaatggccgt 424 Query: 461 acgt 464 |||| Sbjct: 425 acgt 428
>ref|XM_478627.1| Oryza sativa (japonica cultivar-group), mRNA Length = 847 Score = 178 bits (90), Expect = 1e-41 Identities = 180/210 (85%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactccccggcacggacaactcgg 316 |||||||| | ||||| ||||| |||| ||||||||||||||| || ||| ||||||| Sbjct: 277 ccatcaagctcggccccccgccaccgccctccggtggactccctgggacgctgaactcgg 336 Query: 317 acgaggcaagggacttcgacctgcccctgaagaaccggttctacctgcagccgctgccac 376 || |||| |||||| |||||||| |||| | | |||||||||||||||||||||| | Sbjct: 337 accaggcgagggacacggacctgccgctgagggaaaggttctacctgcagccgctgccgc 396 Query: 377 cggcgcaggcggcggtccgggccaaggagtcggcccaggacatcctcaacctcaagccgc 436 ||||| ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 397 cggcggaggcggcggcgagggcgaaggagtcggcccaggacatcatcaacctcaagccgc 456 Query: 437 tcatcgacaagaagcaatggccgtacgtca 466 ||||||| |||||||| ||||||| ||||| Sbjct: 457 tcatcgagaagaagcagtggccgttcgtca 486 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 64 atggcgtccatgaccggcctgtcacagggcgtgc 97 ||||||||||||||||| ||||| |||||||||| Sbjct: 72 atggcgtccatgaccgggctgtcgcagggcgtgc 105
>ref|XM_506400.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1582_D10.6 mRNA Length = 962 Score = 178 bits (90), Expect = 1e-41 Identities = 180/210 (85%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactccccggcacggacaactcgg 316 |||||||| | ||||| ||||| |||| ||||||||||||||| || ||| ||||||| Sbjct: 277 ccatcaagctcggccccccgccaccgccctccggtggactccctgggacgctgaactcgg 336 Query: 317 acgaggcaagggacttcgacctgcccctgaagaaccggttctacctgcagccgctgccac 376 || |||| |||||| |||||||| |||| | | |||||||||||||||||||||| | Sbjct: 337 accaggcgagggacacggacctgccgctgagggaaaggttctacctgcagccgctgccgc 396 Query: 377 cggcgcaggcggcggtccgggccaaggagtcggcccaggacatcctcaacctcaagccgc 436 ||||| ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 397 cggcggaggcggcggcgagggcgaaggagtcggcccaggacatcatcaacctcaagccgc 456 Query: 437 tcatcgacaagaagcaatggccgtacgtca 466 ||||||| |||||||| ||||||| ||||| Sbjct: 457 tcatcgagaagaagcagtggccgttcgtca 486 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 64 atggcgtccatgaccggcctgtcacagggcgtgc 97 ||||||||||||||||| ||||| |||||||||| Sbjct: 72 atggcgtccatgaccgggctgtcgcagggcgtgc 105
>dbj|AK099127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045A04, full insert sequence Length = 847 Score = 178 bits (90), Expect = 1e-41 Identities = 180/210 (85%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactccccggcacggacaactcgg 316 |||||||| | ||||| ||||| |||| ||||||||||||||| || ||| ||||||| Sbjct: 277 ccatcaagctcggccccccgccaccgccctccggtggactccctgggacgctgaactcgg 336 Query: 317 acgaggcaagggacttcgacctgcccctgaagaaccggttctacctgcagccgctgccac 376 || |||| |||||| |||||||| |||| | | |||||||||||||||||||||| | Sbjct: 337 accaggcgagggacacggacctgccgctgagggaaaggttctacctgcagccgctgccgc 396 Query: 377 cggcgcaggcggcggtccgggccaaggagtcggcccaggacatcctcaacctcaagccgc 436 ||||| ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 397 cggcggaggcggcggcgagggcgaaggagtcggcccaggacatcatcaacctcaagccgc 456 Query: 437 tcatcgacaagaagcaatggccgtacgtca 466 ||||||| |||||||| ||||||| ||||| Sbjct: 457 tcatcgagaagaagcagtggccgttcgtca 486 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 64 atggcgtccatgaccggcctgtcacagggcgtgc 97 ||||||||||||||||| ||||| |||||||||| Sbjct: 72 atggcgtccatgaccgggctgtcgcagggcgtgc 105
