ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet02b05 |
|---|---|
| Clone Library Name | barley_pub |
>FLP1_SCHPO (Q9P7H1) Tyrosine-protein phosphatase CDC14 homolog (EC 3.1.3.48)| (CDC fourteen-like phosphatase 1) Length = 537 Score = 33.9 bits (76), Expect = 0.25 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 9/58 (15%) Frame = -3 Query: 452 SPTSTPLIXRRSRT---------GTWSPCSTPGGSPWRRTAGGHGYTGTSRHAVTASR 306 +PT T + R R+ G SP S+P GSP RRT+G +G+S +A R Sbjct: 453 TPTETISVVRLRRSSSQSNIEPNGVRSPTSSPTGSPIRRTSGNRWSSGSSHSKKSAQR 510
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 31.6 bits (70), Expect = 1.2 Identities = 13/45 (28%), Positives = 25/45 (55%) Frame = -1 Query: 316 PLLEVEPVVGGRRKLAVSDDGASEVDVQRVQEPLPRVRAVELAPP 182 P LE++P++ + ++ G E + + + EP P ++A L PP Sbjct: 205 PALEIKPMLQAQESPSLPAPGPPEPEEEPIPEPQPTIQASSLPPP 249
>SF3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = -3 Query: 497 PTVARRARWSPLARMSPTSTPLIXRRSRTGTWSPCSTPGGSP---WRRTAG 354 P R+ RW A +P +TP + +W TPG +P W T G Sbjct: 192 PPSKRKRRWDQTADQTPGATP-----KKLSSWDQAETPGHTPSLRWDETPG 237
>SF3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Frame = -3 Query: 497 PTVARRARWSPLARMSPTSTPLIXRRSRTGTWSPCSTPGGSP---WRRTAG 354 P R+ RW A +P +TP + +W TPG +P W T G Sbjct: 192 PPSKRKRRWDQTADQTPGATP-----KKLSSWDQAETPGHTPSLRWDETPG 237
>GST1_SCHPO (Q9Y7Q2) Glutathione S-transferase I (EC 2.5.1.18) (GST-I)| Length = 229 Score = 30.4 bits (67), Expect = 2.8 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 22/107 (20%) Frame = +2 Query: 185 WRELHGSDSWKGLLDPLDVDL----RRSIIAYGELASAAHDGFNLEKRSPHA-------- 328 W HG + WK + ++DL R + E S H N R P Sbjct: 7 WSHAHGPNPWKVVQALKELDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDY 66 Query: 329 ------GLCLYSRDRLLSASTVT----HPEYYKVTKFLYATCGGSTV 439 + +Y D+ + ++ HPEYYKV ++L+ G + Sbjct: 67 TIWESDAILIYLADKYDTERKISLPRDHPEYYKVIQYLFFQASGQGI 113
>BEM2_ASHGO (Q9HF75) GTPase-activating protein BEM2| Length = 2071 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 2/25 (8%) Frame = -3 Query: 401 SPCSTPGGSPWRRTAG--GHGYTGT 333 SPCS P GSP RR G G Y GT Sbjct: 134 SPCSQPAGSPVRRGGGLNGETYDGT 158
>OCTB2_DROME (Q4LBB9) Octopamine receptor beta-2 (DmOct-beta-12)| Length = 536 Score = 29.6 bits (65), Expect = 4.7 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +2 Query: 212 WKGLLDPLDVDLRRSIIAYGELASAAHDGFNLEKRSP 322 WK PLD+D+RRS + Y + A + + L +P Sbjct: 488 WKDRHLPLDIDIRRSSLRYDQRAKSVYSESYLNSTTP 524
>CI072_MOUSE (Q6DFW0) Protein C9orf72 homolog| Length = 420 Score = 29.6 bits (65), Expect = 4.7 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 7/98 (7%) Frame = +2 Query: 230 PLDVDLRRSIIAYGELASAAHDGFNLEKRSPHAGLCLYSRDRLLSASTVTHPEYYKVTKF 409 P D+D+ +++ ++ + H+GF L S H C S V KV K Sbjct: 196 PEDIDIADTVLNDDDIGDSCHEGFLLNAISSHLQTC--------GCSVVVGSSAEKVNKI 247 Query: 410 -----LYATCGGSTVSRL--ATSVPTVTSALFVQPLGK 502 L+ T SRL A S S LFVQ L K Sbjct: 248 VRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLK 285
>ISPH_AZOSE (Q5P224) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC| 1.17.1.2) Length = 312 Score = 29.3 bits (64), Expect = 6.2 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = -2 Query: 474 LVTVGTDVANLDTVDPPQVAYRNLVTL 394 LV V DVAN++ DP Q+AY TL Sbjct: 143 LVEVVQDVANIEVADPQQLAYVTQTTL 169
>FRDA_SHEFR (Q02469) Fumarate reductase flavoprotein subunit precursor (EC| 1.3.99.1) (Flavocytochrome c) (Flavocytochrome c3) (Fcc3) Length = 596 Score = 29.3 bits (64), Expect = 6.2 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -1 Query: 331 AGMR*PLLEVEPVVGGRRKLAVSDDGASEVDVQRVQE 221 +G + L+E EPV+GG KLA A+ D Q+ ++ Sbjct: 173 SGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKK 209
>CI072_RAT (Q66HC3) Protein C9orf72 homolog| Length = 481 Score = 28.9 bits (63), Expect = 8.1 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 7/98 (7%) Frame = +2 Query: 230 PLDVDLRRSIIAYGELASAAHDGFNLEKRSPHAGLCLYSRDRLLSASTVTHPEYYKVTKF 409 P D+D+ +++ ++ + H+GF L S H C S V KV K Sbjct: 196 PEDLDIADTVLNDDDIGDSCHEGFLLNAISSHLQTC--------GCSVVVGSSAEKVNKI 247 Query: 410 -----LYATCGGSTVSRL--ATSVPTVTSALFVQPLGK 502 L+ T SRL A S S LFVQ L K Sbjct: 248 VRTLCLFLTPAERKCSRLCEAESSFKYESGLFVQGLLK 285
>CDC12_SCHPO (Q10059) Cell division control protein 12| Length = 1841 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +2 Query: 200 GSDSWKGLLDPLDVDLRRSIIAYGELASAAHDGFNLEKR 316 GS+S GL D L++ + GE++S A G+N EKR Sbjct: 1482 GSESTDGLSDALNITPTKK----GEVSSKAKKGYNYEKR 1516 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,661,283 Number of Sequences: 219361 Number of extensions: 1136860 Number of successful extensions: 4258 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3906 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4257 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
