| Clone Name | baet02c10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY823551.1| Pennisetum glaucum voltage dependent anion channel protein mRNA, complete cds Length = 1025 Score = 422 bits (213), Expect = e-115 Identities = 309/341 (90%) Strand = Plus / Plus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 153 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1 atggccatgaagggacccggcctcttctccgacatcggcaagaaggccaaggatctgctc 60 Query: 154 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 213 || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 acgagggactacacctacgaccagaagctgaccgtctccaccgtcagctcctccggagtg 120 Query: 214 gccgtcacttccacagctgtgaagaaaggagggctttattctcttgatgtagcttcagct 273 | | ||||||||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct: 121 ggcctcacttccacagctgtgaagaaaggagggctttatactcttgatgtcagttcagtt 180 Query: 274 tacaagtataagaatactcttgttgatgtcaaagtggatacagaatcaaatatctctact 333 |||||||| ||||||||| |||||||| | |||||||| || |||||||| ||||||||| Sbjct: 181 tacaagtacaagaatactgttgttgatattaaagtggacacggaatcaaacatctctact 240 Query: 334 acattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtcaagtttcct 393 || |||||||| ||||||| ||||||||||||||||||||||||||| || ||| | ||| Sbjct: 241 accttgactgtgttggatgccctgccatccacaaagcttgtgacgtcggtgaagctgcct 300 Query: 394 gattacaatgctggaaaggtggaggtgcaatacttccatga 434 || |||||| ||||||||||||| | || ||||||||||| Sbjct: 301 gactacaattctggaaaggtggaacttcattacttccatga 341
>gb|AF513381.1| Pennisetum glaucum PgPOR29 (PORIN) mRNA, complete cds; nuclear gene for mitochondrial product Length = 831 Score = 422 bits (213), Expect = e-115 Identities = 309/341 (90%) Strand = Plus / Plus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 153 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1 atggccatgaagggacccggcctcttctccgacatcggcaagaaggccaaggatctgctc 60 Query: 154 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 213 || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 acgagggactacacctacgaccagaagctgaccgtctccaccgtcagctcctccggagtg 120 Query: 214 gccgtcacttccacagctgtgaagaaaggagggctttattctcttgatgtagcttcagct 273 | | ||||||||||||||||||||||||||||||||||| |||||||||| ||||| | Sbjct: 121 ggcctcacttccacagctgtgaagaaaggagggctttatactcttgatgtcagttcagtt 180 Query: 274 tacaagtataagaatactcttgttgatgtcaaagtggatacagaatcaaatatctctact 333 |||||||| ||||||||| |||||||| | |||||||| || |||||||| ||||||||| Sbjct: 181 tacaagtacaagaatactgttgttgatattaaagtggacacggaatcaaacatctctact 240 Query: 334 acattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtcaagtttcct 393 || |||||||| ||||||| ||||||||||||||||||||||||||| || ||| | ||| Sbjct: 241 accttgactgtgttggatgccctgccatccacaaagcttgtgacgtcggtgaagctgcct 300 Query: 394 gattacaatgctggaaaggtggaggtgcaatacttccatga 434 || |||||| ||||||||||||| | || ||||||||||| Sbjct: 301 gactacaattctggaaaggtggaacttcattacttccatga 341
>gb|AY224468.1| Oryza sativa (japonica cultivar-group) isolate 24162 porin-like protein mRNA, complete cds Length = 834 Score = 400 bits (202), Expect = e-108 Identities = 309/342 (90%), Gaps = 2/342 (0%) Strand = Plus / Plus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 153 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||| Sbjct: 1 atggccatgaagggacccggcctcttctccgacattggcaagagggccaaggatctgctc 60 Query: 154 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 213 |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 61 accaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcctccggagtg 120 Query: 214 gccgtcacttccacagctgtgaagaaaggagggctttattctcttgatgt-agcttcagc 272 | | ||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||| Sbjct: 121 ggcctcacttccacagctgtgaagaaaggggggctttatactcttgatgtcagc-tcagt 179 Query: 273 ttacaagtataagaatactcttgttgatgtcaaagtggatacagaatcaaatatctctac 332 ||||||||| |||| |||||| || |||||||||||||| |||||||| ||||||||||| Sbjct: 180 ttacaagtacaagagtactctcgtcgatgtcaaagtggacacagaatctaatatctctac 239 Query: 333 tacattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtcaagtttcc 392 ||| |||||||| || |||||||| |||||||||||||||||||| ||||||| | || Sbjct: 240 tactttgactgtgtttgatgtccttccatccacaaagcttgtgacaagtgtcaagctgcc 299 Query: 393 tgattacaatgctggaaaggtggaggtgcaatacttccatga 434 ||| |||||| |||||||||||||| |||||||||||||||| Sbjct: 300 tgactacaattctggaaaggtggagatgcaatacttccatga 341