>dbj|AK069170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I02, full insert sequence Length = 962 Score = 178 bits (90), Expect = 1e-41 Identities = 180/210 (85%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactccccggcacggacaactcgg 316 |||||||| | ||||| ||||| |||| ||||||||||||||| || ||| ||||||| Sbjct: 277 ccatcaagctcggccccccgccaccgccctccggtggactccctgggacgctgaactcgg 336 Query: 317 acgaggcaagggacttcgacctgcccctgaagaaccggttctacctgcagccgctgccac 376 || |||| |||||| |||||||| |||| | | |||||||||||||||||||||| | Sbjct: 337 accaggcgagggacacggacctgccgctgagggaaaggttctacctgcagccgctgccgc 396 Query: 377 cggcgcaggcggcggtccgggccaaggagtcggcccaggacatcctcaacctcaagccgc 436 ||||| ||||||||| |||| ||||||||||||||||||||| ||||||||||||||| Sbjct: 397 cggcggaggcggcggcgagggcgaaggagtcggcccaggacatcatcaacctcaagccgc 456 Query: 437 tcatcgacaagaagcaatggccgtacgtca 466 ||||||| |||||||| ||||||| ||||| Sbjct: 457 tcatcgagaagaagcagtggccgttcgtca 486 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 64 atggcgtccatgaccggcctgtcacagggcgtgc 97 ||||||||||||||||| ||||| |||||||||| Sbjct: 72 atggcgtccatgaccgggctgtcgcagggcgtgc 105
>gb|M87435.1|ZEAOE17 Zea mays precursor of the oxygen evolving complex 17 kDa protein mRNA, complete cds Length = 810 Score = 168 bits (85), Expect = 1e-38 Identities = 178/209 (85%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactccccggcacggacaactcgg 316 |||||||| |||| | ||||| |||| |||||||||||||||||| || |||||| | Sbjct: 265 ccatcaagattggagccccgccgccgccctccggtggactccccgggactctcaactctg 324 Query: 317 acgaggcaagggacttcgacctgcccctgaagaaccggttctacctgcagccgctgccac 376 || |||| |||||||||||||| ||| ||||| | ||||||||||||||||||||||| | Sbjct: 325 accaggcgagggacttcgacctccccttgaaggagcggttctacctgcagccgctgccgc 384 Query: 377 cggcgcaggcggcggtccgggccaaggagtcggcccaggacatcctcaacctcaagccgc 436 ||||| ||||||||| ||| ||| |||||| ||||||||| ||||||||||||||| Sbjct: 385 cggcggaggcggcggcgagggtgaagacgtcggcgcaggacatcatcaacctcaagccgc 444 Query: 437 tcatcgacaagaagcaatggccgtacgtc 465 |||||||||||||| |||||||||||| Sbjct: 445 tcatcgacaagaaggcgtggccgtacgtc 473 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Plus Query: 48 tgagatggcgcaaactatggcgtccatgaccggcctgtcacagggcgt 95 ||||||||| ||| | |||||||| ||||||||||| || |||||||| Sbjct: 44 tgagatggcacaagccatggcgtcgatgaccggcctctcgcagggcgt 91
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 153 bits (77), Expect = 6e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 310 aactcggacgaggcaagggacttcgacctgcccctgaagaaccggttctacctgcagccg 369 ||||||||| |||| |||||| |||||||| |||| | | ||||||||||||||||| Sbjct: 21521418 aactcggaccaggcgagggacacggacctgccgctgagggaaaggttctacctgcagccg 21521477 Query: 370 ctgccaccggcgcaggcggcggtccgggccaaggagtcggcccaggacatcctcaacctc 429 ||||| |||||| ||||||||| |||| ||||||||||||||||||||| |||||||| Sbjct: 21521478 ctgccgccggcggaggcggcggcgagggcgaaggagtcggcccaggacatcatcaacctc 21521537 Query: 430 aagccgctcatcgacaagaagcaatggccgtacgtca 466 |||||||||||||| |||||||| ||||||| ||||| Sbjct: 21521538 aagccgctcatcgagaagaagcagtggccgttcgtca 21521574 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 64 atggcgtccatgaccggcctgtcacagggcgtgc 97 ||||||||||||||||| ||||| |||||||||| Sbjct: 21520937 atggcgtccatgaccgggctgtcgcagggcgtgc 21520970 Score = 44.1 bits (22), Expect = 0.40 Identities = 37/42 (88%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactcc 298 |||||||| | ||||| ||||| |||| |||||||||||||| Sbjct: 21521142 ccatcaagctcggccccccgccaccgccctccggtggactcc 21521183
>dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1582_D10 Length = 103475 Score = 153 bits (77), Expect = 6e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 310 aactcggacgaggcaagggacttcgacctgcccctgaagaaccggttctacctgcagccg 369 ||||||||| |||| |||||| |||||||| |||| | | ||||||||||||||||| Sbjct: 59202 aactcggaccaggcgagggacacggacctgccgctgagggaaaggttctacctgcagccg 59261 Query: 370 ctgccaccggcgcaggcggcggtccgggccaaggagtcggcccaggacatcctcaacctc 429 ||||| |||||| ||||||||| |||| ||||||||||||||||||||| |||||||| Sbjct: 59262 ctgccgccggcggaggcggcggcgagggcgaaggagtcggcccaggacatcatcaacctc 59321 Query: 430 aagccgctcatcgacaagaagcaatggccgtacgtca 466 |||||||||||||| |||||||| ||||||| ||||| Sbjct: 59322 aagccgctcatcgagaagaagcagtggccgttcgtca 59358 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 64 atggcgtccatgaccggcctgtcacagggcgtgc 97 ||||||||||||||||| ||||| |||||||||| Sbjct: 58721 atggcgtccatgaccgggctgtcgcagggcgtgc 58754 Score = 44.1 bits (22), Expect = 0.40 Identities = 37/42 (88%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactcc 298 |||||||| | ||||| ||||| |||| |||||||||||||| Sbjct: 58926 ccatcaagctcggccccccgccaccgccctccggtggactcc 58967
>gb|AY103825.1| Zea mays PCO072668 mRNA sequence Length = 1009 Score = 139 bits (70), Expect = 9e-30 Identities = 197/238 (82%), Gaps = 1/238 (0%) Strand = Plus / Plus Query: 229 caggtggtgcacgccggcaccgtcgcggccatcaaggttggcccgccgcctccgctctcc 288 |||| ||||||||||| |||||| | |||||||| | || | ||||| |||| |||| Sbjct: 292 caggcggtgcacgccgagaccgtcaagaccatcaagatcggagccccgccgccgccctcc 351 Query: 289 ggtgg-actccccggcacggacaactcggacgaggcaagggacttcgacctgcccctgaa 347 ||||| ||||||||| || ||||| ||| |||| |||||||||||||| ||| |||| Sbjct: 352 ggtgggactccccgggactctgaactctgaccaggcgagggacttcgacctccccttgaa 411 Query: 348 gaaccggttctacctgcagccgctgccaccggcgcaggcggcggtccgggccaaggagtc 407 | | ||||||||||||||||||||||| |||||| ||||||||| ||| ||| ||| Sbjct: 412 ggagcggttctacctgcagccgctgccgccggcggaggcggcggcgagggtgaagacgtc 471 Query: 408 ggcccaggacatcctcaacctcaagccgctcatcgacaagaagcaatggccgtacgtc 465 ||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||||| Sbjct: 472 ggcgcaggacatcatcaacctcaagccactcatcgacaagaaggcgtggccgtacgtc 529 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 48 tgagatggcgcaaactatggcgtccatgaccggcctgtcacagggcgt 95 ||||||||| ||| | |||||||||||||||||||| || |||||||| Sbjct: 102 tgagatggcacaagccatggcgtccatgaccggcctctcgcagggcgt 149
>emb|Z26824.1|ZMFNRBP Zea mays gene for Ferredoxin-NADP reductase binding protein Length = 1760 Score = 113 bits (57), Expect = 5e-22 Identities = 120/141 (85%) Strand = Plus / Plus Query: 325 agggacttcgacctgcccctgaagaaccggttctacctgcagccgctgccaccggcgcag 384 |||||||||||||| ||| ||||| | ||||||||||||||||||||||| ||||| || Sbjct: 1201 agggacttcgacctccccttgaaggagcggttctacctgcagccgctgccgccggccgag 1260 Query: 385 gcggcggtccgggccaaggagtcggcccaggacatcctcaacctcaagccgctcatcgac 444 || | || ||| ||| |||||| ||||||||| ||||||||||||||||||||||| Sbjct: 1261 gcagtggcgagggtgaagacgtcggcgcaggacatcatcaacctcaagccgctcatcgac 1320 Query: 445 aagaagcaatggccgtacgtc 465 |||||| |||||||||||| Sbjct: 1321 aagaaggcgtggccgtacgtc 1341 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 48 tgagatggcgcaaactatggcgtccatgaccggcctgtcacaggg 92 ||||||||| ||| | |||||||| ||||||||||| || ||||| Sbjct: 689 tgagatggcacaagccatggcgtcgatgaccggcctctcgcaggg 733
