ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet02c10 |
|---|---|
| Clone Library Name | barley_pub |
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 112 bits (281), Expect = 4e-25 Identities = 55/126 (43%), Positives = 76/126 (60%) Frame = +1 Query: 103 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 282 KGPGL+TDIGKKA+DLL +DY D+K KKG L+ DV + K Sbjct: 2 KGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKN 61 Query: 283 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 462 KN D+KVDT SN+ TT+TV + P K + S K P+ +GKVE+QY H+ +++VG Sbjct: 62 KNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVG 121 Query: 463 MKPSPM 480 +K +P+ Sbjct: 122 LKANPI 127
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 111 bits (278), Expect = 9e-25 Identities = 55/126 (43%), Positives = 72/126 (57%) Frame = +1 Query: 103 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 282 KGPGL+T+IGKKA+DLL RDY DQK KG L+ DVA+ K Sbjct: 2 KGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKN 61 Query: 283 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 462 N DVKV T+S++ TTLT + P K++ K PD+ +GK EVQYFHD + +VG Sbjct: 62 NNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVG 121 Query: 463 MKPSPM 480 +P+ Sbjct: 122 FTATPI 127
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 111 bits (278), Expect = 9e-25 Identities = 54/126 (42%), Positives = 72/126 (57%) Frame = +1 Query: 103 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 282 KGPGL+T+IGKKA+DLL +DY D K KKG L+ DV + K Sbjct: 2 KGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKN 61 Query: 283 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 462 KN D+KVDT SN+ TT+TV + P K + S + PD +GK+EVQY HD +VG Sbjct: 62 KNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVG 121 Query: 463 MKPSPM 480 + +P+ Sbjct: 122 LTANPI 127
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 111 bits (277), Expect = 1e-24 Identities = 55/126 (43%), Positives = 72/126 (57%) Frame = +1 Query: 103 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 282 KGPGL++DIGKKA+DLL RDY D K KKG L+ DV++ K Sbjct: 2 KGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKN 61 Query: 283 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 462 KN DVKVDT SN+ TT+TV + P K + S PD +GKVE+QY H+ ++G Sbjct: 62 KNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIG 121 Query: 463 MKPSPM 480 + SP+ Sbjct: 122 LTASPL 127
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 100 bits (248), Expect = 3e-21 Identities = 50/125 (40%), Positives = 70/125 (56%) Frame = +1 Query: 106 GPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKYK 285 GPGL+ +IGKKA+DLL RDY D K KK L ++ S K K Sbjct: 2 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNK 61 Query: 286 NTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVGM 465 N VDVK +++SN+ TT+TV ++ P K + S PD +GK E+QY HD +A++G+ Sbjct: 62 NITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGL 121 Query: 466 KPSPM 480 SP+ Sbjct: 122 TASPV 126
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 97.8 bits (242), Expect = 1e-20 Identities = 50/125 (40%), Positives = 69/125 (55%) Frame = +1 Query: 103 KGPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKY 282 KGPGL+T+IGKKA+DLL +D+ DQK KKG L DVA + Sbjct: 2 KGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRR 61 Query: 283 KNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 462 KN D+KV T+S T TV + P + + S K PD N+GKVE+QY H+ + ++G Sbjct: 62 KNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMG 121 Query: 463 MKPSP 477 + +P Sbjct: 122 LTQNP 126
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 95.9 bits (237), Expect = 5e-20 Identities = 51/126 (40%), Positives = 68/126 (53%), Gaps = 1/126 (0%) Frame = +1 Query: 106 GPGLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKYK 285 GPGL++ IGKKAKDLL RDY D K KK L ++ S K K Sbjct: 3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNK 62 Query: 286 NTLVDVKVDTESNISTTLTVLDV-LPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVG 462 N VDVK ++ SN+ TT+T D+ P K + S PD +GKVE+QY HD A++G Sbjct: 63 NITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIG 122 Query: 463 MKPSPM 480 + +P+ Sbjct: 123 LTANPV 128
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 78.2 bits (191), Expect = 1e-14 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Frame = +1 Query: 112 GLFTDIGKKAKDLLTRDYTYDQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYKYKNT 291 GL+TDIGKK +DLL +DY QK +K ++ + K K Sbjct: 6 GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKL 65 Query: 292 LVDVKVDTESNISTTLTVLDV-LPSTKLVTSVKFPDYNAGKVEVQYFHDKCTFAAAVGMK 468 VDVK ++ES++ TT+TV + P K + ++ PD +GK+E QY H+ A+VG+ Sbjct: 66 TVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLN 125 Query: 469 PSPM 480 +PM Sbjct: 126 SNPM 129
>ATS12_MOUSE (Q811B3) ADAMTS-12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 12) (ADAM-TS 12) (ADAM-TS12) Length = 1600 Score = 31.6 bits (70), Expect = 1.1 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 451 QQKCICHGSIAPPPFQHCNQET*QTSQAL 365 Q +C+C + PP FQ CNQ+ + S L Sbjct: 1515 QDQCLCDHQVKPPEFQTCNQQACRKSADL 1543
>VDAC_DROME (Q94920) Voltage-dependent anion-selective channel (Porin) (DmVDAC)| Length = 281 Score = 30.0 bits (66), Expect = 3.3 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 10/119 (8%) Frame = +1 Query: 109 PGLFTDIGKKAKDLLTRDYTY---DQKLXXXXXXXXXXXXXXXXXKKGGLYSLDVASAYK 279 P ++D+GK+A+D+ ++ Y + L ++ G + + YK Sbjct: 2 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYK 61 Query: 280 YKN---TLVDVKVDTESNISTTLTVLD-VLPSTKLVTSVKFPDYNA---GKVEVQYFHD 435 K+ TL + K +T++ + T + V D +L KL F + GK +V Y H+ Sbjct: 62 VKDYGLTLTE-KWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHE 119
>RHPN2_MOUSE (Q8BWR8) Rhophilin-2 (GTP-Rho-binding protein 2)| Length = 686 Score = 28.9 bits (63), Expect = 7.3 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +1 Query: 259 DVASAYKYKNTLVDVKVDTESNISTTLTVLDVLPSTKLVTSVKFPDYNAGKVEVQYFHDK 438 DV SA + L + + ++ + DVLP T+ + FPD++ KV V F K Sbjct: 441 DVLSAAHQRTQLKHTQHREDDDLLNLIDAPDVLPKTEREVKITFPDFS--KVTVTDFFQK 498 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,459,815 Number of Sequences: 219361 Number of extensions: 959850 Number of successful extensions: 2766 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2706 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2763 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