>dbj|AK121020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049E21, full insert sequence Length = 1265 Score = 400 bits (202), Expect = e-108 Identities = 309/342 (90%), Gaps = 2/342 (0%) Strand = Plus / Plus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctc 153 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||| Sbjct: 129 atggccatgaagggacccggcctcttctccgacattggcaagagggccaaggatctgctc 188 Query: 154 accagggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 213 |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 189 accaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcctccggagtg 248 Query: 214 gccgtcacttccacagctgtgaagaaaggagggctttattctcttgatgt-agcttcagc 272 | | ||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||| Sbjct: 249 ggcctcacttccacagctgtgaagaaaggggggctttatactcttgatgtcagc-tcagt 307 Query: 273 ttacaagtataagaatactcttgttgatgtcaaagtggatacagaatcaaatatctctac 332 ||||||||| |||| |||||| || |||||||||||||| |||||||| ||||||||||| Sbjct: 308 ttacaagtacaagagtactctcgtcgatgtcaaagtggacacagaatctaatatctctac 367 Query: 333 tacattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtcaagtttcc 392 ||| |||||||| || |||||||| |||||||||||||||||||| ||||||| | || Sbjct: 368 tactttgactgtgtttgatgtccttccatccacaaagcttgtgacaagtgtcaagctgcc 427 Query: 393 tgattacaatgctggaaaggtggaggtgcaatacttccatga 434 ||| |||||| |||||||||||||| |||||||||||||||| Sbjct: 428 tgactacaattctggaaaggtggagatgcaatacttccatga 469
>gb|AY105200.1| Zea mays PCO141157 mRNA sequence Length = 1411 Score = 329 bits (166), Expect = 5e-87 Identities = 295/338 (87%) Strand = Plus / Plus Query: 97 gccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcacc 156 |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| Sbjct: 245 gccatgaagggacccggcctcttctccgacatcggcaagaaggccaaggatctactcagt 304 Query: 157 agggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtggcc 216 | ||||||||| |||||||||||||| || ||||||||| |||| |||| ||| ||| | Sbjct: 305 aaggactacacttacgaccagaagctgaccatctccaccgccagcgcctctggactgggc 364 Query: 217 gtcacttccacagctgtgaagaaaggagggctttattctcttgatgtagcttcagcttac 276 | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 365 ctgacttccacagctgtgaagaaaggagggctttattctcttgatgtcagttcagtttac 424 Query: 277 aagtataagaatactcttgttgatgtcaaagtggatacagaatcaaatatctctactaca 336 ||||| |||||||| ||||||||| |||||||| || ||||||||||||||||||||| Sbjct: 425 aagtacaagaataccactgttgatgttaaagtggacactgaatcaaatatctctactaca 484 Query: 337 ttgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtcaagtttcctgat 396 ||||| || ||||| | | |||||| |||||||||||| || ||||| ||| | ||||| Sbjct: 485 ttgaccgtgttggacgccttgccatgcacaaagcttgtcacttctgtgaagctgcctgac 544 Query: 397 tacaatgctggaaaggtggaggtgcaatacttccatga 434 |||||| ||||||||||||| |||||||||||||||| Sbjct: 545 tacaattatggaaaggtggagctgcaatacttccatga 582
>gb|AY823552.1| Pennisetum glaucum voltage dependent anion channel protein gene, complete cds Length = 2967 Score = 123 bits (62), Expect = 6e-25 Identities = 95/106 (89%) Strand = Plus / Plus Query: 218 tcacttccacagctgtgaagaaaggagggctttattctcttgatgtagcttcagcttaca 277 ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| Sbjct: 1996 tcacttccacagctgtgaagaaaggagggctttatactcttgatgtcagttcagtttaca 2055 Query: 278 agtataagaatactcttgttgatgtcaaagtggatacagaatcaaa 323 |||| ||||||||| |||||||| | |||||||| || |||||||| Sbjct: 2056 agtacaagaatactgttgttgatattaaagtggacacggaatcaaa 2101 Score = 115 bits (58), Expect = 1e-22 Identities = 67/70 (95%) Strand = Plus / Plus Query: 145 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 204 ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 145 gatctgctcacgagggactacacctacgaccagaagctgaccgtctccaccgtcagctcc 204 Query: 205 tccggagtgg 214 |||||||||| Sbjct: 205 tccggagtgg 214 Score = 105 bits (53), Expect = 1e-19 Identities = 80/89 (89%) Strand = Plus / Plus Query: 325 atctctactacattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtc 384 ||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||| || Sbjct: 2195 atctctactaccttgactgtgttggatgccctgccatccacaaagcttgtgacgtcggtg 2254 Query: 385 aagtttcctgattacaatgctggaaaggt 413 ||| | ||||| |||||| |||||||||| Sbjct: 2255 aagctgcctgactacaattctggaaaggt 2283 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 145 ||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct: 1 atggccatgaagggacccggcctcttctccgacatcggcaagaaggccaagg 52
>gb|AY104040.1| Zea mays PCO141155 mRNA sequence Length = 973 Score = 115 bits (58), Expect = 1e-22 Identities = 103/117 (88%), Gaps = 2/117 (1%) Strand = Plus / Plus Query: 97 gccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcacc 156 |||||||||||||| ||||||||| |||||||||||| ||||| |||||||| |||| Sbjct: 157 gccatgaagggacccggcctcttctccgacatcggcaggaagg--aaggatctactcatt 214 Query: 157 agggactacacctacgaccagaagctctccgtctccaccgtcagctcctccggagtg 213 | |||||||||||||||||||||||| ||| ||||||||| |||| |||| |||||| Sbjct: 215 aaggactacacctacgaccagaagctgtccatctccaccgccagcgcctctggagtg 271