>dbj|AK058793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G03, full insert sequence Length = 688 Score = 109 bits (55), Expect = 8e-21 Identities = 82/91 (90%) Strand = Plus / Plus Query: 376 ccggcgcaggcggcggtccgggccaaggagtcggcccaggacatcctcaacctcaagccg 435 |||||| ||||||||| |||| ||||||||||||||||||||| |||||||||||||| Sbjct: 265 ccggcggaggcggcggcgagggcgaaggagtcggcccaggacatcatcaacctcaagccg 324 Query: 436 ctcatcgacaagaagcaatggccgtacgtca 466 |||||||| |||||||| ||||||| ||||| Sbjct: 325 ctcatcgagaagaagcagtggccgttcgtca 355 Score = 46.1 bits (23), Expect = 0.10 Identities = 38/43 (88%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactccc 299 |||||||| | ||||| ||||| |||| ||||||||||||||| Sbjct: 117 ccatcaagctcggccccccgccaccgccctccggtggactccc 159
>gb|AY389744.1| Hyacinthus orientalis oxygen-evolving enhancer protein 3 mRNA, partial cds Length = 551 Score = 85.7 bits (43), Expect = 1e-13 Identities = 124/151 (82%) Strand = Plus / Plus Query: 257 ccatcaaggttggcccgccgcctccgctctccggtggactccccggcacggacaactcgg 316 |||||| ||| |||||||| || ||||||||||| |||||||| || ||||| ||||| | Sbjct: 268 ccatcacggtgggcccgcctccgccgctctccggcggactccctgggacggagaactccg 327 Query: 317 acgaggcaagggacttcgacctgcccctgaagaaccggttctacctgcagccgctgccac 376 || |||| | ||| | ||||| |||||| | ||||||||||||||||||||||||| Sbjct: 328 accaggcgacagacgagaagctgccgctgaaggagcggttctacctgcagccgctgccac 387 Query: 377 cggcgcaggcggcggtccgggccaaggagtc 407 | ||| | |||||||| |||||||||||| Sbjct: 388 ccgcggacgcggcggtgacggccaaggagtc 418
>ref|NM_187686.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 936 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 353 ggttctacctgcagccgctgccaccggcgcaggcggcgg 391 ||||||||||||||||| |||| || ||| ||||||||| Sbjct: 117 ggttctacctgcagccgttgccgccagcggaggcggcgg 155
>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07, complete sequence Length = 142134 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 353 ggttctacctgcagccgctgccaccgg 379 |||||||||||||||||||||| |||| Sbjct: 112088 ggttctacctgcagccgctgccgccgg 112114
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 353 ggttctacctgcagccgctgccaccggcgcaggcggcgg 391 ||||||||||||||||| |||| || ||| ||||||||| Sbjct: 6359846 ggttctacctgcagccgttgccgccagcggaggcggcgg 6359808
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 353 ggttctacctgcagccgctgccaccggcgcaggcggcgg 391 ||||||||||||||||| |||| || ||| ||||||||| Sbjct: 39972 ggttctacctgcagccgttgccgccagcggaggcggcgg 39934
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 353 ggttctacctgcagccgctgccaccgg 379 |||||||||||||||||||||| |||| Sbjct: 14252755 ggttctacctgcagccgctgccgccgg 14252781
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Minus Query: 353 ggttctacctgcagccgctgccaccggcgcaggcggcgg 391 ||||||||||||||||| |||| || ||| ||||||||| Sbjct: 6359059 ggttctacctgcagccgttgccgccagcggaggcggcgg 6359021
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 111 ggccggcaggcgcgccagcaggt 133 ||||||||||||||||||||||| Sbjct: 4075886 ggccggcaggcgcgccagcaggt 4075908 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 caggcgcgccagcaggttca 136 |||||||||||||||||||| Sbjct: 5682359 caggcgcgccagcaggttca 5682340
>ref|XM_850258.1| PREDICTED: Canis familiaris similar to Delta-like protein 3 precursor (Drosophila Delta homolog 3) (LOC484508), mRNA Length = 1302 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cccaggcccggccggcaggcg 122 ||||||||||||||||||||| Sbjct: 65 cccaggcccggccggcaggcg 85
>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16 Length = 346362 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 ccggccggcaggcgcgccagcaggt 133 |||||||||| |||||||||||||| Sbjct: 175584 ccggccggcatgcgcgccagcaggt 175608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ggccggcaggcgcgccagca 130 |||||||||||||||||||| Sbjct: 135199 ggccggcaggcgcgccagca 135180