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 2e-21 Identities = 94/104 (90%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 218 tcacttccacagctgtgaagaaaggagggctttattctcttgatgt-agcttcagcttac 276 ||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||| |||| Sbjct: 5317836 tcacttccacagctgtgaagaaaggggggctttatactcttgatgtcagc-tcagtttac 5317778 Query: 277 aagtataagaatactcttgttgatgtcaaagtggatacagaatc 320 ||||| |||| |||||| || |||||||||||||| |||||||| Sbjct: 5317777 aagtacaagagtactctcgtcgatgtcaaagtggacacagaatc 5317734 Score = 107 bits (54), Expect = 3e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 145 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 204 ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 5319935 gatctgctcaccaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcc 5319876 Query: 205 tccggagtgg 214 |||||||||| Sbjct: 5319875 tccggagtgg 5319866 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 325 atctctactacattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtc 384 ||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||| Sbjct: 5317644 atctctactactttgactgtgtttgatgtccttccatccacaaagcttgtgacaagtgtc 5317585 Query: 385 aagtttcctgattacaatgctggaaaggt 413 ||| | ||||| |||||| |||||||||| Sbjct: 5317584 aagctgcctgactacaattctggaaaggt 5317556 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 145 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 5320105 atggccatgaagggacccggcctcttctccgacattggcaagagggccaagg 5320054 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 aggtggaggtgcaatacttccatga 434 |||||||| |||||||||||||||| Sbjct: 5317492 aggtggagatgcaatacttccatga 5317468
>gb|AC146702.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009J13, from chromosome 3, complete sequence Length = 147205 Score = 111 bits (56), Expect = 2e-21 Identities = 94/104 (90%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 218 tcacttccacagctgtgaagaaaggagggctttattctcttgatgt-agcttcagcttac 276 ||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||| |||| Sbjct: 24004 tcacttccacagctgtgaagaaaggggggctttatactcttgatgtcagc-tcagtttac 23946 Query: 277 aagtataagaatactcttgttgatgtcaaagtggatacagaatc 320 ||||| |||| |||||| || |||||||||||||| |||||||| Sbjct: 23945 aagtacaagagtactctcgtcgatgtcaaagtggacacagaatc 23902 Score = 107 bits (54), Expect = 3e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 145 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 204 ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 26103 gatctgctcaccaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcc 26044 Query: 205 tccggagtgg 214 |||||||||| Sbjct: 26043 tccggagtgg 26034 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 325 atctctactacattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtc 384 ||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||| Sbjct: 23812 atctctactactttgactgtgtttgatgtccttccatccacaaagcttgtgacaagtgtc 23753 Query: 385 aagtttcctgattacaatgctggaaaggt 413 ||| | ||||| |||||| |||||||||| Sbjct: 23752 aagctgcctgactacaattctggaaaggt 23724 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 145 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 26273 atggccatgaagggacccggcctcttctccgacattggcaagagggccaagg 26222 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 aggtggaggtgcaatacttccatga 434 |||||||| |||||||||||||||| Sbjct: 23660 aggtggagatgcaatacttccatga 23636
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 2e-21 Identities = 94/104 (90%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 218 tcacttccacagctgtgaagaaaggagggctttattctcttgatgt-agcttcagcttac 276 ||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||| |||| Sbjct: 5317051 tcacttccacagctgtgaagaaaggggggctttatactcttgatgtcagc-tcagtttac 5316993 Query: 277 aagtataagaatactcttgttgatgtcaaagtggatacagaatc 320 ||||| |||| |||||| || |||||||||||||| |||||||| Sbjct: 5316992 aagtacaagagtactctcgtcgatgtcaaagtggacacagaatc 5316949 Score = 107 bits (54), Expect = 3e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 145 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 204 ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 5319150 gatctgctcaccaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcc 5319091 Query: 205 tccggagtgg 214 |||||||||| Sbjct: 5319090 tccggagtgg 5319081 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 325 atctctactacattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtc 384 ||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||| Sbjct: 5316859 atctctactactttgactgtgtttgatgtccttccatccacaaagcttgtgacaagtgtc 5316800 Query: 385 aagtttcctgattacaatgctggaaaggt 413 ||| | ||||| |||||| |||||||||| Sbjct: 5316799 aagctgcctgactacaattctggaaaggt 5316771 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 145 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 5319320 atggccatgaagggacccggcctcttctccgacattggcaagagggccaagg 5319269 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 aggtggaggtgcaatacttccatga 434 |||||||| |||||||||||||||| Sbjct: 5316707 aggtggagatgcaatacttccatga 5316683
>gb|AC104429.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0006P09, complete sequence Length = 153950 Score = 111 bits (56), Expect = 2e-21 Identities = 94/104 (90%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 218 tcacttccacagctgtgaagaaaggagggctttattctcttgatgt-agcttcagcttac 276 ||||||||||||||||||||||||| ||||||||| |||||||||| ||| |||| |||| Sbjct: 38985 tcacttccacagctgtgaagaaaggggggctttatactcttgatgtcagc-tcagtttac 38927 Query: 277 aagtataagaatactcttgttgatgtcaaagtggatacagaatc 320 ||||| |||| |||||| || |||||||||||||| |||||||| Sbjct: 38926 aagtacaagagtactctcgtcgatgtcaaagtggacacagaatc 38883 Score = 107 bits (54), Expect = 3e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 145 gatctgctcaccagggactacacctacgaccagaagctctccgtctccaccgtcagctcc 204 ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 41021 gatctgctcaccaaggactacacctatgaccagaagctgaccgtctccaccgtcagctcc 40962 Query: 205 tccggagtgg 214 |||||||||| Sbjct: 40961 tccggagtgg 40952 Score = 89.7 bits (45), Expect = 8e-15 Identities = 78/89 (87%) Strand = Plus / Minus Query: 325 atctctactacattgactgtcttggatgtcctgccatccacaaagcttgtgacgtctgtc 384 ||||||||||| |||||||| || |||||||| |||||||||||||||||||| |||| Sbjct: 38793 atctctactactttgactgtgtttgatgtccttccatccacaaagcttgtgacaagtgtc 38734 Query: 385 aagtttcctgattacaatgctggaaaggt 413 ||| | ||||| |||||| |||||||||| Sbjct: 38733 aagctgcctgactacaattctggaaaggt 38705 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 94 atggccatgaagggaccgggcctcttcaccgacatcggcaagaaggccaagg 145 ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||| Sbjct: 41191 atggccatgaagggacccggcctcttctccgacattggcaagagggccaagg 41140 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 aggtggaggtgcaatacttccatga 434 |||||||| |||||||||||||||| Sbjct: 38641 aggtggagatgcaatacttccatga 38617
>emb|X82148.1|TAVDAC3 T.aestivum VDAC3 mRNA for voltage dependent anion channel Length = 1208 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 109 ccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 165 |||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||| Sbjct: 85 ccgggcctctacaccgacatcggcaagaagaccagagatctgctctacagggactac 141
>emb|X82149.1|TAVDAC2 T.aestivum VDAC2 mRNA for voltage dependent anion channel Length = 1174 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 125 acatcggcaagaaggccaaggatctgctcaccagggactacacc 168 |||||||||||||||||| ||||| |||| ||||||||||||| Sbjct: 17 acatcggcaagaaggccagagatctcctcaacagggactacacc 60
>gb|BT016491.1| Zea mays clone Contig324 mRNA sequence Length = 1330 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 106 ggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||| ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 159 ggaccaggcctctacaccgagatcggcaagaagaccagggatctgct 205
>gb|AF178951.1|AF178951 Zea mays voltage-dependent anion channel protein 1b (vdac1b) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1175 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 106 ggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||| ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 154 ggaccaggcctctacaccgagatcggcaagaagaccagggatctgct 200
>gb|AF093538.1|AF093538 Zea mays voltage-dependent anion-selective channel protein mRNA, partial cds Length = 321 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 106 ggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||| ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 7 ggaccaggcctctacaccgagatcggcaagaagaccagggatctgct 53
>gb|BT016888.1| Zea mays clone Contig721 mRNA sequence Length = 1209 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 112 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 1088 ggcctctacaccgagatcggcaagaagaccagggatctgct 1048