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 ccggccggcaggcgcgccagcaggt 133 |||||||||| |||||||||||||| Sbjct: 88405 ccggccggcatgcgcgccagcaggt 88429
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 ccggccggcaggcgcgccagcaggt 133 |||||||||| |||||||||||||| Sbjct: 163963 ccggccggcatgcgcgccagcaggt 163987
>gb|AE012004.1| Xanthomonas axonopodis pv. citri str. 306, section 382 of 469 of the complete genome Length = 10477 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ggcgcgccagcaggttcaccg 139 ||||||||||||||||||||| Sbjct: 305 ggcgcgccagcaggttcaccg 325
>gb|AE012113.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 21 of 460 of the complete genome Length = 11218 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 gaggccgaagccgccggccgc 177 ||||||||||||||||||||| Sbjct: 8107 gaggccgaagccgccggccgc 8127
>gb|AC171006.3| Gallus gallus BAC clone CH261-172K16 from chromosome ul, complete sequence Length = 206511 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 caagggaagagagaagcaaag 45 ||||||||||||||||||||| Sbjct: 37817 caagggaagagagaagcaaag 37797
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 157 gaggccgaagccgccggccgc 177 ||||||||||||||||||||| Sbjct: 229717 gaggccgaagccgccggccgc 229737 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ggccggcaggcgcgccagca 130 |||||||||||||||||||| Sbjct: 3710640 ggccggcaggcgcgccagca 3710621 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 cggccgccgcgcggtccttg 190 |||||||||||||||||||| Sbjct: 3407823 cggccgccgcgcggtccttg 3407804
>gb|AC171112.2| Gallus gallus BAC clone CH261-138H22 from chromosome ul, complete sequence Length = 198767 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 caagggaagagagaagcaaag 45 ||||||||||||||||||||| Sbjct: 106265 caagggaagagagaagcaaag 106245
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 gccgaagccgccggccgccgc 180 ||||||||||||||||||||| Sbjct: 758177 gccgaagccgccggccgccgc 758197
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 cggccggcaggcgcgccagca 130 ||||||||||||||||||||| Sbjct: 3917579 cggccggcaggcgcgccagca 3917599
>gb|AC005730.1|AC005730 Homo sapiens chromosome 17, clone hRPK.209_D_14, complete sequence Length = 162025 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 377 cggcgcaggcggcggtccggg 397 ||||||||||||||||||||| Sbjct: 52151 cggcgcaggcggcggtccggg 52131
>emb|AL807386.14| Mouse DNA sequence from clone RP23-190K7 on chromosome 2, complete sequence Length = 183076 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 agagagtgcaagggaagagag 37 ||||||||||||||||||||| Sbjct: 25477 agagagtgcaagggaagagag 25497
>gb|M94370.1|SAUSIGA Stigmatella aurantiaca sigma factor (sigA) gene, complete cds Length = 2748 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 419 tcctcaacctcaagccgctcatcga 443 ||||||||||||||| ||||||||| Sbjct: 1579 tcctcaacctcaagcagctcatcga 1603
>dbj|AB070955.1| Streptomyces avermitilis peptide-6 biosynthetic gene cluster Length = 14452 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 gccgaagccgccggccgccgc 180 ||||||||||||||||||||| Sbjct: 7677 gccgaagccgccggccgccgc 7657
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 426 cctcaagccgctcatcgacaagaa 449 ||||||| |||||||||||||||| Sbjct: 730940 cctcaagacgctcatcgacaagaa 730917
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 aggccgaagccgccggccgccgcg 181 ||||||| |||||||||||||||| Sbjct: 2717811 aggccgacgccgccggccgccgcg 2717834
>ref|XM_473083.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 294 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 cgccgcctccgctctccggt 291 |||||||||||||||||||| Sbjct: 54 cgccgcctccgctctccggt 35