>gb|AY316740.1| Lotus corniculatus var. japonicus VDAC2.1 mRNA, complete cds Length = 1108 Score = 50.1 bits (25), Expect = 0.007 Identities = 115/145 (79%) Strand = Plus / Plus Query: 106 ggaccgggcctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 165 ||||| || |||||| |||| ||||||||||| ||| ||||| | |||| ||||||| Sbjct: 20 ggaccaggtctcttctccgatatcggcaagaaacccagagatcttttgaccaaggactac 79 Query: 166 acctacgaccagaagctctccgtctccaccgtcagctcctccggagtggccgtcacttcc 225 | || ||| ||||| ||| |||| || || |||| || ||||||||||| | ||||| Sbjct: 80 agctccgatcagaaactcaccgtttcttcctacagcaccgccggagtggcccttacttca 139 Query: 226 acagctgtgaagaaaggagggcttt 250 || |||||||| |||||||| |||| Sbjct: 140 actgctgtgaaaaaaggaggacttt 164 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 391 cctgattacaatgctggaaaggtggaggtgcaatacttccatgac 435 |||||||| ||| |||| ||| | ||||| ||||||||||||||| Sbjct: 305 cctgattataattctggcaagttagaggttcaatacttccatgac 349 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 274 tacaagtataagaatactcttgttgatgtcaaa 306 |||||||||||||| || ||| ||||||||||| Sbjct: 188 tacaagtataagaacacccttattgatgtcaaa 220
>emb|X73429.1|ZMPOR1 Z.mays mRNA for porin Length = 1810 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 112 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||||| ||||||||||||||||||| ||| |||||||| Sbjct: 21 ggcctctacaccgacatcggcaagaagaccagagatctgct 61
>gb|AF178950.1|AF178950 Zea mays voltage-dependent anion channel protein 1a (vdac1a) mRNA, complete cds; nuclear gene for mitochondrial product Length = 1179 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 112 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 105 ggcctctacaccgagatcggcaagaagaccagggatctgct 145
>gb|AY109870.1| Zea mays CL2099_1 mRNA sequence Length = 1799 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 112 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||||| ||||||||||||||||||| ||| |||||||| Sbjct: 21 ggcctctacaccgacatcggcaagaagaccagagatctgct 61
>gb|AY106124.1| Zea mays PCO123686 mRNA sequence Length = 926 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 112 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||||| ||||||||||||||||||| ||| |||||||| Sbjct: 141 ggcctctacaccgacatcggcaagaagaccagagatctgct 181
>gb|AY104870.1| Zea mays PCO081914 mRNA sequence Length = 1445 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 112 ggcctcttcaccgacatcggcaagaaggccaaggatctgct 152 ||||||| |||||| |||||||||||| ||| ||||||||| Sbjct: 216 ggcctctacaccgagatcggcaagaagaccagggatctgct 256
>ref|NM_126150.2| Arabidopsis thaliana voltage-gated ion-selective channel AT5G67500 mRNA, complete cds Length = 1251 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctg 150 ||||||||||| ||||||||||| ||||| |||||| Sbjct: 79 ctcttcaccgatatcggcaagaaagccaaagatctg 114
>emb|BX831892.1|CNS09ZOZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH37ZD11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1000 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctg 150 ||||||||||| ||||||||||| ||||| |||||| Sbjct: 60 ctcttcaccgatatcggcaagaaagccaaagatctg 95
>gb|AY085100.1| Arabidopsis thaliana clone 12964 mRNA, complete sequence Length = 1106 Score = 48.1 bits (24), Expect = 0.027 Identities = 33/36 (91%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctg 150 ||||||||||| ||||||||||| ||||| |||||| Sbjct: 79 ctcttcaccgatatcggcaagaaagccaaagatctg 114
>ref|XM_450604.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1124 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 127 atcggcaagaaggccaaggatctgctcaccagggactac 165 |||||||||||||||| ||||||||| |||||||||| Sbjct: 117 atcggcaagaaggccagggatctgctgtacagggactac 155
>ref|NM_192554.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 828 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 165 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 13 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 63
>gb|BT014367.1| Lycopersicon esculentum clone 133653F, mRNA sequence Length = 1204 Score = 46.1 bits (23), Expect = 0.11 Identities = 38/43 (88%) Strand = Plus / Plus Query: 274 tacaagtataagaatactcttgttgatgtcaaagtggatacag 316 ||||| |||||||||||| | ||||||||||||| ||||||| Sbjct: 254 tacaaatataagaatactttaattgatgtcaaagttgatacag 296
>emb|AJ251563.1|OSA251563 Oryza sativa mRNA for voltage-dependent anion channel (VDAC3 gene) Length = 1148 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 165 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 86 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 136
>emb|Y18104.1|OSA18104 Oryza sativa mRNA for voltage-dependent anion channel Length = 1093 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 127 atcggcaagaaggccaaggatctgctcaccagggactac 165 |||||||||||||||| ||||||||| |||||||||| Sbjct: 54 atcggcaagaaggccagggatctgctgtacagggactac 92
>dbj|AK104419.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B06, full insert sequence Length = 1151 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 165 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 91 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 141