>gb|AY163380.1| Zea mays putative ROP family GTPase ROP6 gene, complete cds Length = 2031 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 gtctcccaggcccggccggcaggc 121 ||||||||| |||||||||||||| Sbjct: 36 gtctcccagccccggccggcaggc 13
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gcgcgccagcaggttcaccg 139 |||||||||||||||||||| Sbjct: 1019432 gcgcgccagcaggttcaccg 1019451
>gb|DQ017476.1| Nacobbus aberrans clone N211L 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 952 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 gcggaggccgaagccgccgg 173 |||||||||||||||||||| Sbjct: 102 gcggaggccgaagccgccgg 83
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggtggtgcacgccggcaccg 250 |||||||||||||||||||| Sbjct: 37958 ggtggtgcacgccggcaccg 37939
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 cgccgcctccgctctccggt 291 |||||||||||||||||||| Sbjct: 36811 cgccgcctccgctctccggt 36792
>emb|AJ278665.1|ZMA278665 Zea mays mRNA for putative Rop family GTPase, ROP6 (rop6 gene) Length = 945 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 gtctcccaggcccggccggcaggc 121 ||||||||| |||||||||||||| Sbjct: 36 gtctcccagccccggccggcaggc 13
>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence Length = 102653 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 gcagccgctgccaccggcgc 382 |||||||||||||||||||| Sbjct: 91312 gcagccgctgccaccggcgc 91331
>gb|AC090435.28| Chlamydomonas reinhardtii clone cr-32m22, complete sequence Length = 79677 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 363 gcagccgctgccaccggcgc 382 |||||||||||||||||||| Sbjct: 38561 gcagccgctgccaccggcgc 38542
>gb|AE012240.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 148 of 460 of the complete genome Length = 10615 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cggccgccgcgcggtccttg 190 |||||||||||||||||||| Sbjct: 2179 cggccgccgcgcggtccttg 2198
>gb|AE012213.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 121 of 460 of the complete genome Length = 10877 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 ggccggcaggcgcgccagca 130 |||||||||||||||||||| Sbjct: 3735 ggccggcaggcgcgccagca 3754
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ccagcaggttcaccgtgagg 144 |||||||||||||||||||| Sbjct: 3292993 ccagcaggttcaccgtgagg 3293012
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 cgccgcctccgctctccggt 291 |||||||||||||||||||| Sbjct: 25155144 cgccgcctccgctctccggt 25155125
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 159 ggccgaagccgccggccgccgcgc 182 |||||| ||||||||||||||||| Sbjct: 4608111 ggccgaggccgccggccgccgcgc 4608134
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 cgccgcctccgctctccggt 291 |||||||||||||||||||| Sbjct: 102571 cgccgcctccgctctccggt 102552
>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940127D9, complete sequence Length = 102832 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 266 ttggcccgccgcctccgctctccggtgg 293 |||||||||||| ||| ||||||||||| Sbjct: 101301 ttggcccgccgcatcccctctccggtgg 101274
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 420 cctcaacctcaagccgctcatcgacaag 447 |||||||| ||||| ||||||||||||| Sbjct: 291885 cctcaaccgcaagcagctcatcgacaag 291912 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,294,416 Number of Sequences: 3902068 Number of extensions: 3294416 Number of successful extensions: 83810 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81739 Number of HSP's gapped (non-prelim): 2069 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