>dbj|AK104055.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B09, full insert sequence Length = 1160 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 165 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 102 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 152
>dbj|AK072129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126C04, full insert sequence Length = 3071 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 127 atcggcaagaaggccaaggatctgctcaccagggactac 165 |||||||||||||||| ||||||||| |||||||||| Sbjct: 111 atcggcaagaaggccagggatctgctgtacagggactac 149
>dbj|AK070745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023068C08, full insert sequence Length = 1216 Score = 46.1 bits (23), Expect = 0.11 Identities = 44/51 (86%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctgctcaccagggactac 165 |||| ||||||||||||||||||| ||| |||||||| |||||||||| Sbjct: 146 ctctacaccgacatcggcaagaagaccagagatctgctttacagggactac 196
>dbj|AK061261.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C01, full insert sequence Length = 1125 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 127 atcggcaagaaggccaaggatctgctcaccagggactac 165 |||||||||||||||| ||||||||| |||||||||| Sbjct: 117 atcggcaagaaggccagggatctgctgtacagggactac 155
>dbj|AK060652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H05, full insert sequence Length = 1242 Score = 46.1 bits (23), Expect = 0.11 Identities = 35/39 (89%) Strand = Plus / Plus Query: 127 atcggcaagaaggccaaggatctgctcaccagggactac 165 |||||||||||||||| ||||||||| |||||||||| Sbjct: 131 atcggcaagaaggccagggatctgctgtacagggactac 169
>emb|X77733.1|TAVDAC1 T.aestivum VDAC 1 mRNA Length = 1159 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 127 atcggcaagaaggccaaggatct 149 ||||||||||||||||||||||| Sbjct: 79 atcggcaagaaggccaaggatct 101
>gb|AY316737.1| Lotus corniculatus var. japonicus VDAC1.1 mRNA, complete cds Length = 1203 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctgct 152 |||| ||| |||||||||||||| |||| ||||||||| Sbjct: 98 ctctacactgacatcggcaagaaagccagggatctgct 135 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 404 ctggaaaggtggaggtgcaatacttccatgac 435 |||||||||||||| | |||||||| |||||| Sbjct: 387 ctggaaaggtggagcttcaatacttgcatgac 418
>gb|AC132304.3| Mus musculus BAC clone RP24-284M17 from 10, complete sequence Length = 191906 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2 atctctctctgaccctctccac 23 |||||||||||||||||||||| Sbjct: 54879 atctctctctgaccctctccac 54858
>ref|XM_446420.1| Candida glabrata CBS138, CAGL0G01342g partial mRNA Length = 3231 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tctccgtctccaccgtcagct 202 ||||||||||||||||||||| Sbjct: 37 tctccgtctccaccgtcagct 17
>gb|AC123065.3| Mus musculus BAC clone RP23-239F13 from 9, complete sequence Length = 158137 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 234 gaagaaaggagggctttattctctt 258 ||||||||||||||||| ||||||| Sbjct: 25411 gaagaaaggagggctttcttctctt 25435
>gb|AC146856.8| Medicago truncatula clone mth2-16l23, complete sequence Length = 145382 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 274 tacaagtataagaatactcttgttgatgtcaaa 306 |||||||||||||| || ||| ||||||||||| Sbjct: 124031 tacaagtataagaacacccttattgatgtcaaa 124063 Score = 42.1 bits (21), Expect = 1.6 Identities = 36/41 (87%) Strand = Plus / Plus Query: 103 aagggaccgggcctcttcaccgacatcggcaagaaggccaa 143 ||||||||||| |||| | |||| ||||||||||| ||||| Sbjct: 122049 aagggaccgggtctctactccgatatcggcaagaaagccaa 122089
>emb|AL390791.15| Human DNA sequence from clone RP11-204A14 on chromosome 9, complete sequence Length = 177425 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 400 aatgctggaaaggtggaggtg 420 ||||||||||||||||||||| Sbjct: 68745 aatgctggaaaggtggaggtg 68725
>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence Length = 992211 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 tctccgtctccaccgtcagct 202 ||||||||||||||||||||| Sbjct: 129374 tctccgtctccaccgtcagct 129394
>gb|AC104798.4| Homo sapiens BAC clone RP11-328N8 from 4, complete sequence Length = 132337 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 tcttgatgtagcttcagctta 275 ||||||||||||||||||||| Sbjct: 3618 tcttgatgtagcttcagctta 3598
>gb|AC009995.9|AC009995 Homo sapiens chromosome 8, clone RP11-373H15, complete sequence Length = 174037 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctctgaccctctccacccttt 28 ||||||||||||||||||||| Sbjct: 130519 ctctgaccctctccacccttt 130499
>emb|BX890584.6| Mouse DNA sequence from clone RP23-160I11 on chromosome X, complete sequence Length = 120359 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 ataagaatactcttgttgatg 301 ||||||||||||||||||||| Sbjct: 25408 ataagaatactcttgttgatg 25428
>gb|AC103831.4| Homo sapiens chromosome 8, clone RP11-1023P17, complete sequence Length = 206357 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ctctgaccctctccacccttt 28 ||||||||||||||||||||| Sbjct: 1845 ctctgaccctctccacccttt 1865
>dbj|AB013390.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9I9 Length = 51860 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaa 143 ||||||||||| ||||||||||| ||||| Sbjct: 14407 ctcttcaccgatatcggcaagaaagccaa 14435
>gb|AC147636.3| Mus musculus BAC clone RP23-201C3 from 9, complete sequence Length = 202197 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 234 gaagaaaggagggctttattctctt 258 ||||||||||||||||| ||||||| Sbjct: 5082 gaagaaaggagggctttcttctctt 5106
>emb|AL133445.4|CNS01DV1 Human chromosome 14 DNA sequence BAC R-1046B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 190946 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 tctctgaccctctccaccctt 27 ||||||||||||||||||||| Sbjct: 153167 tctctgaccctctccaccctt 153187
>ref|XM_629602.1| Dictyostelium discoideum hypothetical protein (DDB0219746), partial mRNA Length = 1020 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 aatactcttgttgatgtcaaagtg 309 ||||||||||||||||| |||||| Sbjct: 382 aatactcttgttgatgtaaaagtg 359
>gb|AC150847.5| Bos taurus BAC CH240-372I17 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 134331 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 acaatgctggaaaggtggag 417 |||||||||||||||||||| Sbjct: 127756 acaatgctggaaaggtggag 127775
>gb|AC008325.5| Drosophila melanogaster clone BACR05M06, complete sequence Length = 166423 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cttttgctgccgccgttggc 462 |||||||||||||||||||| Sbjct: 122166 cttttgctgccgccgttggc 122147
>gb|AC140845.2| Mus musculus BAC clone RP24-386C13 from chromosome 8, complete sequence Length = 153426 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 acgtctgtcaagtttcctga 395 |||||||||||||||||||| Sbjct: 21767 acgtctgtcaagtttcctga 21786
>ref|XM_954597.1| Neurospora crassa OR74A hypothetical protein (NCU09579.1) partial mRNA Length = 1062 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ccaccgtcagctcctccgga 210 |||||||||||||||||||| Sbjct: 751 ccaccgtcagctcctccgga 732
>ref|XM_329937.1| Neurospora crassa OR74A hypothetical protein (NCU09579.1) partial mRNA Length = 1062 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ccaccgtcagctcctccgga 210 |||||||||||||||||||| Sbjct: 751 ccaccgtcagctcctccgga 732
>gb|BC063664.1| Homo sapiens DNA2 DNA replication helicase 2-like (yeast), mRNA (cDNA clone IMAGE:3846907), partial cds Length = 3484 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tggatacagaatcaaatatc 327 |||||||||||||||||||| Sbjct: 385 tggatacagaatcaaatatc 366
>gb|AC124536.4| Mus musculus BAC clone RP23-332H4 from chromosome 3, complete sequence Length = 165047 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tccacagctgtgaagaaagg 242 |||||||||||||||||||| Sbjct: 155884 tccacagctgtgaagaaagg 155865
>ref|XM_764947.1| Giardia lamblia ATCC 50803 pyruvate ferredoxin oxidoreductase (GLP_77_30661_27062) partial mRNA Length = 3600 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 aggccaaggatctgctcacc 156 |||||||||||||||||||| Sbjct: 2915 aggccaaggatctgctcacc 2934
>gb|AC003078.1| Homo sapiens BAC clone GS1-117O10 from 7, complete sequence Length = 182433 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 acttccacagctgtgaagaaagga 243 |||| ||||||||||||||||||| Sbjct: 109917 acttacacagctgtgaagaaagga 109894
>gb|AC142298.1| Pan troglodytes BAC clone RP43-99N14 from 7, complete sequence Length = 162900 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 acttccacagctgtgaagaaagga 243 |||| ||||||||||||||||||| Sbjct: 95008 acttacacagctgtgaagaaagga 94985
>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence Length = 117113 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 agtataagaatactcttgtt 297 |||||||||||||||||||| Sbjct: 45538 agtataagaatactcttgtt 45557
>emb|AL136233.14| Human DNA sequence from clone RP11-9E13 on chromosome 10 Contains the 5' end of the RUFY2 gene for RUN and FYVE domain containing 2 (FLJ36895, FLJ10063), the DNA2L gene for DNA2 DNA replication helicase 2-like (yeast) (KIAA0083), a ribosomal protein L26 (RPL26) pseudogene, a novel gene and two CpG islands, complete sequence Length = 138733 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 tggatacagaatcaaatatc 327 |||||||||||||||||||| Sbjct: 124171 tggatacagaatcaaatatc 124190
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 acacctacgaccagaagctc 183 |||||||||||||||||||| Sbjct: 211083 acacctacgaccagaagctc 211102
>emb|AJ301641.1|FRU301641 Fugu rubripes ORF1 (partial), ORF2-4 DNA and lsm4 gene Length = 36154 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 ctctccgtctccaccgtcagctcc 204 |||||| ||||||||||||||||| Sbjct: 1582 ctctccttctccaccgtcagctcc 1605
>dbj|D42046.1|HUMKIAAJ Homo sapiens KIAA0083 mRNA, partial cds Length = 4207 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tggatacagaatcaaatatc 327 |||||||||||||||||||| Sbjct: 414 tggatacagaatcaaatatc 395
>emb|CR606021.1| full-length cDNA clone CS0DL001YM13 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2414 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tggatacagaatcaaatatc 327 |||||||||||||||||||| Sbjct: 107 tggatacagaatcaaatatc 88
>ref|XM_938629.1| PREDICTED: Homo sapiens DNA2 DNA replication helicase 2-like (yeast) (DNA2L), mRNA Length = 4410 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tggatacagaatcaaatatc 327 |||||||||||||||||||| Sbjct: 621 tggatacagaatcaaatatc 602
>ref|XM_166103.6| PREDICTED: Homo sapiens DNA2 DNA replication helicase 2-like (yeast) (DNA2L), mRNA Length = 4410 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tggatacagaatcaaatatc 327 |||||||||||||||||||| Sbjct: 621 tggatacagaatcaaatatc 602
>gb|DQ058201.1| Trifolium pratense clone tp44 microsatellite sequence Length = 275 Score = 40.1 bits (20), Expect = 6.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 103 aagggaccgggcctcttcaccgacatcggcaagaaggcca 142 ||||||||||| |||| | |||| ||||||||||| |||| Sbjct: 133 aagggaccgggtctctactccgatatcggcaagaaagcca 94
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ctcttcaccgacatcggcaagaag 138 |||| ||||||||||||||||||| Sbjct: 22906641 ctctacaccgacatcggcaagaag 22906618
>emb|BX841617.1|CNS09YKR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB22ZF03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1039 Score = 40.1 bits (20), Expect = 6.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaagaaggccaaggatctg 150 ||||||||||| |||||||||| ||||| |||||| Sbjct: 38 ctcttcaccgatatcggcaagatagccaaagatctg 73
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 ctcttcaccgacatcggcaagaag 138 |||| ||||||||||||||||||| Sbjct: 110198 ctctacaccgacatcggcaagaag 110175
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ctcttcaccgacatcggcaa 134 |||||||||||||||||||| Sbjct: 2685151 ctcttcaccgacatcggcaa 2685170
>gb|AE003609.4| Drosophila melanogaster chromosome 2L, section 18 of 83 of the complete sequence Length = 319287 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 cttttgctgccgccgttggc 462 |||||||||||||||||||| Sbjct: 232405 cttttgctgccgccgttggc 232386
>gb|AC102632.8| Mus musculus chromosome 5, clone RP23-286C5, complete sequence Length = 200020 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 cacttccacagctgtgaaga 238 |||||||||||||||||||| Sbjct: 107570 cacttccacagctgtgaaga 107589
>gb|AC099722.7| Mus musculus chromosome 3, clone RP23-282E13, complete sequence Length = 233425 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tccacagctgtgaagaaagg 242 |||||||||||||||||||| Sbjct: 50831 tccacagctgtgaagaaagg 50812
>gb|BC111740.1| Homo sapiens DNA2 DNA replication helicase 2-like (yeast), mRNA (cDNA clone MGC:133297 IMAGE:40038149), complete cds Length = 3207 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 tggatacagaatcaaatatc 327 |||||||||||||||||||| Sbjct: 452 tggatacagaatcaaatatc 433
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 ctacgaccagaagctctccg 187 |||||||||||||||||||| Sbjct: 1976233 ctacgaccagaagctctccg 1976214
>gb|AC117544.8| Mus musculus chromosome 8, clone RP23-99L5, complete sequence Length = 179585 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 acgtctgtcaagtttcctga 395 |||||||||||||||||||| Sbjct: 24935 acgtctgtcaagtttcctga 24916
>emb|AL671478.9| Mouse DNA sequence from clone RP23-110A15 on chromosome X, complete sequence Length = 208695 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 agaaaggagggctttattct 255 |||||||||||||||||||| Sbjct: 179940 agaaaggagggctttattct 179921 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,838,724 Number of Sequences: 3902068 Number of extensions: 3838724 Number of successful extensions: 71906 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71673 Number of HSP's gapped (non-prelim): 225 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)